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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.63417 (80 seq.)
>W1710878772
LMRF01000005
Actinomycetota
Marmoricola sp. Leaf446 [LMRF]
50822
50909
+
Ser
GGA
[ENA]
¡û
>W1710899488
LNIZ01000009
Actinomycetota
Trueperella bernardiae [LNIZ]
50551
50464
-
Ser
GGA
[ENA]
¡û
>W1711009413
LQQR01000016
Actinomycetota
Brevibacterium casei [LQQR]
6008
5921
-
Ser
GGA
[ENA]
¡û
>W1711184935
LWMY01000023
Actinomycetota
Trueperella sp. HMSC08H06 [LWMY]
22764
22677
-
Ser
GGA
[ENA]
¡û
>W131230049
AUHH01000009
Actinomycetota
Granulicoccus phenolivorans DSM 17626 [AUHH]
92231
92146
-
Ser
GGA
[ENA]
¡û
>WENV180114901
OAPS01067704
[OAPS] marine metagenome; sea water
200
113
-
Ser
GGA
[ENA]
¡û
>WENV181163154
OEIO01115946
[OEIO] marine metagenome; sea ice
67
154
+
Ser
GGA
[ENA]
¡û
>WENV181308849
OFIT01026146
[OFIT] marine metagenome; seawater
249
162
-
Ser
GGA
[ENA]
¡û
>WENV181309625
OFIW01016152
[OFIW] marine metagenome; seawater
292
379
+
Ser
GGA
[ENA]
¡û
>WENV181315567
OFJP01005973
[OFJP] marine metagenome; seawater
135
48
-
Ser
GGA
[ENA]
¡û
>WENV181371469
OFQV01007504
[OFQV] wastewater metagenome; WWTP Cannobio (Effluent)
518
606
+
Ser
GGA
[ENA]
¡û
>WENV181384231
OFRH01040721
[OFRH] wastewater metagenome; Exp Tend NO 100WW
372
285
-
Ser
GGA
[ENA]
¡û
>WENV181392944
OFRX01021076
[OFRX] seawater metagenome; seawater
364
451
+
Ser
GGA
[ENA]
¡û
>WENV183615696
OOEB01095982
[OOEB] marine metagenome; sea ice
423
336
-
Ser
GGA
[ENA]
¡û
>WENV183626403
OOGI01002121
[OOGI] marine metagenome; seawater
871
958
+
Ser
GGA
[ENA]
¡û
>WENV183627095
OOGK01037236
[OOGK] marine metagenome; seawater
17
104
+
Ser
GGA
[ENA]
¡û
>WENV183629292
OOGP01017711
[OOGP] marine metagenome; seawater
364
451
+
Ser
GGA
[ENA]
¡û
>WENV170567732
FLMP01004555
[FLMP] seawater metagenome; seawater
1967
2054
+
Ser
GGA
[ENA]
¡û
>WENV170571188
FLOH01000088
[FLOH] marine metagenome; water
18112
18025
-
Ser
GGA
[ENA]
¡û
>WENV170571689
FLOH01000269
[FLOH] marine metagenome; water
54640
54555
-
Ser
GGA
[ENA]
¡û
>WENV170627041
FUWD013230901
[FUWD] metagenome; unknown
841
928
+
Ser
GGA
[ENA]
¡û
>WENV170627397
FUWD013232672
[FUWD] metagenome; unknown
43179
43092
-
Ser
GGA
[ENA]
¡û
>WENV170951051
MEHZ011533142
[MEHZ] marine metagenome; marine surface water
2998
2911
-
Ser
GGA
[ENA]
¡û
>WENV002091
AACY020058466
Marine microbial communities from Global Ocean Sampling (GOS)
132
43
-
Ser
GGA
[ENA]
>C191181619
CP040695
Actinomycetota
Nocardioides sp. S-1144 [CP040695]
347429
347342
-
Ser
GGA
-
¡û
>W141765822
JODP01000001
Actinomycetota
Kineosporia aurantiaca JCM 3230 [JODP]
900354
900441
+
Ser
GGA
[ENA]
¡û
>W141775183
JOJN01000002
Actinomycetota
Nocardioides aequoreus [JOJN]
580669
580756
+
Ser
GGA
[ENA]
¡û
>SRA1015978
SRR023846.292220
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
97
184
+
Ser
GGA
[SRA]
>SRA1024622
SRR035084.361801
454 Sequencing (SRP001805)
98
185
+
Ser
GGA
[SRA]
>W2010149111
CAACXN010000020
Actinomycetota
Brevibacterium casei 3012STDY7078520 [CAACXN]
220029
220116
+
Ser
GGA
[ENA]
¡û
>W2010309722
CABWLN010000047
Actinomycetota
Nocardioides sp. AX2bis [CABWLN]
1662
1748
+
Ser
GGA
[ENA]
¡û
>SRA1036528
SRR035089.538706
454 Sequencing (SRP001810)
264
351
+
Ser
GGA
[SRA]
>W2010613889
JABSSX010000007
Actinomycetota
Brevibacterium permense VKM Ac-2280 [JABSSX]
66403
66316
-
Ser
GGA
[ENA]
¡û
>W2010668516
JACBZP010000001
Actinomycetota
Spelaeicoccus albus DSM 26341 [JACBZP]
69752
69839
+
Ser
GGA
[ENA]
¡û
>W2010668683
JACBZS010000001
Actinomycetota
Naumannella cuiyingiana DSM 103164 [JACBZS]
2051195
2051108
-
Ser
GGA
[ENA]
¡û
>W2010670718
JACCBE010000001
Actinomycetota
Nocardioides marinisabuli DSM 18965 [JACCBE]
1649987
1649900
-
Ser
GGA
[ENA]
¡û
>SRA1039012
SRR035090.407438
454 Sequencing (SRP001811)
83
170
+
Ser
GGA
[SRA]
>W2011440396
RJSE01000007
Actinomycetota
Marmoricola ginsengisoli Gsoil 097 [RJSE]
314814
314727
-
Ser
GGA
[ENA]
¡û
>W2011447751
RKHO01000001
Actinomycetota
Marmoricola aurantiacus DSM 12652 [RKHO]
107349
107263
-
Ser
GGA
[ENA]
¡û
>SRA1045903
SRR035093.194065
454 Sequencing (SRP001814)
285
372
+
Ser
GGA
[SRA]
>W2011549826
SDPU01000036
Actinomycetota
Nocardioides iriomotensis NBRC 105384 [SDPU]
1614
1701
+
Ser
GGA
[ENA]
¡û
>W2011675978
SPUJ01000006
Actinomycetota
Nocardioides sp. 1609 [SPUJ]
184945
185032
+
Ser
GGA
[ENA]
¡û
>W2011753786
SZVU01000047
Actinomycetota
Nocardioides sp. 4053 [SZVU]
163
76
-
Ser
GGA
[ENA]
¡û
>W2012020945
VFOW01000001
Actinomycetota
Stackebrandtia endophytica DSM 45928 [VFOW]
2951789
2951702
-
Ser
GGA
[ENA]
¡û
>W2012049818
VIYJ01000001
Actinomycetota
Nocardioides rubriscoriae DSM 23986 [VIYJ]
640781
640868
+
Ser
GGA
[ENA]
¡û
>SRA1053520
SRR035098.425790
454 Sequencing (SRP001819)
99
12
-
Ser
GGA
[SRA]
>W2110109288
CAJHCD010000003
Actinomycetota
Gulosibacter sp. 401352-2018 [CAJHCD]
112571
112656
+
Ser
GGA
[ENA]
¡û
>W2110178505
JABGBS010000048
Actinomycetota
Brevibacterium casei NAB46 [JABGBS]
16229
16316
+
Ser
GGA
[ENA]
¡û
>W2110187130
JABUXY010000002
Actinomycetota
Brevibacterium aurantiacum FME43 [JABUXY]
178152
178239
+
Ser
GGA
[ENA]
¡û
>W2110187191
JABUXZ010000003
Actinomycetota
Brevibacterium aurantiacum FME45 [JABUXZ]
188269
188356
+
Ser
GGA
[ENA]
¡û
>W2110201554
JACDTV010000010
Actinomycetota
Nocardioides salarius DSM 18239 [JACDTV]
84094
84181
+
Ser
GGA
[ENA]
¡û
>W2110293198
JACYXZ010000004
Actinomycetota
Nocardioides sp. MJB4 [JACYXZ]
300320
300407
+
Ser
GGA
[ENA]
¡û
>W2110302008
JADBHG010000006
Actinomycetota
Brevibacterium renqingii REN4-1 [JADBHG]
64538
64453
-
Ser
GGA
[ENA]
¡û
>W2110303605
JADCLM010000010
Actinomycetota
Nocardioides salarius DSM 18239 [JADCLM]
84094
84181
+
Ser
GGA
[ENA]
¡û
>W2110458387
JAFBBZ010000001
Actinomycetota
Nocardioides salarius DSM 18239 [JAFBBZ]
1819625
1819712
+
Ser
GGA
[ENA]
¡û
>W2110484785
JAFEMW010000004
Actinomycetota
Brevibacterium sp. RIT 803 [JAFEMW]
294956
294870
-
Ser
GGA
[ENA]
¡û
>W2110493774
JAFFJT010000016
Actinomycetota
Nocardioides sp. SYSU D00038 [JAFFJT]
33583
33669
+
Ser
GGA
[ENA]
¡û
>W2110587692
JAHBAY010000001
Actinomycetota
Kineosporia sp. J2-2 [JAHBAY]
31382
31295
-
Ser
GGA
[ENA]
¡û
>W2110669920
JAIEZQ010000001
Actinomycetota
Nocardioides sp. WL0053 [JAIEZQ]
1274686
1274599
-
Ser
GGA
[ENA]
¡û
>C211336953
CP075371
Actinomycetota
Nocardioides aquaticus KCTC 9944 [CP075371]
382900
382814
-
Ser
GGA
-
¡û
>C211342157
CP076053
Actinomycetota
Nocardioidaceae bacterium TYQ2 [CP076053]
1758260
1758173
-
Ser
GGA
-
¡û
>C211350167
CP077062
Actinomycetota
Nocardioides sp. G188 [CP077062]
3860958
3861045
+
Ser
GGA
-
¡û
>C241138156
CP049867
Actinomycetota
Nocardioides sp. HDW12B [CP049867]
3443444
3443358
-
Ser
GGA
-
¡û
>W2130008127
CAJGWQ010000013
Actinomycetota
Gulosibacter sp. 401352-2018 [CAJGWQ]
46322
46237
-
Ser
GGA
[ENA]
¡û
>W2130008214
CAJHCF010000029
Actinomycetota
Gulosibacter sp. 401352-2018 [CAJHCF]
304
219
-
Ser
GGA
[ENA]
¡û
>C241176408
CP059163
Actinomycetota
Nocardioides marinisabuli DSM 18965 [CP059163]
1887974
1887887
-
Ser
GGA
-
¡û
>W2310010941
BNET01000002
Actinomycetota
Nocardioides sp. OK12 [BNET]
122433
122346
-
Ser
GGA
[ENA]
¡û
>W2310029146
BSTA01000002
Actinomycetota
Kineosporia sp. NBRC 101677 [BSTA]
31190
31103
-
Ser
GGA
[ENA]
¡û
>C161082890
CP015079
Actinomycetota
Nocardioides dokdonensis FR1436 [CP015079]
1597123
1597036
-
Ser
GGA
[Ensembl]
¡û
>W1610052713
BBID01000845
Actinomycetota
Kineosporia rhamnosa JCM 9954 [BBID]
1159
1246
+
Ser
GGA
[ENA]
¡û
>W1610052767
BBIE01001016
Actinomycetota
Kineosporia succinea JCM 9957 [BBIE]
490
577
+
Ser
GGA
[ENA]
¡û
>W1610052820
BBIF01001231
Actinomycetota
Kineosporia rhizophila JCM 9960 [BBIF]
1088
1001
-
Ser
GGA
[ENA]
¡û
>W1610067998
BCQZ01000002
Actinomycetota
Granulicoccus phenolivorans NBRC 107789 [BCQZ]
123169
123084
-
Ser
GGA
[ENA]
¡û
>W1610741118
LMRF01000005
Actinomycetota
Marmoricola sp. Leaf446 [LMRF]
50822
50909
+
Ser
GGA
[ENA]
¡û
>W1710049091
BBID01000845
Actinomycetota
Kineosporia rhamnosa JCM 9954 [BBID]
1159
1246
+
Ser
GGA
[ENA]
¡û
>W1710049145
BBIE01001016
Actinomycetota
Kineosporia succinea JCM 9957 [BBIE]
490
577
+
Ser
GGA
[ENA]
¡û
>W1710049198
BBIF01001231
Actinomycetota
Kineosporia rhizophila JCM 9960 [BBIF]
1088
1001
-
Ser
GGA
[ENA]
¡û
>W1710065371
BCQZ01000002
Actinomycetota
Granulicoccus phenolivorans NBRC 107789 [BCQZ]
123169
123084
-
Ser
GGA
[ENA]
¡û
>W1710083205
BDJE01000028
Actinomycetota
Nocardioides sp. PD653-B2 [BDJE]
97522
97609
+
Ser
GGA
[ENA]
¡û
>W1710083304
BDJG01000005
Actinomycetota
Nocardioides sp. PD653 [BDJG]
97522
97609
+
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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