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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.41258 (50 seq.)
>W1711484254
MKCO01000001
Campylobacterota
Poseidonibacter lekithochrous LFT 1.7 [MKCO]
937585
937673
+
Ser
TGA
[ENA]
¡û
>W1711484293
MKCO01000028
Campylobacterota
Poseidonibacter lekithochrous LFT 1.7 [MKCO]
746
658
-
Ser
TGA
[ENA]
¡û
>W1711484296
MKCO01000028
Campylobacterota
Poseidonibacter lekithochrous LFT 1.7 [MKCO]
220
132
-
Ser
TGA
[ENA]
¡û
>WENV181215085
OFBZ01003060
[OFBZ] metagenome; hydrothermal vent
1652
1562
-
Ser
TGA
[ENA]
¡û
>WENV182590625
OJIJ01000612
[OJIJ] seawater metagenome; Sea water
3583
3671
+
Ser
TGA
[ENA]
¡û
>W141290000
JARU01000018
Campylobacterota
Aliarcobacter lanthieri AF1440 [JARU]
11501
11588
+
Ser
TGA
[ENA]
¡û
>W141290060
JARV01000016
Campylobacterota
Aliarcobacter lanthieri AF1581 [JARV]
11069
11156
+
Ser
TGA
[ENA]
¡û
>W141291681
JATO01000021
Campylobacterota
Aliarcobacter lanthieri AF1430 [JATO]
126646
126559
-
Ser
TGA
[ENA]
¡û
>WENV183058405
OLHQ01011138
[OLHQ] seawater metagenome; Sea water
631
543
-
Ser
TGA
[ENA]
¡û
>WENV170012437
ASRK01000059
[ASRK] bioreactor metagenome; day 48 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
23942
23854
-
Ser
TGA
[ENA]
¡û
>WENV170012521
ASRL01000062
[ASRL] bioreactor metagenome; day 67 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
23941
23853
-
Ser
TGA
[ENA]
¡û
>WENV170012586
ASRM01000075
[ASRM] bioreactor metagenome; day 74 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
63
151
+
Ser
TGA
[ENA]
¡û
>WENV170012660
ASRN01000059
[ASRN] bioreactor metagenome; day 82 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
23952
23864
-
Ser
TGA
[ENA]
¡û
>WENV170012774
ASRO01000514
[ASRO] bioreactor metagenome; day 119 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
4320
4232
-
Ser
TGA
[ENA]
¡û
>WENV170012856
ASRP01002975
[ASRP] bioreactor metagenome; day 140 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
1314
1226
-
Ser
TGA
[ENA]
¡û
>WENV170012962
ASRQ01000317
[ASRQ] bioreactor metagenome; day 168 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
4320
4232
-
Ser
TGA
[ENA]
¡û
>WENV170013035
ASRR01000411
[ASRR] bioreactor metagenome; day 185 samples from continuous culture bioreactor inoculated with sediment from the German Wadden
4310
4222
-
Ser
TGA
[ENA]
¡û
>WENV170014344
AYRE01004407
[AYRE] bioreactor metagenome; day 6 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
428
340
-
Ser
TGA
[ENA]
¡û
>WENV170014459
AYRG01000616
[AYRG] bioreactor metagenome; day 33 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
4320
4232
-
Ser
TGA
[ENA]
¡û
>WENV170657358
JTFO01133900
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
485
573
+
Ser
TGA
[ENA]
¡û
>WENV170704225
LLEJ01000235
[LLEJ] bioreactor metagenome; day101 10degC chemostat 2011 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
572
484
-
Ser
TGA
[ENA]
¡û
>WENV170704605
LLEL01008415
[LLEL] bioreactor metagenome; day35 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
215
127
-
Ser
TGA
[ENA]
¡û
>WENV170704877
LLEN01007845
[LLEN] bioreactor metagenome; day86 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
215
303
+
Ser
TGA
[ENA]
¡û
>C191084655
CP032101
Campylobacterota
Malaciobacter marinus JCM 15502 [CP032101]
2679333
2679245
-
Ser
TGA
-
¡û
>W1911413081
NWVW01000018
Campylobacterota
Arcobacter sp. F138-33 [NWVW]
24191
24279
+
Ser
TGA
[ENA]
¡û
>W1911413128
NWVX01000031
Campylobacterota
Arcobacter marinus F140-37 [NWVX]
8692
8604
-
Ser
TGA
[ENA]
¡û
>W1911419388
NXAO01000050
Campylobacterota
Arcobacter marinus CECT 7727 [NXAO]
21307
21395
+
Ser
TGA
[ENA]
¡û
>W1911576344
PDJY01000022
Campylobacterota
Arcobacter halophilus F166-45 [PDJY]
30232
30144
-
Ser
TGA
[ENA]
¡û
>W1911576459
PDKB01000021
Campylobacterota
Arcobacter sp. CECT 9230 [PDKB]
32106
32019
-
Ser
TGA
[ENA]
¡û
>W1911576771
PDKI01000015
Campylobacterota
Arcobacter sp. CECT 9188 [PDKI]
32314
32227
-
Ser
TGA
[ENA]
¡û
>W1810058610
PDKA01000010
Campylobacterota
Arcobacter sp. FW59 [PDKA]
79586
79499
-
Ser
TGA
[ENA]
¡û
>W1810295910
PTIW01000019
Campylobacterota
Malaciobacter marinus MARC-MIP3H16 [PTIW]
24556
24644
+
Ser
TGA
[ENA]
¡û
>W1810462555
PZYW01000002
Campylobacterota
Poseidonibacter lekithochrous LMG 28652 [PZYW]
213969
214057
+
Ser
TGA
[ENA]
¡û
>W1810462581
PZYW01000012
Campylobacterota
Poseidonibacter lekithochrous LMG 28652 [PZYW]
52525
52613
+
Ser
TGA
[ENA]
¡û
>W1810462584
PZYW01000012
Campylobacterota
Poseidonibacter lekithochrous LMG 28652 [PZYW]
53051
53139
+
Ser
TGA
[ENA]
¡û
>W2011138874
NWVW01000018
Campylobacterota
Arcobacter sp. F138-33 [NWVW]
24191
24279
+
Ser
TGA
[ENA]
¡û
>W2011138921
NWVX01000031
Campylobacterota
Arcobacter marinus F140-37 [NWVX]
8692
8604
-
Ser
TGA
[ENA]
¡û
>W2011139286
NXAO01000050
Campylobacterota
Arcobacter marinus CECT 7727 [NXAO]
21307
21395
+
Ser
TGA
[ENA]
¡û
>W2011186158
PDJY01000022
Campylobacterota
Arcobacter halophilus F166-45 [PDJY]
30232
30144
-
Ser
TGA
[ENA]
¡û
>W2011186273
PDKB01000021
Campylobacterota
Arcobacter sp. CECT 9230 [PDKB]
32106
32019
-
Ser
TGA
[ENA]
¡û
>W2011186585
PDKI01000015
Campylobacterota
Arcobacter sp. CECT 9188 [PDKI]
32314
32227
-
Ser
TGA
[ENA]
¡û
>W2110201356
JACDJG010000005
Campylobacterota
Aliarcobacter lanthieri R-75363 [JACDJG]
10093
10180
+
Ser
TGA
[ENA]
¡û
>C231428890
CP100595
Campylobacterota
Arcobacter sp. ARW1-2F2 [CP100595]
2932267
2932179
-
Ser
TGA
-
¡û
>C231428921
CP100595
Campylobacterota
Arcobacter sp. ARW1-2F2 [CP100595]
1282650
1282562
-
Ser
TGA
-
¡û
>C241068613
CP042812
Campylobacterota
Malaciobacter canalis LMG 29148 [CP042812]
2626685
2626597
-
Ser
TGA
-
¡û
>C241161690
CP053839
Campylobacterota
Aliarcobacter lanthieri LMG 28516 [CP053839]
2032527
2032614
+
Ser
TGA
-
¡û
>C241165589
CP054052
Campylobacterota
Poseidonibacter lekithochrous DSM 100870 [CP054052]
3339215
3339127
-
Ser
TGA
-
¡û
>C241165592
CP054052
Campylobacterota
Poseidonibacter lekithochrous DSM 100870 [CP054052]
3338686
3338598
-
Ser
TGA
-
¡û
>C241165631
CP054052
Campylobacterota
Poseidonibacter lekithochrous DSM 100870 [CP054052]
1454709
1454621
-
Ser
TGA
-
¡û
>W1710602833
FUYO01000016
Campylobacterota
Malaciobacter marinus [FUYO]
42191
42103
-
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK