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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.37521 (30 seq.)
>C024993
CP000448
Bacillota
Syntrophomonas wolfei subsp. wolfei str. Goettingen G311 [CP000448]
14133
14222
+
Ser
TGA
[Ensembl]
¡û
>WENV180455548
OBXO01008963
[OBXO] human gut metagenome; faeces
198
110
-
Ser
TGA
[ENA]
¡û
>WENV180528980
OCHJ01053804
[OCHJ] human gut metagenome; human gut
315
227
-
Ser
TGA
[ENA]
¡û
>WENV181686584
OGOW01024210
[OGOW] human gut metagenome; faeces
727
815
+
Ser
TGA
[ENA]
¡û
>WENV182910959
OKTJ01027393
[OKTJ] human gut metagenome; feces
280
368
+
Ser
TGA
[ENA]
¡û
>WENV183377880
OLYB01082547
[OLYB] human gut metagenome; feces
625
537
-
Ser
TGA
[ENA]
¡û
>WENV183545685
OOAQ01015602
[OOAQ] human gut metagenome; human gut
2123
2211
+
Ser
TGA
[ENA]
¡û
>WENV170002912
AGTN01167751
[AGTN] bioreactor metagenome; poplar biomass
873
784
-
Ser
TGA
[ENA]
¡û
>WENV170562142
CZCB01001082
[CZCB] anaerobic digester metagenome; anaerobic digester
23013
23102
+
Ser
TGA
[ENA]
¡û
>WENV170562503
CZCB01003241
[CZCB] anaerobic digester metagenome; anaerobic digester
3086
2997
-
Ser
TGA
[ENA]
¡û
>WENV170563219
CZCB01012168
[CZCB] anaerobic digester metagenome; anaerobic digester
1976
2065
+
Ser
TGA
[ENA]
¡û
>WENV170563282
CZCB01013638
[CZCB] anaerobic digester metagenome; anaerobic digester
10321
10410
+
Ser
TGA
[ENA]
¡û
>WENV170715407
LNQE01001917
[LNQE] hydrocarbon metagenome; hydrocarbon-contaminated ditch
10849
10760
-
Ser
TGA
[ENA]
¡û
>WENV170716705
LSQX01008816
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
4005
3916
-
Ser
TGA
[ENA]
¡û
>WENV170721558
LSQX01194855
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
259
170
-
Ser
TGA
[ENA]
¡û
>WENV170722779
LSQX01242782
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
61199
61288
+
Ser
TGA
[ENA]
¡û
>WENV170723186
LSQX01258219
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
1079
990
-
Ser
TGA
[ENA]
¡û
>WENV170725881
LSQX01359533
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
2901
2813
-
Ser
TGA
[ENA]
¡û
>WENV170727076
LSQX01403869
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
259
170
-
Ser
TGA
[ENA]
¡û
>WENV170968263
MTKW01007569
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
3116
3027
-
Ser
TGA
[ENA]
¡û
>WENV170969506
MTKW01030541
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
5998
6087
+
Ser
TGA
[ENA]
¡û
>W2012234883
WBXO01000004
Bacillota
Heliorestis acidaminivorans DSM 24790 [WBXO]
13361
13450
+
Ser
TGA
[ENA]
¡û
>C241103188
CP045875
Bacillota
Heliorestis convoluta HH [CP045875]
2336847
2336936
+
Ser
TGA
-
¡û
>C10104823
CP001720
Bacillota
Desulfofarcimen acetoxidans DSM 771 [CP001720]
4514171
4514082
-
Ser
TGA
[Ensembl]
¡û
>W1511430074
JUEF01000029
Bacillota
Peptococcaceae bacterium BICA1-8 [JUEF]
16431
16520
+
Ser
TGA
[ENA]
¡û
>W1511564280
LADP01000023
Bacillota
Peptococcaceae bacterium BRH_c8a [LADP]
112919
112830
-
Ser
TGA
[ENA]
¡û
>W1511564477
LADT01000067
Bacillota
Clostridiaceae bacterium BRH_c20a [LADT]
19147
19058
-
Ser
TGA
[ENA]
¡û
>W1610606180
LFSQ01000044
Bacillota
Syntrophomonas sp. DTU019 [LFSQ]
141
230
+
Ser
TGA
[ENA]
¡û
>W1710605252
FWWT01000014
Bacillota
Desulfonispora thiosulfatigenes DSM 11270 [FWWT]
10520
10431
-
Ser
TGA
[ENA]
¡û
>W1710727467
LFSQ01000044
Bacillota
Syntrophomonas sp. DTU019 [LFSQ]
141
230
+
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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