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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.453483 (130 seq.)
>W1711136069
LUZT01000006
Chlorobiota
Chlorobiales bacterium Clorobi_01 [LUZT]
642973
643048
+
Pro
TGG
[ENA]
¡û
>W1711167321
LVWG01000033
Chlorobiota
Pelodictyon luteolum [LVWG]
121193
121266
+
Pro
TGG
[ENA]
¡û
>C171049466
CP016432
Chlorobiota
Prosthecochloris sp. CIB 2401 [CP016432]
1481968
1481895
-
Pro
TGG
-
¡û
>C171060581
CP017305
Chlorobiota
Chlorobaculum limnaeum DSM 1677 [CP017305]
1686934
1686859
-
Pro
TGG
-
¡û
>C171114016
CP020873
Chlorobiota
Prosthecochloris sp. HL-130-GSB [CP020873]
1507461
1507388
-
Pro
TGG
-
¡û
>C007014
AE006470
Chlorobiota
Chlorobaculum tepidum TLS [AE006470]
710320
710395
+
Pro
TGG
[Ensembl]
¡û
>C016737
CP000096
Chlorobiota
Pelodictyon luteolum DSM 273 [CP000096]
826324
826396
+
Pro
TGG
[Ensembl]
¡û
>C018264
CP000607
Chlorobiota
Chlorobium phaeovibrioides [CP000607]
1257036
1256964
-
Pro
TGG
[Ensembl]
¡û
>w007155
AAIJ01000005
Chlorobiota
Prosthecochloris aestuarii DSM 271 [AAIJ]
80638
80713
+
Pro
TGG
[ENA]
¡û
>w006967
AAIC01000035
Chlorobiota
Chlorobium phaeobacteroides BS1 [AAIC]
157
85
-
Pro
TGG
[ENA]
¡û
>WENV181237133
OFFA01158124
[OFFA] coral metagenome; NA
594
521
-
Pro
TGG
[ENA]
¢þ
>C08003655
CP001101
Chlorobiota
Chlorobium phaeobacteroides [CP001101]
1762870
1762795
-
Pro
TGG
[Ensembl]
¡û
>C08003582
CP001099
Chlorobiota
Chlorobaculum parvum NCIB 8327 [CP001099]
746863
746938
+
Pro
TGG
[Ensembl]
¡û
>C08007156
CP001108
Chlorobiota
Prosthecochloris aestuarii DSM 271 [CP001108]
894748
894821
+
Pro
TGG
[Ensembl]
¡û
>WENV183513447
OMKS01005044
[OMKS] sediment metagenome; hot spring sediment
8392
8465
+
Pro
TGG
[ENA]
¢þ
>WENV170613654
FUWD012815686
[FUWD] metagenome; unknown
5748
5821
+
Pro
TGG
[ENA]
¢þ
>WENV170613742
FUWD012818036
[FUWD] metagenome; unknown
1983
2056
+
Pro
TGG
[ENA]
¢þ
>WENV170625541
FUWD013200087
[FUWD] metagenome; unknown
2123
2198
+
Pro
TGG
[ENA]
¢þ
>WENV170633768
FUWD013402406
[FUWD] metagenome; unknown
2123
2198
+
Pro
TGG
[ENA]
¢þ
>C181068791
CP022571
Chlorobiota
Prosthecochloris sp. GSB1 TY Vent [CP022571]
1533968
1533895
-
Pro
TGG
-
¡û
>W09103353
AAJD01000007
Chlorobiota
Chlorobium phaeovibrioides DSM 265 [AAJD]
86761
86834
+
Pro
TGG
[ENA]
¡û
>W1810062190
PDNX01000007
Chlorobiota
Prosthecochloris sp. ZM [PDNX]
1637696
1637623
-
Pro
TGG
[ENA]
¡û
>W1810062234
PDNY01000023
Chlorobiota
Prosthecochloris sp. ZM_2 [PDNY]
5649
5576
-
Pro
TGG
[ENA]
¡û
>W1810062276
PDNZ01000005
Chlorobiota
Prosthecochloris marina V1 [PDNZ]
49372
49445
+
Pro
TGG
[ENA]
¡û
>SRA1019852
SRR035083.4731
454 Sequencing (SRP001804)
65
138
+
Pro
TGG
[SRA]
>SRA1020071
SRR035083.53112
454 Sequencing (SRP001804)
63
136
+
Pro
TGG
[SRA]
>SRA1020166
SRR035083.65428
454 Sequencing (SRP001804)
296
369
+
Pro
TGG
[SRA]
>SRA1020174
SRR035083.67194
454 Sequencing (SRP001804)
208
135
-
Pro
TGG
[SRA]
>SRA1020214
SRR035083.75399
454 Sequencing (SRP001804)
250
323
+
Pro
TGG
[SRA]
>SRA1020237
SRR035083.79926
454 Sequencing (SRP001804)
363
290
-
Pro
TGG
[SRA]
>SRA1020257
SRR035083.84605
454 Sequencing (SRP001804)
63
136
+
Pro
TGG
[SRA]
>SRA1020309
SRR035083.95481
454 Sequencing (SRP001804)
172
99
-
Pro
TGG
[SRA]
>SRA1020372
SRR035083.103527
454 Sequencing (SRP001804)
296
369
+
Pro
TGG
[SRA]
>SRA1020418
SRR035083.111947
454 Sequencing (SRP001804)
109
36
-
Pro
TGG
[SRA]
>SRA1020639
SRR035083.145475
454 Sequencing (SRP001804)
411
338
-
Pro
TGG
[SRA]
>SRA1020756
SRR035083.160115
454 Sequencing (SRP001804)
303
230
-
Pro
TGG
[SRA]
>SRA1020798
SRR035083.166747
454 Sequencing (SRP001804)
409
336
-
Pro
TGG
[SRA]
>SRA1020849
SRR035083.172929
454 Sequencing (SRP001804)
449
522
+
Pro
TGG
[SRA]
>SRA1020920
SRR035083.185445
454 Sequencing (SRP001804)
341
414
+
Pro
TGG
[SRA]
>SRA1020948
SRR035083.189354
454 Sequencing (SRP001804)
256
183
-
Pro
TGG
[SRA]
>SRA1021006
SRR035083.196753
454 Sequencing (SRP001804)
243
316
+
Pro
TGG
[SRA]
>SRA1021183
SRR035083.220878
454 Sequencing (SRP001804)
307
380
+
Pro
TGG
[SRA]
>SRA1021203
SRR035083.223320
454 Sequencing (SRP001804)
315
242
-
Pro
TGG
[SRA]
>SRA1021213
SRR035083.224815
454 Sequencing (SRP001804)
111
184
+
Pro
TGG
[SRA]
>SRA1021229
SRR035083.227212
454 Sequencing (SRP001804)
297
370
+
Pro
TGG
[SRA]
>SRA1021257
SRR035083.231363
454 Sequencing (SRP001804)
256
183
-
Pro
TGG
[SRA]
>SRA1021413
SRR035083.255730
454 Sequencing (SRP001804)
377
450
+
Pro
TGG
[SRA]
>SRA1021429
SRR035083.257178
454 Sequencing (SRP001804)
427
500
+
Pro
TGG
[SRA]
>SRA1021581
SRR035083.276338
454 Sequencing (SRP001804)
271
198
-
Pro
TGG
[SRA]
>SRA1021622
SRR035083.283469
454 Sequencing (SRP001804)
361
288
-
Pro
TGG
[SRA]
>SRA1021697
SRR035083.293966
454 Sequencing (SRP001804)
60
133
+
Pro
TGG
[SRA]
>SRA1021707
SRR035083.296280
454 Sequencing (SRP001804)
26
99
+
Pro
TGG
[SRA]
>SRA1021720
SRR035083.297405
454 Sequencing (SRP001804)
361
288
-
Pro
TGG
[SRA]
>SRA1021898
SRR035083.326255
454 Sequencing (SRP001804)
334
407
+
Pro
TGG
[SRA]
>SRA1022020
SRR035083.340067
454 Sequencing (SRP001804)
83
156
+
Pro
TGG
[SRA]
>SRA1022023
SRR035083.340144
454 Sequencing (SRP001804)
186
113
-
Pro
TGG
[SRA]
>SRA1022145
SRR035083.359528
454 Sequencing (SRP001804)
308
235
-
Pro
TGG
[SRA]
>SRA1022162
SRR035083.361290
454 Sequencing (SRP001804)
254
181
-
Pro
TGG
[SRA]
>SRA1022245
SRR035083.374002
454 Sequencing (SRP001804)
428
501
+
Pro
TGG
[SRA]
>SRA1022322
SRR035083.389454
454 Sequencing (SRP001804)
271
198
-
Pro
TGG
[SRA]
>SRA1022382
SRR035083.398526
454 Sequencing (SRP001804)
294
367
+
Pro
TGG
[SRA]
>SRA1022438
SRR035083.405859
454 Sequencing (SRP001804)
5
78
+
Pro
TGG
[SRA]
>SRA1022479
SRR035083.411851
454 Sequencing (SRP001804)
254
181
-
Pro
TGG
[SRA]
>SRA1022666
SRR035083.439576
454 Sequencing (SRP001804)
352
279
-
Pro
TGG
[SRA]
>SRA1022692
SRR035083.443146
454 Sequencing (SRP001804)
299
372
+
Pro
TGG
[SRA]
>SRA1022696
SRR035083.443370
454 Sequencing (SRP001804)
380
453
+
Pro
TGG
[SRA]
>SRA1022799
SRR035083.462411
454 Sequencing (SRP001804)
209
282
+
Pro
TGG
[SRA]
>SRA1022855
SRR035083.474083
454 Sequencing (SRP001804)
60
133
+
Pro
TGG
[SRA]
>SRA1032491
SRR035088.25517
454 Sequencing (SRP001809)
66
139
+
Pro
TGG
[SRA]
>SRA1032549
SRR035088.44577
454 Sequencing (SRP001809)
128
201
+
Pro
TGG
[SRA]
>SRA1033202
SRR035088.196259
454 Sequencing (SRP001809)
378
305
-
Pro
TGG
[SRA]
>SRA1033298
SRR035088.218076
454 Sequencing (SRP001809)
214
287
+
Pro
TGG
[SRA]
>SRA1033701
SRR035088.329344
454 Sequencing (SRP001809)
192
119
-
Pro
TGG
[SRA]
>SRA1034314
SRR035089.54866
454 Sequencing (SRP001810)
201
128
-
Pro
TGG
[SRA]
>SRA1035691
SRR035089.355870
454 Sequencing (SRP001810)
356
283
-
Pro
TGG
[SRA]
>SRA1036830
SRR035090.19647
454 Sequencing (SRP001811)
196
123
-
Pro
TGG
[SRA]
>SRA1036903
SRR035090.35897
454 Sequencing (SRP001811)
196
123
-
Pro
TGG
[SRA]
>SRA1036906
SRR035090.36822
454 Sequencing (SRP001811)
196
123
-
Pro
TGG
[SRA]
>SRA1036986
SRR035090.52826
454 Sequencing (SRP001811)
196
123
-
Pro
TGG
[SRA]
>SRA1037060
SRR035090.68587
454 Sequencing (SRP001811)
213
140
-
Pro
TGG
[SRA]
>SRA1037105
SRR035090.74400
454 Sequencing (SRP001811)
234
161
-
Pro
TGG
[SRA]
>SRA1037273
SRR035090.105891
454 Sequencing (SRP001811)
313
386
+
Pro
TGG
[SRA]
>SRA1037312
SRR035090.111743
454 Sequencing (SRP001811)
121
48
-
Pro
TGG
[SRA]
>SRA1037316
SRR035090.112700
454 Sequencing (SRP001811)
228
155
-
Pro
TGG
[SRA]
>SRA1037388
SRR035090.127462
454 Sequencing (SRP001811)
331
258
-
Pro
TGG
[SRA]
>SRA1037594
SRR035090.160410
454 Sequencing (SRP001811)
377
304
-
Pro
TGG
[SRA]
>SRA1037608
SRR035090.163012
454 Sequencing (SRP001811)
91
18
-
Pro
TGG
[SRA]
>SRA1037718
SRR035090.180084
454 Sequencing (SRP001811)
123
196
+
Pro
TGG
[SRA]
>SRA1037736
SRR035090.184216
454 Sequencing (SRP001811)
91
18
-
Pro
TGG
[SRA]
>SRA1037826
SRR035090.202195
454 Sequencing (SRP001811)
17
90
+
Pro
TGG
[SRA]
>SRA1037837
SRR035090.203200
454 Sequencing (SRP001811)
324
397
+
Pro
TGG
[SRA]
>SRA1037865
SRR035090.207887
454 Sequencing (SRP001811)
91
18
-
Pro
TGG
[SRA]
>SRA1037973
SRR035090.228087
454 Sequencing (SRP001811)
36
109
+
Pro
TGG
[SRA]
>SRA1038004
SRR035090.232770
454 Sequencing (SRP001811)
339
412
+
Pro
TGG
[SRA]
>SRA1038017
SRR035090.234247
454 Sequencing (SRP001811)
284
357
+
Pro
TGG
[SRA]
>SRA1038030
SRR035090.235983
454 Sequencing (SRP001811)
493
420
-
Pro
TGG
[SRA]
>SRA1038161
SRR035090.256370
454 Sequencing (SRP001811)
114
187
+
Pro
TGG
[SRA]
>SRA1038305
SRR035090.284645
454 Sequencing (SRP001811)
128
55
-
Pro
TGG
[SRA]
>SRA1038351
SRR035090.290624
454 Sequencing (SRP001811)
221
294
+
Pro
TGG
[SRA]
>SRA1038354
SRR035090.290861
454 Sequencing (SRP001811)
233
306
+
Pro
TGG
[SRA]
>SRA1038372
SRR035090.292852
454 Sequencing (SRP001811)
411
484
+
Pro
TGG
[SRA]
>SRA1038458
SRR035090.309290
454 Sequencing (SRP001811)
350
423
+
Pro
TGG
[SRA]
>SRA1038467
SRR035090.310974
454 Sequencing (SRP001811)
95
22
-
Pro
TGG
[SRA]
>SRA1038499
SRR035090.316210
454 Sequencing (SRP001811)
355
282
-
Pro
TGG
[SRA]
>SRA1038661
SRR035090.345926
454 Sequencing (SRP001811)
133
206
+
Pro
TGG
[SRA]
>SRA1038811
SRR035090.371295
454 Sequencing (SRP001811)
205
132
-
Pro
TGG
[SRA]
>SRA1038851
SRR035090.379721
454 Sequencing (SRP001811)
233
306
+
Pro
TGG
[SRA]
>SRA1038913
SRR035090.393340
454 Sequencing (SRP001811)
287
214
-
Pro
TGG
[SRA]
>SRA1039121
SRR035090.428997
454 Sequencing (SRP001811)
445
372
-
Pro
TGG
[SRA]
>SRA1039173
SRR035090.437161
454 Sequencing (SRP001811)
125
198
+
Pro
TGG
[SRA]
>SRA1039217
SRR035090.446305
454 Sequencing (SRP001811)
402
475
+
Pro
TGG
[SRA]
>SRA1039239
SRR035090.449783
454 Sequencing (SRP001811)
233
306
+
Pro
TGG
[SRA]
>SRA1039317
SRR035090.465778
454 Sequencing (SRP001811)
93
20
-
Pro
TGG
[SRA]
>SRA1039644
SRR035090.535603
454 Sequencing (SRP001811)
91
18
-
Pro
TGG
[SRA]
>SRA1039646
SRR035090.535691
454 Sequencing (SRP001811)
158
231
+
Pro
TGG
[SRA]
>SRA1039752
SRR035090.560280
454 Sequencing (SRP001811)
135
208
+
Pro
TGG
[SRA]
>SRA1039767
SRR035090.564789
454 Sequencing (SRP001811)
233
306
+
Pro
TGG
[SRA]
>SRA1042479
SRR035091.395168
454 Sequencing (SRP001812)
282
209
-
Pro
TGG
[SRA]
>SRA1043696
SRR035092.162108
454 Sequencing (SRP001813)
128
55
-
Pro
TGG
[SRA]
>SRA1046940
SRR035093.422977
454 Sequencing (SRP001814)
313
240
-
Pro
TGG
[SRA]
>SRA1049829
SRR035095.144630
454 Sequencing (SRP001816)
203
130
-
Pro
TGG
[SRA]
>SRA1053970
SRR035099.20027
454 Sequencing (SRP001820)
238
311
+
Pro
TGG
[SRA]
>SRA1054311
SRR035099.104370
454 Sequencing (SRP001820)
235
308
+
Pro
TGG
[SRA]
>SRA1054456
SRR035099.135712
454 Sequencing (SRP001820)
201
128
-
Pro
TGG
[SRA]
>SRA1054492
SRR035099.146170
454 Sequencing (SRP001820)
121
48
-
Pro
TGG
[SRA]
>SRA1054605
SRR035099.171252
454 Sequencing (SRP001820)
220
147
-
Pro
TGG
[SRA]
>SRA1054781
SRR035099.210938
454 Sequencing (SRP001820)
220
147
-
Pro
TGG
[SRA]
>SRA1054871
SRR035099.241314
454 Sequencing (SRP001820)
138
65
-
Pro
TGG
[SRA]
>W1610947189
LUZT01000006
Chlorobiota
Chlorobiales bacterium Clorobi_01 [LUZT]
642973
643048
+
Pro
TGG
[ENA]
¡û
>W1610977652
LVWG01000033
Chlorobiota
Pelodictyon luteolum [LVWG]
121193
121266
+
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK