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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.7112 (45 seq.)
>W131108958
APGP01000072
Bacillota
Caldicellulosiruptor sp. F32 [APGP]
10215
10123
-
Ser
GGA
[ENA]
¡û
>W131218298
ATXO01000006
Bacillota
Caldicellulosiruptor acetigenus DSM 7040 [ATXO]
23097
23005
-
Ser
GGA
[ENA]
¡û
>C006931
CP000679
Bacillota
Caldicellulosiruptor saccharolyticus DSM 8903 [CP000679]
330824
330732
-
Ser
GGA
[Ensembl]
¡û
>WENV180014329
FPIC01171050
[FPIC] soil metagenome; Soil
307
215
-
Ser
GGA
[ENA]
¢þ
>WENV181226161
OFDK01000122
[OFDK] hot springs metagenome; Yellowstone National Park, Wyoming, USA
28177
28269
+
Ser
GGA
[ENA]
¢þ
>WENV181285501
OFGS01001166
[OFGS] hot springs metagenome; Water and soil
1224
1316
+
Ser
GGA
[ENA]
¢þ
>WENV181410953
OGCI01008966
[OGCI] hot springs metagenome; Hot spring water
2806
2714
-
Ser
GGA
[ENA]
¢þ
>W09104530
AALW01000001
Bacillota
Caldicellulosiruptor saccharolyticus DSM 8903 [AALW]
35971
35879
-
Ser
GGA
[ENA]
¡û
>C191131135
CP034791
Bacillota
Caldicellulosiruptor changbaiensis CBS-Z [CP034791]
349073
348981
-
Ser
GGA
-
¡û
>W09113828
ABYZ01000010
Bacillota
Caldicellulosiruptor bescii DSM 6725 [ABYZ]
45986
46078
+
Ser
GGA
[ENA]
¡û
>C09100836
CP001393
Bacillota
Caldicellulosiruptor bescii DSM 6725 [CP001393]
2557901
2557993
+
Ser
GGA
[Ensembl]
¡û
>W1911244046
NSHA01000001
Bacillota
Caldicellulosiruptor bescii RKCB123 [NSHA]
1758270
1758178
-
Ser
GGA
[ENA]
¡û
>W1911244077
NSHB01000001
Bacillota
Caldicellulosiruptor bescii RKCB125 [NSHB]
2265809
2265901
+
Ser
GGA
[ENA]
¡û
>W1911244127
NSHC01000001
Bacillota
Caldicellulosiruptor bescii RKCB126 [NSHC]
2818780
2818872
+
Ser
GGA
[ENA]
¡û
>W1911244204
NSHD01000001
Bacillota
Caldicellulosiruptor bescii RKCB121 [NSHD]
309278
309186
-
Ser
GGA
[ENA]
¡û
>W1911244224
NSHE01000001
Bacillota
Caldicellulosiruptor bescii RKCB120 [NSHE]
2728887
2728979
+
Ser
GGA
[ENA]
¡û
>W1911572567
PDCA01000001
Bacillota
Caldicellulosiruptor bescii RKCB124 [PDCA]
218321
218229
-
Ser
GGA
[ENA]
¡û
>W1911572572
PDCB01000001
Bacillota
Caldicellulosiruptor bescii RKCB129 [PDCB]
605371
605463
+
Ser
GGA
[ENA]
¡û
>W1911572662
PDCD01000002
Bacillota
Caldicellulosiruptor bescii RKCB128 [PDCD]
304154
304062
-
Ser
GGA
[ENA]
¡û
>W1810052262
PDCC01000001
Bacillota
Caldicellulosiruptor bescii RKCB127 [PDCC]
2676661
2676569
-
Ser
GGA
[ENA]
¡û
>W1810071920
PEEZ01000002
Bacillota
Caldicellulosiruptor bescii RKCB131 [PEEZ]
258274
258182
-
Ser
GGA
[ENA]
¡û
>W1810071957
PEFA01000001
Bacillota
Caldicellulosiruptor bescii RKCB130 [PEFA]
1292412
1292320
-
Ser
GGA
[ENA]
¡û
>W1810367993
PVZD01000002
Bacillota
Caldicellulosiruptor bescii RKCB132 [PVZD]
393908
394000
+
Ser
GGA
[ENA]
¡û
>C10103652
CP002164
Bacillota
Caldicellulosiruptor obsidiansis OB47 [CP002164]
2339163
2339255
+
Ser
GGA
[Ensembl]
¡û
>C11105235
CP002219
Bacillota
Caldicellulosiruptor hydrothermalis 108 [CP002219]
477592
477500
-
Ser
GGA
[Ensembl]
¡û
>C11105384
CP002326
Bacillota
Caldicellulosiruptor acetigenus I77R1B [CP002326]
2138893
2138985
+
Ser
GGA
[Ensembl]
¡û
>C11105460
CP002330
Bacillota
Caldicellulosiruptor kronotskyensis 2002 [CP002330]
428983
428891
-
Ser
GGA
[Ensembl]
¡û
>C11105504
CP003001
Bacillota
Caldicellulosiruptor acetigenus 6A [CP003001]
354076
353984
-
Ser
GGA
[Ensembl]
¡û
>C11105505
CP003001
Bacillota
Caldicellulosiruptor acetigenus 6A [CP003001]
324246
324154
-
Ser
GGA
[Ensembl]
¡û
>C11105858
CP002216
Bacillota
Caldicellulosiruptor owensensis OL [CP002216]
2280369
2280461
+
Ser
GGA
[Ensembl]
¡û
>W11139391
AEKB01000015
Bacillota
Caldicellulosiruptor kronotskyensis 2002 [AEKB]
75253
75345
+
Ser
GGA
[ENA]
¡û
>W11139425
AEKC01000018
Bacillota
Caldicellulosiruptor acetigenus 177R1B [AEKC]
47146
47054
-
Ser
GGA
[ENA]
¡û
>W11139471
AEKD01000019
Bacillota
Caldicellulosiruptor acetigenus 6A [AEKD]
40501
40409
-
Ser
GGA
[ENA]
¡û
>W11139489
AEKD01000064
Bacillota
Caldicellulosiruptor acetigenus 6A [AEKD]
580
672
+
Ser
GGA
[ENA]
¡û
>W1511563956
LACM01000001
Bacillota
Caldicellulosiruptor danielii Wai35.B1 [LACM]
2806409
2806501
+
Ser
GGA
[ENA]
¡û
>W1511564032
LACN01000012
Bacillota
Caldicellulosiruptor naganoensis NA10 [LACN]
400465
400373
-
Ser
GGA
[ENA]
¡û
>W1511564033
LACO01000001
Bacillota
Caldicellulosiruptor morganii Rt8.B8 [LACO]
45918
46010
+
Ser
GGA
[ENA]
¡û
>W1710603768
FUZJ01000001
Bacillota
Caldicellulosiruptor bescii [FUZJ]
744213
744121
-
Ser
GGA
[ENA]
¡û
>W1710603810
FUZL01000001
Bacillota
Caldicellulosiruptor bescii [FUZL]
1713069
1713161
+
Ser
GGA
[ENA]
¡û
>W1710603907
FUZN01000002
Bacillota
Caldicellulosiruptor bescii [FUZN]
2666377
2666469
+
Ser
GGA
[ENA]
¡û
>W1710605068
FWDH01000001
Bacillota
Caldicellulosiruptor bescii [FWDH]
1723407
1723499
+
Ser
GGA
[ENA]
¡û
>W1710609690
FXXC01000001
Bacillota
Caldicellulosiruptor bescii [FXXC]
662855
662763
-
Ser
GGA
[ENA]
¡û
>W1710609694
FXXD01000002
Bacillota
Caldicellulosiruptor bescii [FXXD]
310778
310870
+
Ser
GGA
[ENA]
¡û
>W1710609758
FXXE01000001
Bacillota
Caldicellulosiruptor bescii [FXXE]
2829834
2829926
+
Ser
GGA
[ENA]
¡û
>W1710609804
FXXF01000001
Bacillota
Caldicellulosiruptor bescii [FXXF]
2822379
2822471
+
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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