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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.404673 (36 seq.)
>W131036359
ALVN01000001
Cyanobacteriota
Leptolyngbya sp. PCC 7375 [ALVN]
4529587
4529514
-
Met
CAT
[ENA]
¡û
>W131036406
ALVP01000011
Cyanobacteriota
Nodosilinea nodulosa PCC 7104 [ALVP]
330640
330569
-
Met
CAT
[ENA]
¡û
>W131063230
ANKN01000117
Cyanobacteriota
Prochlorothrix hollandica PCC 9006 [ANKN]
95077
95150
+
Met
CAT
[ENA]
¡û
>C007368
CP000239
Cyanobacteriota
Synechococcus sp. JA-3-3Ab [CP000239]
470364
470435
+
Met
CAT
[Ensembl]
¡û
>C007452
CP000240
Cyanobacteriota
Synechococcus sp. JA-2-3B'a[2-13] [CP000240]
828756
828685
-
Met
CAT
[Ensembl]
¡û
>C021112
AP008231
Cyanobacteriota
Synechococcus elongatus PCC 6301 [AP008231]
1033161
1033090
-
Met
CAT
[Ensembl]
¡û
>C021128
CP000100
Cyanobacteriota
Synechococcus elongatus PCC 7942 = FACHB-805 [CP000100]
587716
587787
+
Met
CAT
[Ensembl]
¡û
>C171127266
CP021983
Cyanobacteriota
Halomicronema hongdechloris C2206 [CP021983]
4594003
4594078
+
Met
CAT
-
¡û
>W141038446
ALVV02000019
Cyanobacteriota
Leptolyngbya sp. PCC 6406 [ALVV]
49643
49716
+
Met
CAT
[ENA]
¡û
>W141139167
AWNH01000098
Cyanobacteriota
Leptolyngbya sp. Heron Island J [AWNH]
71622
71551
-
Met
CAT
[ENA]
¡û
>WENV181852696
OGWH01000523
[OGWH] freshwater metagenome; freshwater
3273
3200
-
Met
CAT
[ENA]
¢þ
>WENV183747994
PPFU01006082
[PPFU] hypolithon metagenome; Antarctic Hypolithon
1606
1535
-
Met
CAT
[ENA]
¢þ
>WENV170000559
AFSR01000252
[AFSR] hot springs metagenome; Yellowstone National Park Mushroom and Octopus hot springs
8588
8659
+
Met
CAT
[ENA]
¢þ
>ENV08002409
ABPT01007872
microbial mat metagenome; Guerrero Negro Hypersaline Mat 05; altitude 310m AMSL; sample depth 1m below water level, 4-5mm depth into the mat
495
424
-
Met
CAT
[ENA]
¡û
>C191099584
CP033061
Cyanobacteriota
Synechococcus elongatus UTEX 3055 [CP033061]
484131
484058
-
Met
CAT
-
¡û
>W09101132
AADZ01000002
Cyanobacteriota
Synechococcus elongatus PCC 7942 [AADZ]
123436
123363
-
Met
CAT
[ENA]
¡û
>W1910002844
AUMZ01000001
Cyanobacteriota
Synechococcus sp. 60AY4M2 [AUMZ]
1283127
1283056
-
Met
CAT
[ENA]
¡û
>W1910002891
AUNA01000001
Cyanobacteriota
Synechococcus sp. 63AY4M1 [AUNA]
704772
704701
-
Met
CAT
[ENA]
¡û
>W1910005386
AXUV01000001
Cyanobacteriota
Synechococcus sp. 65AY640 [AXUV]
2629823
2629894
+
Met
CAT
[ENA]
¡û
>W1910005436
AXUW01000001
Cyanobacteriota
Synechococcus sp. 65AY6A5 [AXUW]
1873896
1873825
-
Met
CAT
[ENA]
¡û
>W1910005494
AXUX01000001
Cyanobacteriota
Synechococcus sp. 63AY4M2 [AXUX]
1138108
1138037
-
Met
CAT
[ENA]
¡û
>W1910005546
AXZO01000001
Cyanobacteriota
Synechococcus sp. 65AY6Li [AXZO]
502242
502171
-
Met
CAT
[ENA]
¡û
>W1910695494
MDVL01000402
Cyanobacteriota
Euhalothece sp. KZN 001 KZN 001 [MDVL]
4336
4407
+
Met
CAT
[ENA]
¡û
>W1911741931
QVFV01000001
Cyanobacteriota
Leptolyngbya sp. LK str. Lakshadweep [QVFV]
179691
179618
-
Met
CAT
[ENA]
¡û
>W1810398590
PYEQ01000162
Cyanobacteriota
filamentous cyanobacterium CCP5 [PYEQ]
2601
2528
-
Met
CAT
[ENA]
¡û
>W1810398641
PYER01000250
Cyanobacteriota
filamentous cyanobacterium CCT1 [PYER]
1034
963
-
Met
CAT
[ENA]
¡û
>W1810400253
PYFY01000248
Cyanobacteriota
filamentous cyanobacterium CCP4 [PYFY]
1063
992
-
Met
CAT
[ENA]
¡û
>W1810401286
PYGV01000095
Cyanobacteriota
filamentous cyanobacterium CCP3 [PYGV]
8036
7965
-
Met
CAT
[ENA]
¡û
>C151009161
CP006471
Cyanobacteriota
Synechococcus elongatus UTEX 2973 [CP006471]
2671041
2670968
-
Met
CAT
[Ensembl]
¡û
>WENV11100902
AFSR01000252
[AFSR] hot springs metagenome; Yellowstone National Park Mushroom and Octopus hot springs
8588
8659
+
Met
CAT
[ENA]
¡û
>W1511324034
JQFA01000004
Cyanobacteriota
Leptolyngbya sp. KIOST-1 [JQFA]
485370
485299
-
Met
CAT
[ENA]
¡û
>W1511400824
JTHE01000261
Cyanobacteriota
Lyngbya confervoides BDU141951 [JTHE]
311529
311602
+
Met
CAT
[ENA]
¡û
>W1511401848
JTJD01000258
Cyanobacteriota
Aphanocapsa montana BDHKU210001 [JTJD]
288334
288261
-
Met
CAT
[ENA]
¡û
>C131010385
CP003944
Cyanobacteriota
Dactylococcopsis salina PCC 8305 [CP003944]
1216893
1216822
-
Met
CAT
[Ensembl]
¡û
>C131010405
CP003945
Cyanobacteriota
Halothece sp. PCC 7418 [CP003945]
3656517
3656588
+
Met
CAT
[Ensembl]
¡û
>W1710698088
LAZT01000007
Cyanobacteriota
Halomicronema hongdechloris C2206 [LAZT]
72404
72479
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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