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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.513574 (23 seq.)
>W1711484294
MKCO01000028
Campylobacterota
Poseidonibacter lekithochrous LFT 1.7 [MKCO]
604
529
-
Cys
GCA
[ENA]
¡û
>W1711484297
MKCO01000028
Campylobacterota
Poseidonibacter lekithochrous LFT 1.7 [MKCO]
78
3
-
Cys
GCA
[ENA]
¡û
>C171088959
CP019070
Campylobacterota
Poseidonibacter parvus LPB0137 [CP019070]
2684761
2684686
-
Cys
GCA
-
¡û
>C171088990
CP019070
Campylobacterota
Poseidonibacter parvus LPB0137 [CP019070]
1210795
1210720
-
Cys
GCA
-
¡û
>WENV180042422
LQAE01018177
[LQAE] bioreactor metagenome; bioreactor_1 inoculated with Wadden Sea sediment; 1st replicate of a sulfate-reducing system that
190
265
+
Cys
GCA
[ENA]
¡û
>WENV180043324
LQAH01028934
[LQAH] bioreactor metagenome; bioreactor_4 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
204
129
-
Cys
GCA
[ENA]
¡û
>WENV180043720
LQAI01011857
[LQAI] bioreactor metagenome; bioreactor_5 inoculated with Wadden Sea sediment; 1st replicate of a sulfate-reducing system that
514
589
+
Cys
GCA
[ENA]
¡û
>WENV180044078
LQAJ01001967
[LQAJ] bioreactor metagenome; bioreactor_6 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
41
116
+
Cys
GCA
[ENA]
¡û
>WENV170014345
AYRE01004407
[AYRE] bioreactor metagenome; day 6 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
286
211
-
Cys
GCA
[ENA]
¡û
>WENV170704606
LLEL01008415
[LLEL] bioreactor metagenome; day35 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
74
1
-
Cys
GCA
[ENA]
¡û
>WENV170932830
MDTG01210296
[MDTG] marine metagenome; seawater
21
96
+
Cys
GCA
[ENA]
¡û
>W1810462582
PZYW01000012
Campylobacterota
Poseidonibacter lekithochrous LMG 28652 [PZYW]
52667
52742
+
Cys
GCA
[ENA]
¡û
>W1810462585
PZYW01000012
Campylobacterota
Poseidonibacter lekithochrous LMG 28652 [PZYW]
53193
53268
+
Cys
GCA
[ENA]
¡û
>W2011403980
RCWF01000001
Campylobacterota
Arcobacter sp. SM1702 [RCWF]
324905
324980
+
Cys
GCA
[ENA]
¡û
>W2012324572
WFKI01000157
Campylobacterota
Poseidonibacter sp. JOD-M-6 [WFKI]
159
234
+
Cys
GCA
[ENA]
¡û
>W2012324613
WFKJ01000139
Campylobacterota
Poseidonibacter sp. SJOD-M-5 [WFKJ]
87
12
-
Cys
GCA
[ENA]
¡û
>W2012324661
WFKK01000164
Campylobacterota
Poseidonibacter sp. SJOD-M-33 [WFKK]
87
12
-
Cys
GCA
[ENA]
¡û
>W2110612954
JAHKQT010000041
Campylobacterota
Poseidonibacter lekithochrous A1R12 [JAHKQT]
42405
42480
+
Cys
GCA
[ENA]
¡û
>C231428891
CP100595
Campylobacterota
Arcobacter sp. ARW1-2F2 [CP100595]
2932116
2932041
-
Cys
GCA
-
¡û
>C241165590
CP054052
Campylobacterota
Poseidonibacter lekithochrous DSM 100870 [CP054052]
3339070
3338995
-
Cys
GCA
-
¡û
>C241165593
CP054052
Campylobacterota
Poseidonibacter lekithochrous DSM 100870 [CP054052]
3338544
3338469
-
Cys
GCA
-
¡û
>W1730029849
MKCO01000011
Campylobacterota
Poseidonibacter lekithochrous LFT 1.7 [MKCO]
91760
91685
-
Cys
GCA
[ENA]
¡û
>W1710082866
BDIR01000013
Campylobacterota
Arcobacter sp. LA11 [BDIR]
22461
22386
-
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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