This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.45932 (70 seq.)
>W1710815801
LKKO01000027
Alphaproteobacteria
Methylobacterium sp. GXS13 [LKKO]
45955
45866
-
Ser
GGA
[ENA]
¡û
>W1711505847
MKVW01000009
Alphaproteobacteria
Rhizobiales bacterium 62-17 [MKVW]
988387
988298
-
Ser
GGA
[ENA]
¡û
>W131162088
AQYH01000004
Alphaproteobacteria
Kaistia granuli DSM 23481 [AQYH]
90451
90362
-
Ser
GGA
[ENA]
¡û
>W131166453
ARCM01000002
Alphaproteobacteria
Ancylobacter sp. FA202 [ARCM]
1566002
1565913
-
Ser
GGA
[ENA]
¡û
>W131175681
ARJL01000003
Alphaproteobacteria
Xanthobacteraceae bacterium 501b [ARJL]
3512803
3512892
+
Ser
GGA
[ENA]
¡û
>W131186598
ARWG01000001
Alphaproteobacteria
Hyphomicrobium sp. 99 [ARWG]
3804847
3804936
+
Ser
GGA
[ENA]
¡û
>W131218786
ATYA01000002
Alphaproteobacteria
Methylocapsa acidiphila B2 [ATYA]
838213
838302
+
Ser
GGA
[ENA]
¡û
>WENV181166480
OEIU01000379
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
25889
25978
+
Ser
GGA
[ENA]
¢þ
>W141220762
AZYE01000583
Alphaproteobacteria
Microvirga lupini [AZYE]
2493
2404
-
Ser
GGA
[ENA]
¡û
>W141276727
JAEA01000007
Alphaproteobacteria
Microvirga flocculans ATCC BAA-817 [JAEA]
120191
120102
-
Ser
GGA
[ENA]
¡û
>W141278809
JAFV01000001
Alphaproteobacteria
Methylopila sp. 73B [JAFV]
3853337
3853426
+
Ser
GGA
[ENA]
¡û
>C08001620
CP001016
Alphaproteobacteria
Beijerinckia indica subsp. indica ATCC 9039 [CP001016]
1198394
1198308
-
Ser
GGA
[Ensembl]
¡û
>WENV170011931
APMI01104234
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
711
800
+
Ser
GGA
[ENA]
¢þ
>WENV170552851
CXWK01002756
[CXWK] wastewater metagenome; activated sludge
2612
2523
-
Ser
GGA
[ENA]
¢þ
>WENV170713007
LNFM01022209
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
644
555
-
Ser
GGA
[ENA]
¢þ
>WENV170972946
MTKY01005521
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
840
751
-
Ser
GGA
[ENA]
¢þ
>C181020312
CP016616
Alphaproteobacteria
Microvirga ossetica V5/3M [CP016616]
3604015
3603926
-
Ser
GGA
-
¡û
>C181175628
CP029173
Alphaproteobacteria
Methylobacterium sp. DM1 [CP029173]
693092
693181
+
Ser
GGA
-
¡û
>C191029940
CP025086
Alphaproteobacteria
Methylovirgula ligni BW863 [CP025086]
1025174
1025085
-
Ser
GGA
-
¡û
>C191221087
LR590083
Alphaproteobacteria
Beijerinckiaceae bacterium RH AL1 [LR590083]
890119
890030
-
Ser
GGA
-
¡û
>W141733735
JNLC01000010
Alphaproteobacteria
Bosea sp. 117 [JNLC]
312256
312345
+
Ser
GGA
[ENA]
¡û
>W141810180
JPUG01000037
Alphaproteobacteria
Microvirga sp. BSC39 aerilata [JPUG]
30389
30478
+
Ser
GGA
[ENA]
¡û
>W141815708
JQJH01000006
Alphaproteobacteria
Beijerinckia mobilis [JQJH]
171576
171665
+
Ser
GGA
[ENA]
¡û
>W1910006600
BAUX01000001
Alphaproteobacteria
Methylopila sp. Yamaguchi [BAUX]
387364
387275
-
Ser
GGA
[ENA]
¡û
>W1911148328
NPET01000036
Alphaproteobacteria
Rhodoblastus acidophilus DSM 137 [NPET]
10072
9983
-
Ser
GGA
[ENA]
¡û
>W1911219086
NRRJ01000001
Alphaproteobacteria
Rhodoblastus acidophilus DSM 137 [NRRJ]
83417
83328
-
Ser
GGA
[ENA]
¡û
>W1911653572
QDGA01000018
Alphaproteobacteria
Microvirga calopogonii CCBAU 65841 [QDGA]
83366
83455
+
Ser
GGA
[ENA]
¡û
>W1810273147
PSNV01000001
Alphaproteobacteria
Kaistia algarum LYH11 [PSNV]
393765
393854
+
Ser
GGA
[ENA]
¡û
>W1810330553
PUIV01000003
Alphaproteobacteria
Methylosinus sporium DSM 17706 [PUIV]
68987
68898
-
Ser
GGA
[ENA]
¡û
>W1810368603
PVZS01000017
Alphaproteobacteria
Alsobacter soli SH9 [PVZS]
89328
89239
-
Ser
GGA
[ENA]
¡û
>W1810534710
QDAH01000003
Alphaproteobacteria
Microvirga sp. KLBC 81 [QDAH]
110535
110446
-
Ser
GGA
[ENA]
¡û
>W1810884343
QUMO01000001
Alphaproteobacteria
Methylovirgula ligni BW863 [QUMO]
799896
799985
+
Ser
GGA
[ENA]
¡û
>SRA1014530
SRR023845.186302
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
125
36
-
Ser
GGA
[SRA]
>SRA1014579
SRR023845.208726
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
125
36
-
Ser
GGA
[SRA]
>SRA1014677
SRR023845.258071
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
125
36
-
Ser
GGA
[SRA]
>SRA1014726
SRR023845.284720
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
128
39
-
Ser
GGA
[SRA]
>SRA1015253
SRR023845.520122
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
125
36
-
Ser
GGA
[SRA]
>SRA1015274
SRR023845.535693
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
125
36
-
Ser
GGA
[SRA]
>SRA1015282
SRR023845.539099
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
125
36
-
Ser
GGA
[SRA]
>W10110047
ADBQ01000001
Alphaproteobacteria
Ancylobacter novellus DSM 506 [ADBQ]
1401555
1401644
+
Ser
GGA
[ENA]
¡û
>C10112199
CP002026
Alphaproteobacteria
Ancylobacter novellus DSM 506 [CP002026]
4611988
4611899
-
Ser
GGA
[Ensembl]
¡û
>W11112484
ADBQ01000001
Alphaproteobacteria
Ancylobacter novellus DSM 506 [ADBQ]
1401555
1401644
+
Ser
GGA
[ENA]
¡û
>W1511624246
LCYG01000005
Alphaproteobacteria
Microvirga vignae BR3299 [LCYG]
50357
50268
-
Ser
GGA
[ENA]
¡û
>C161003895
CP006367
Alphaproteobacteria
Aureimonas sp. AU20 [CP006367]
926085
925996
-
Ser
GGA
[Ensembl]
¡û
>W1610056464
BBWH01000024
Alphaproteobacteria
Aureimonas sp. AU12 [BBWH]
214591
214502
-
Ser
GGA
[ENA]
¡û
>W1610056505
BBWI01000010
Alphaproteobacteria
Aureimonas sp. AU20 [BBWI]
96451
96540
+
Ser
GGA
[ENA]
¡û
>W1610056636
BBWL01000001
Alphaproteobacteria
Aureimonas sp. AU40 [BBWL]
6443
6354
-
Ser
GGA
[ENA]
¡û
>W1610056734
BBWM01000058
Alphaproteobacteria
Aureimonas sp. D3 [BBWM]
143646
143735
+
Ser
GGA
[ENA]
¡û
>W1610057010
BBWS01000046
Alphaproteobacteria
Aureimonas sp. N4 [BBWS]
28175
28086
-
Ser
GGA
[ENA]
¡û
>W121068021
AJUA01000054
Alphaproteobacteria
Microvirga lotononidis WSM3557 [AJUA]
58764
58853
+
Ser
GGA
[ENA]
¡û
>W121081103
AKFK01000010
Alphaproteobacteria
Methylobacterium sp. GXF4 [AKFK]
94399
94310
-
Ser
GGA
[ENA]
¡û
>W1610588141
LDPZ01000057
Alphaproteobacteria
Aureimonas ureilytica [LDPZ]
18131
18042
-
Ser
GGA
[ENA]
¡û
>W1610588203
LDQA01000150
Alphaproteobacteria
Aureimonas ureilytica [LDQA]
470
558
+
Ser
GGA
[ENA]
¡û
>W1610679898
LKKO01000027
Alphaproteobacteria
Methylobacterium sp. GXS13 [LKKO]
45955
45866
-
Ser
GGA
[ENA]
¡û
>W1710053163
BBWH01000024
Alphaproteobacteria
Aureimonas sp. AU12 [BBWH]
214591
214502
-
Ser
GGA
[ENA]
¡û
>W1710053204
BBWI01000010
Alphaproteobacteria
Aureimonas sp. AU20 [BBWI]
96451
96540
+
Ser
GGA
[ENA]
¡û
>W1710053335
BBWL01000001
Alphaproteobacteria
Aureimonas sp. AU40 [BBWL]
6443
6354
-
Ser
GGA
[ENA]
¡û
>W1710053433
BBWM01000058
Alphaproteobacteria
Aureimonas sp. D3 [BBWM]
143646
143735
+
Ser
GGA
[ENA]
¡û
>W1710053709
BBWS01000046
Alphaproteobacteria
Aureimonas sp. N4 [BBWS]
28175
28086
-
Ser
GGA
[ENA]
¡û
>W1710505303
FMTP01000002
Alphaproteobacteria
Ancylobacter rudongensis [FMTP]
710176
710265
+
Ser
GGA
[ENA]
¡û
>W1710507559
FMVJ01000003
Alphaproteobacteria
Microvirga guangxiensis [FMVJ]
563759
563670
-
Ser
GGA
[ENA]
¡û
>W1710535129
FNSI01000001
Alphaproteobacteria
Beijerinckia sp. 28-YEA-48 [FNSI]
4009720
4009809
+
Ser
GGA
[ENA]
¡û
>W1710564952
FOQW01000004
Alphaproteobacteria
Methylobacterium brachiatum [FOQW]
82513
82424
-
Ser
GGA
[ENA]
¡û
>W1710567187
FOSN01000012
Alphaproteobacteria
Methylocapsa palsarum [FOSN]
116255
116344
+
Ser
GGA
[ENA]
¡û
>W1710568215
FOTK01000005
Alphaproteobacteria
Methylobacterium pseudosasicola [FOTK]
217566
217655
+
Ser
GGA
[ENA]
¡û
>W1710583190
FQUP01000002
Alphaproteobacteria
Kaistia soli DSM 19436 [FQUP]
547852
547763
-
Ser
GGA
[ENA]
¡û
>W1710608880
FXBL01000004
Alphaproteobacteria
Mesorhizobium australicum [FXBL]
1175445
1175534
+
Ser
GGA
[ENA]
¡û
>W1710609844
FYDG01000002
Alphaproteobacteria
Rhodoblastus acidophilus [FYDG]
500864
500953
+
Ser
GGA
[ENA]
¡û
>W1710707421
LDPZ01000057
Alphaproteobacteria
Aureimonas ureilytica [LDPZ]
18131
18042
-
Ser
GGA
[ENA]
¡û
>W1710707483
LDQA01000150
Alphaproteobacteria
Aureimonas ureilytica [LDQA]
470
558
+
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK