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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.36899 (16 seq.)
>C171001965
CP009247
Actinomycetota
Corynebacterium frankenforstense DSM 45800 ST18 [CP009247]
212216
212304
+
Ser
CGA
-
¡û
>WENV170688355
LFRM01241137
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
1065
1155
+
Ser
CGA
[ENA]
¢þ
>WENV170717991
LSQX01057578
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
28579
28669
+
Ser
CGA
[ENA]
¢þ
>WENV170719027
LSQX01099568
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
2252
2164
-
Ser
CGA
[ENA]
¢þ
>C181211249
LS483404
Actinomycetota
Corynebacterium renale NCTC11140 [LS483404]
571245
571335
+
Ser
CGA
-
¡û
>C181215106
LS483464
Actinomycetota
Corynebacterium renale NCTC7448 [LS483464]
996469
996559
+
Ser
CGA
-
¡û
>W141563942
JIAJ01000002
Actinomycetota
Corynebacterium halotolerans YIM 70093 = DSM 44683 [JIAJ]
178466
178556
+
Ser
CGA
[ENA]
¡û
>W1810058158
PDJF01000001
Actinomycetota
Corynebacterium renale DSM 20688 [PDJF]
592279
592189
-
Ser
CGA
[ENA]
¡û
>C151007252
CP005286
Actinomycetota
Corynebacterium humireducens NBRC 106098 = DSM 45392 [CP005286]
170035
170125
+
Ser
CGA
[Ensembl]
¡û
>C151034694
CP007790
Actinomycetota
Corynebacterium marinum DSM 44953 [CP007790]
186694
186784
+
Ser
CGA
[Ensembl]
¡û
>W1511461079
JVMD01000023
Actinomycetota
Corynebacterium halotolerans 307_CHAL [JVMD]
124296
124386
+
Ser
CGA
[ENA]
¡û
>W1511644874
LDYE01000004
Actinomycetota
Corynebacterium renale CIP 52.96 [LDYE]
52193
52103
-
Ser
CGA
[ENA]
¡û
>W1610069814
BCSU01000008
Actinomycetota
Corynebacterium humireducens NBRC 106098 = DSM 45392 [BCSU]
93482
93392
-
Ser
CGA
[ENA]
¡û
>C131005376
CP003697
Actinomycetota
Corynebacterium halotolerans YIM 70093 = DSM 44683 [CP003697]
304913
305003
+
Ser
CGA
[Ensembl]
¡û
>W1710067187
BCSU01000008
Actinomycetota
Corynebacterium humireducens NBRC 106098 = DSM 45392 [BCSU]
93482
93392
-
Ser
CGA
[ENA]
¡û
>W1710608163
FXAR01000002
Actinomycetota
Corynebacterium pollutisoli [FXAR]
104291
104203
-
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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