This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.50035 (51 seq.)
>W131218391
ATXQ01000002
Gammaproteobacteria
Denitrificimonas caeni DSM 24390 [ATXQ]
4371
4284
-
Ser
TGA
[ENA]
¡û
>W131238021
AUUA01000001
Gammaproteobacteria
Leminorella grimontii ATCC 33999 = DSM 5078 [AUUA]
949761
949674
-
Ser
TGA
[ENA]
¡û
>WENV170012450
ASRK01000302
[ASRK] bioreactor metagenome; day 48 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
4450
4537
+
Ser
TGA
[ENA]
¡û
>WENV170012527
ASRL01000169
[ASRL] bioreactor metagenome; day 67 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
10979
11066
+
Ser
TGA
[ENA]
¡û
>WENV170012610
ASRM01002024
[ASRM] bioreactor metagenome; day 74 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
1032
945
-
Ser
TGA
[ENA]
¡û
>WENV170012681
ASRN01000733
[ASRN] bioreactor metagenome; day 82 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
1917
2004
+
Ser
TGA
[ENA]
¡û
>WENV170012784
ASRO01001353
[ASRO] bioreactor metagenome; day 119 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
219
306
+
Ser
TGA
[ENA]
¡û
>WENV170014462
AYRG01000781
[AYRG] bioreactor metagenome; day 33 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
2213
2300
+
Ser
TGA
[ENA]
¡û
>WENV170686432
LFRM01144084
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
43703
43790
+
Ser
TGA
[ENA]
¡û
>WENV170688273
LFRM01237019
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
30652
30739
+
Ser
TGA
[ENA]
¡û
>WENV170689281
LFRM01286929
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
103
16
-
Ser
TGA
[ENA]
¡û
>WENV170691408
LFRM01396145
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
103
16
-
Ser
TGA
[ENA]
¡û
>WENV170704339
LLEJ01004128
[LLEJ] bioreactor metagenome; day101 10degC chemostat 2011 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
350
437
+
Ser
TGA
[ENA]
¡û
>WENV170704747
LLEM01003019
[LLEM] bioreactor metagenome; day64 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
584
671
+
Ser
TGA
[ENA]
¡û
>WENV170718099
LSQX01061553
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
147
60
-
Ser
TGA
[ENA]
¡û
>WENV170724541
LSQX01309012
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
165
78
-
Ser
TGA
[ENA]
¡û
>C181175833
CP029185
Gammaproteobacteria
Limnobaculum parvum HYN0051 [CP029185]
1551270
1551357
+
Ser
TGA
-
¡û
>C181215535
LS483470
Gammaproteobacteria
Leminorella richardii NCTC12151 [LS483470]
1565931
1566018
+
Ser
TGA
-
¡û
>W141710661
JMPN01000011
Gammaproteobacteria
Leminorella grimontii ATCC 33999 = DSM 5078 [JMPN]
16445
16532
+
Ser
TGA
[ENA]
¡û
>W1910281661
FQXW01000001
Gammaproteobacteria
Nissabacter archeti 2134 [FQXW]
127233
127146
-
Ser
TGA
[ENA]
¡û
>W1810181811
PJZF01000001
Gammaproteobacteria
Chimaeribacter californicus 2015Iso6 [PJZF]
148301
148388
+
Ser
TGA
[ENA]
¡û
>W1810181888
PJZG01000001
Gammaproteobacteria
Chimaeribacter arupi 2016Iso3 2013Iso5 [PJZG]
146850
146937
+
Ser
TGA
[ENA]
¡û
>W1810181961
PJZH01000001
Gammaproteobacteria
Chimaeribacter coloradensis 2016Iso4 [PJZH]
213822
213909
+
Ser
TGA
[ENA]
¡û
>W1810182045
PJZI01000003
Gammaproteobacteria
Chimaeribacter arupi 2016Iso3 [PJZI]
146488
146575
+
Ser
TGA
[ENA]
¡û
>W1810182116
PJZJ01000005
Gammaproteobacteria
Chimaeribacter arupi 2016Iso3 2016Iso2 [PJZJ]
66815
66728
-
Ser
TGA
[ENA]
¡û
>W1810182180
PJZK01000001
Gammaproteobacteria
Chimaeribacter arupi 2016Iso3 2016Iso1 [PJZK]
447748
447661
-
Ser
TGA
[ENA]
¡û
>W1810744618
QOVA01000020
Gammaproteobacteria
Edaphovirga cremea DSM 105170 [QOVA]
59018
58931
-
Ser
TGA
[ENA]
¡û
>C151093903
CP012358
Gammaproteobacteria
Thiopseudomonas alkaliphila B4199 [CP012358]
39065
39152
+
Ser
TGA
-
¡û
>C151093957
CP012359
Gammaproteobacteria
Thiopseudomonas alkaliphila C6819 [CP012359]
39288
39375
+
Ser
TGA
-
¡û
>C151094022
CP012360
Gammaproteobacteria
Thiopseudomonas alkaliphila C6918 [CP012360]
1289655
1289742
+
Ser
TGA
-
¡û
>C151094090
CP012361
Gammaproteobacteria
Thiopseudomonas alkaliphila D2441 [CP012361]
1999005
1999092
+
Ser
TGA
-
¡û
>C151094149
CP012362
Gammaproteobacteria
Thiopseudomonas alkaliphila D3318 [CP012362]
1031592
1031505
-
Ser
TGA
-
¡û
>C151094186
CP012363
Gammaproteobacteria
Thiopseudomonas alkaliphila E1086 [CP012363]
2064587
2064674
+
Ser
TGA
-
¡û
>C151094238
CP012364
Gammaproteobacteria
Thiopseudomonas alkaliphila E1148 [CP012364]
2029132
2029219
+
Ser
TGA
-
¡û
>W2010152304
CAADJC010000002
Gammaproteobacteria
Leminorella grimontii NCTC12152 [CAADJC]
2016752
2016839
+
Ser
TGA
[ENA]
¡û
>W2010279824
CABMGD010000001
Gammaproteobacteria
Leminorella grimontii [CABMGD]
949761
949674
-
Ser
TGA
[ENA]
¡û
>W2010394240
FQXW01000001
Gammaproteobacteria
Nissabacter archeti 2134 [FQXW]
127233
127146
-
Ser
TGA
[ENA]
¡û
>W2012023757
VFSR01000017
Gammaproteobacteria
Pragia sp. CF-509 [VFSR]
68946
69033
+
Ser
TGA
[ENA]
¡û
>W2012409709
WOYF01000001
Gammaproteobacteria
Budvicia diplopodorum D9 [WOYF]
160790
160877
+
Ser
TGA
[ENA]
¡û
>W2110111816
CAJHOA010000001
Gammaproteobacteria
Pseudomonas caeni [CAJHOA]
138861
138774
-
Ser
TGA
[ENA]
¡û
>W2110373753
JADRCP010000003
Gammaproteobacteria
Budviciaceae bacterium CWB-B4 [JADRCP]
430513
430600
+
Ser
TGA
[ENA]
¡û
>W2110373817
JADRCQ010000003
Gammaproteobacteria
Budviciaceae bacterium CWB-B43 [JADRCQ]
2722
2635
-
Ser
TGA
[ENA]
¡û
>W2110441963
JAERKB010000008
Gammaproteobacteria
Nissabacter archeti JGM97 [JAERKB]
309674
309761
+
Ser
TGA
[ENA]
¡û
>C201309221
LR698987
Gammaproteobacteria
Leminorella richardii [LR698987]
1565931
1566018
+
Ser
TGA
-
¡û
>C231564023
CP114976
Gammaproteobacteria
Denitrificimonas caeni CE14 [CP114976]
1801441
1801354
-
Ser
TGA
-
¡û
>C241078277
CP043320
Gammaproteobacteria
C27(2019) [CP043320]
1258854
1258941
+
Ser
TGA
-
¡û
>C241237055
CP119395
Gammaproteobacteria
Chimaeribacter arupi DSM 115072 [CP119395]
2770646
2770559
-
Ser
TGA
-
¡û
>W2310019136
BRLH01000001
Gammaproteobacteria
Leminorella grimontii JCM 5902 [BRLH]
1160500
1160413
-
Ser
TGA
[ENA]
¡û
>C161041371
CP012365
Gammaproteobacteria
Thiopseudomonas alkaliphila E5571 [CP012365]
2023413
2023500
+
Ser
TGA
[Ensembl]
¡û
>W1610605457
LFRZ01000045
Gammaproteobacteria
Gammaproteobacteria bacterium DTU037 [LFRZ]
43703
43790
+
Ser
TGA
[ENA]
¡û
>W1710726744
LFRZ01000045
Gammaproteobacteria
Gammaproteobacteria bacterium DTU037 [LFRZ]
43703
43790
+
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK