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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.7997 (104 seq.)
>W1710863637
LMFH01000005
Gammaproteobacteria
Lysobacter sp. Root494 [LMFH]
418028
418120
+
Ser
GCT
[ENA]
¡û
>W1710864807
LMGE01000001
Gammaproteobacteria
Lysobacter sp. Root559 [LMGE]
268326
268234
-
Ser
GCT
[ENA]
¡û
>W1710865493
LMGS01000001
Gammaproteobacteria
Lysobacter sp. Root604 [LMGS]
1597309
1597217
-
Ser
GCT
[ENA]
¡û
>W1710866111
LMHF01000012
Gammaproteobacteria
Lysobacter sp. Root667 [LMHF]
196961
196869
-
Ser
GCT
[ENA]
¡û
>W1710867585
LMIK01000001
Gammaproteobacteria
Lysobacter sp. Root76 [LMIK]
372484
372392
-
Ser
GCT
[ENA]
¡û
>W1710868610
LMJF01000001
Gammaproteobacteria
Lysobacter sp. Root916 [LMJF]
1596814
1596722
-
Ser
GCT
[ENA]
¡û
>W1710868954
LMJN01000002
Gammaproteobacteria
Lysobacter sp. Root96 [LMJN]
859187
859095
-
Ser
GCT
[ENA]
¡û
>W1710868997
LMJO01000001
Gammaproteobacteria
Lysobacter sp. Root983 [LMJO]
986915
986823
-
Ser
GCT
[ENA]
¡û
>W1711220367
LXQJ01000051
Gammaproteobacteria
Luteimonas sp. ANT-B3E [LXQJ]
15860
15768
-
Ser
GCT
[ENA]
¡û
>W131231910
AUIV01000008
Gammaproteobacteria
Thermomonas fusca DSM 15424 [AUIV]
105187
105095
-
Ser
GCT
[ENA]
¡û
>WENV180041020
LLBZ010035405
[LLBZ] soil metagenome; soil from tomato rhizosphere
96
4
-
Ser
GCT
[ENA]
¡û
>WENV180291218
OBIV01021029
[OBIV] soil metagenome; Clay
436
344
-
Ser
GCT
[ENA]
¡û
>WENV180690967
OCZS010042287
[OCZS] soil metagenome; soil
983
1075
+
Ser
GCT
[ENA]
¡û
>W141149608
AWZR01000003
Gammaproteobacteria
Luteimonas sp. J29 [AWZR]
362774
362682
-
Ser
GCT
[ENA]
¡û
>W141274348
JAAN01000015
Gammaproteobacteria
Luteimonas huabeiensis HB2 [JAAN]
101147
101239
+
Ser
GCT
[ENA]
¡û
>WENV183748075
PPFU01010186
[PPFU] hypolithon metagenome; Antarctic Hypolithon
18881
18973
+
Ser
GCT
[ENA]
¡û
>WENV170010097
APMI01008461
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
1698
1790
+
Ser
GCT
[ENA]
¡û
>WENV170010227
APMI01011098
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
1720
1628
-
Ser
GCT
[ENA]
¡û
>WENV170574334
FLYM01026738
[FLYM] hot springs metagenome; Sediment
478
570
+
Ser
GCT
[ENA]
¡û
>WENV170723272
LSQX01262764
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
176
84
-
Ser
GCT
[ENA]
¡û
>WENV170725071
LSQX01329449
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
3944
4036
+
Ser
GCT
[ENA]
¡û
>C181021719
CP016836
Gammaproteobacteria
Xanthomonas citri pv. mangiferaeindicae XC01 [CP016836]
238264
238172
-
Ser
GCT
-
¡û
>C181180376
CP029556
Gammaproteobacteria
Lysobacter oculi 83-4 [CP029556]
1215298
1215390
+
Ser
GCT
-
¡û
>C181200080
CP031413
Gammaproteobacteria
Lysobacter sp. TY2-98 [CP031413]
1391646
1391554
-
Ser
GCT
-
¡û
>C191139363
CP035376
Gammaproteobacteria
Luteimonas sp. YGD11-2 [CP035376]
1142168
1142260
+
Ser
GCT
-
¡û
>C191165668
CP039383
Gammaproteobacteria
Luteimonas yindakuii S-1072 [CP039383]
1123245
1123337
+
Ser
GCT
-
¡û
>C191183296
CP040871
Gammaproteobacteria
Thermomonas aquatica SY21 [CP040871]
2881218
2881310
+
Ser
GCT
-
¡û
>W1911162530
NPZB01000002
Gammaproteobacteria
Lysobacter sp. AM20-91 [NPZB]
481592
481684
+
Ser
GCT
[ENA]
¡û
>W1911405232
NWQL01000002
Gammaproteobacteria
Xanthomonadaceae bacterium NML91-0213 [NWQL]
208399
208307
-
Ser
GCT
[ENA]
¡û
>W1911405342
NWQO01000001
Gammaproteobacteria
Xanthomonadaceae bacterium NML91-0268 [NWQO]
492142
492234
+
Ser
GCT
[ENA]
¡û
>W1911405477
NWQR01000001
Gammaproteobacteria
Xanthomonadaceae bacterium NML08-0793 [NWQR]
191968
192060
+
Ser
GCT
[ENA]
¡û
>W1911770890
QXJI01000001
Gammaproteobacteria
Lysobacter sp. C8-1 [QXJI]
1157692
1157600
-
Ser
GCT
[ENA]
¡û
>SRA1001731
SRR001308.20936
Metagenomic characterization of a wastewater treatment plant (SRP000180)
97
189
+
Ser
GCT
[SRA]
>SRA1004294
SRR002328.254527
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
98
6
-
Ser
GCT
[SRA]
>W1810858417
QTJR01000001
Gammaproteobacteria
Lysobacter soli KCTC 22011 [QTJR]
452592
452500
-
Ser
GCT
[ENA]
¡û
>W1810860376
QTSU01000001
Gammaproteobacteria
Lysobacter silvisoli zong2l5 [QTSU]
1640159
1640067
-
Ser
GCT
[ENA]
¡û
>W1810914477
QVPD01000007
Gammaproteobacteria
Luteimonas weifangensis WF-2 [QVPD]
21399
21307
-
Ser
GCT
[ENA]
¡û
>W2010523068
JAANOY010000004
Gammaproteobacteria
Lysobacter sp. YJ15 [JAANOY]
64823
64731
-
Ser
GCT
[ENA]
¡û
>W2010717821
JACHYJ010000002
Gammaproteobacteria
Luteimonas sp. RC10 [JACHYJ]
525832
525740
-
Ser
GCT
[ENA]
¡û
>W2011028703
NPZB01000002
Gammaproteobacteria
Lysobacter sp. AM20-91 [NPZB]
481592
481684
+
Ser
GCT
[ENA]
¡û
>W2011135225
NWQL01000002
Gammaproteobacteria
Xanthomonadaceae bacterium NML91-0213 [NWQL]
208399
208307
-
Ser
GCT
[ENA]
¡û
>W2011328190
QXJI01000001
Gammaproteobacteria
Lysobacter sp. C8-1 [QXJI]
1157692
1157600
-
Ser
GCT
[ENA]
¡û
>W2011416873
RFLY01000014
Gammaproteobacteria
Lysobacter sp. 4284/11 [RFLY]
23653
23561
-
Ser
GCT
[ENA]
¡û
>W2011453532
RKQN01000001
Gammaproteobacteria
Vulcaniibacterium tengchongense DSM 25623 [RKQN]
571661
571753
+
Ser
GCT
[ENA]
¡û
>W2011538090
SCMS01000030
Gammaproteobacteria
Xanthomonadaceae bacterium 2PA [SCMS]
44239
44331
+
Ser
GCT
[ENA]
¡û
>W2011538144
SCMT01000027
Gammaproteobacteria
Xanthomonadaceae bacterium 2PB [SCMT]
4545
4453
-
Ser
GCT
[ENA]
¡û
>W2011540991
SCOX01000004
Gammaproteobacteria
Xanthomonadaceae bacterium P [SCOX]
163043
163135
+
Ser
GCT
[ENA]
¡û
>W2011611707
SJRW01000001
Gammaproteobacteria
Luteimonas arsenica 26-35 [SJRW]
966871
966963
+
Ser
GCT
[ENA]
¡û
>W2011640388
SMTF01000001
Gammaproteobacteria
Luteimonas aestuarii B9 [SMTF]
256499
256407
-
Ser
GCT
[ENA]
¡û
>W2011675849
SPUH01000001
Gammaproteobacteria
Luteimonas sp. 1626 [SPUH]
363811
363903
+
Ser
GCT
[ENA]
¡û
>W2011679802
SROY01000003
Gammaproteobacteria
Thermomonas fusca SHC 3-19 [SROY]
750
658
-
Ser
GCT
[ENA]
¡û
>W2011705659
SWJS01000001
Gammaproteobacteria
Xanthomonadaceae bacterium CU05-9 [SWJS]
348525
348617
+
Ser
GCT
[ENA]
¡û
>W2011752829
SZUA01000001
Gammaproteobacteria
Luteimonas sp. H23 [SZUA]
1069095
1069003
-
Ser
GCT
[ENA]
¡û
>W2012080268
VLJO01000056
Gammaproteobacteria
Luteimonas sp. J16 [VLJO]
47084
46992
-
Ser
GCT
[ENA]
¡û
>W2012081564
VLKN01000002
Gammaproteobacteria
Luteimonas cucumeris CGMCC 1.10821 [VLKN]
324312
324220
-
Ser
GCT
[ENA]
¡û
>W2012084331
VLNU01000001
Gammaproteobacteria
Lysobacter panacisoli JCM 19212 [VLNU]
2784441
2784533
+
Ser
GCT
[ENA]
¡û
>W2012084369
VLNV01000001
Gammaproteobacteria
Lysobacter sp. SYSU H10001 [VLNV]
34030
34122
+
Ser
GCT
[ENA]
¡û
>W2012098644
VNKP01000004
Gammaproteobacteria
Vulcaniibacterium tengchongense YIM 77520 [VNKP]
53292
53384
+
Ser
GCT
[ENA]
¡û
>W2012103020
VOHE01000001
Gammaproteobacteria
Luteimonas sp. YD-1 [VOHE]
354261
354169
-
Ser
GCT
[ENA]
¡û
>W2012103134
VOHK01000004
Gammaproteobacteria
Luteimonas marina FR1330 [VOHK]
12763
12671
-
Ser
GCT
[ENA]
¡û
>W2012139444
VTFT01000002
Gammaproteobacteria
Luteimonas sp. XBU10 [VTFT]
91609
91701
+
Ser
GCT
[ENA]
¡û
>W2110048386
BMXY01000001
Gammaproteobacteria
Lysobacter xinjiangensis KCTC 22558 [BMXY]
1197255
1197163
-
Ser
GCT
[ENA]
¡û
>W2110050798
BMZT01000001
Gammaproteobacteria
Luteimonas padinae KCTC 52403 [BMZT]
254116
254208
+
Ser
GCT
[ENA]
¡û
>W2110260447
JACSQJ010000005
Gammaproteobacteria
Luteimonas sp. Sa2BVA3 [JACSQJ]
210468
210376
-
Ser
GCT
[ENA]
¡û
>W2110336680
JADLZT010000005
Gammaproteobacteria
Lysobacter niastensis DSM 18481 [JADLZT]
75111
75203
+
Ser
GCT
[ENA]
¡û
>W2110394216
JADWPE010000002
Gammaproteobacteria
Lysobacter sp. Cm-3-T8 [JADWPE]
147005
146913
-
Ser
GCT
[ENA]
¡û
>W2110427609
JAEMDY010000001
Gammaproteobacteria
Luteimonas sp. MC1895 [JAEMDY]
636381
636289
-
Ser
GCT
[ENA]
¡û
>W2110427664
JAEMDZ010000002
Gammaproteobacteria
Luteimonas sp. MC1750 [JAEMDZ]
289337
289429
+
Ser
GCT
[ENA]
¡û
>W2110445445
JAERQY020000001
Gammaproteobacteria
Lysobacter sp. MMG2 [JAERQY]
511439
511347
-
Ser
GCT
[ENA]
¡û
>W2110454111
JAETWA010000014
Gammaproteobacteria
Luteimonas sp. SJ-9 [JAETWA]
89816
89908
+
Ser
GCT
[ENA]
¡û
>W2110567364
JAGQFT020000015
Gammaproteobacteria
Coralloluteibacterium stylophorae LMG 29479 [JAGQFT]
4522
4430
-
Ser
GCT
[ENA]
¡û
>W2110692723
JAIQDJ010000002
Gammaproteobacteria
Thermomonas sp. RSS23 [JAIQDJ]
206108
206200
+
Ser
GCT
[ENA]
¡û
>C201107326
CP042218
Gammaproteobacteria
Luteimonas sp. Gr-4 [CP042218]
617441
617349
-
Ser
GCT
-
¡û
>C211021207
AP024545
Gammaproteobacteria
Lysobacter caseinilyticus KVB24 [AP024545]
2483818
2483910
+
Ser
GCT
-
¡û
>C211021254
AP024546
Gammaproteobacteria
Lysobacter helvus D10 [AP024546]
2483796
2483888
+
Ser
GCT
-
¡û
>C211137386
CP060711
Gammaproteobacteria
Thermomonas brevis KACC 16975 [CP060711]
3070987
3071079
+
Ser
GCT
-
¡û
>C211139531
CP060820
Gammaproteobacteria
Lysobacter solisilvae (ex Woo and Kim 2020) II4 [CP060820]
2722435
2722527
+
Ser
GCT
-
¡û
>C211147935
CP061497
Gammaproteobacteria
Thermomonas sp. XSG [CP061497]
2653338
2653430
+
Ser
GCT
-
¡û
>C211236438
CP067113
Gammaproteobacteria
Luteimonas sp. MC1750 [CP067113]
1143640
1143732
+
Ser
GCT
-
¡û
>C211292415
CP071517
Gammaproteobacteria
Lysobacter arenosi R7 [CP071517]
541932
542024
+
Ser
GCT
-
¡û
>C211292463
CP071518
Gammaproteobacteria
Lysobacter solisilvae R19 [CP071518]
2501584
2501676
+
Ser
GCT
-
¡û
>W2110717457
JAJAVH010000017
Gammaproteobacteria
Luteimonas panaciterrae Gsoil 068 [JAJAVH]
48794
48886
+
Ser
GCT
[ENA]
¡û
>C231266506
CP089924
Gammaproteobacteria
Lysobacter sp. 5GHs7-4 [CP089924]
3110165
3110073
-
Ser
GCT
-
¡û
>C231266538
CP089925
Gammaproteobacteria
Lysobacter sp. KIS68-7 [CP089925]
2142002
2142094
+
Ser
GCT
-
¡û
>C231294152
CP091317
Gammaproteobacteria
Lysobacter soli RCu6 [CP091317]
3316996
3316904
-
Ser
GCT
-
¡û
>C231331307
CP093311
Gammaproteobacteria
Thermomonas sp. IMCC34681 [CP093311]
986496
986588
+
Ser
GCT
-
¡û
>C231332283
CP093340
Gammaproteobacteria
Luteimonas sp. S4-F44 [CP093340]
2428407
2428315
-
Ser
GCT
-
¡û
>C231332343
CP093341
Gammaproteobacteria
Lysobacter sp. S4-A87 [CP093341]
995645
995553
-
Ser
GCT
-
¡û
>C241111562
CP046603
Gammaproteobacteria
Lysobacter soli XL170 [CP046603]
1442534
1442626
+
Ser
GCT
-
¡û
>C241138026
CP049864
Gammaproteobacteria
Lysobacter sp. HDW10 [CP049864]
2154989
2154897
-
Ser
GCT
-
¡û
>C241138373
CP049872
Gammaproteobacteria
Thermomonas sp. HDW16 [CP049872]
1366913
1367005
+
Ser
GCT
-
¡û
>W1511582568
LASZ01000009
Gammaproteobacteria
Luteimonas sp. FCS-9 [LASZ]
49072
48980
-
Ser
GCT
[ENA]
¡û
>W1610725983
LMFH01000005
Gammaproteobacteria
Lysobacter sp. Root494 [LMFH]
418028
418120
+
Ser
GCT
[ENA]
¡û
>W1610727153
LMGE01000001
Gammaproteobacteria
Lysobacter sp. Root559 [LMGE]
268326
268234
-
Ser
GCT
[ENA]
¡û
>W1610727839
LMGS01000001
Gammaproteobacteria
Lysobacter sp. Root604 [LMGS]
1597309
1597217
-
Ser
GCT
[ENA]
¡û
>W1610728457
LMHF01000012
Gammaproteobacteria
Lysobacter sp. Root667 [LMHF]
196961
196869
-
Ser
GCT
[ENA]
¡û
>W1610729931
LMIK01000001
Gammaproteobacteria
Lysobacter sp. Root76 [LMIK]
372484
372392
-
Ser
GCT
[ENA]
¡û
>W1610730956
LMJF01000001
Gammaproteobacteria
Lysobacter sp. Root916 [LMJF]
1596814
1596722
-
Ser
GCT
[ENA]
¡û
>W1610731300
LMJN01000002
Gammaproteobacteria
Lysobacter sp. Root96 [LMJN]
859187
859095
-
Ser
GCT
[ENA]
¡û
>W1610731343
LMJO01000001
Gammaproteobacteria
Lysobacter sp. Root983 [LMJO]
986915
986823
-
Ser
GCT
[ENA]
¡û
>W1611004839
LXQJ01000051
Gammaproteobacteria
Luteimonas sp. ANT-B3E [LXQJ]
15860
15768
-
Ser
GCT
[ENA]
¡û
>W1710567411
FOSS01000003
Gammaproteobacteria
Lysobacter sp. cf310 [FOSS]
655503
655411
-
Ser
GCT
[ENA]
¡û
>W1710582962
FQUK01000004
Gammaproteobacteria
Thermomonas hydrothermalis [FQUK]
11597
11689
+
Ser
GCT
[ENA]
¡û
>W1710595301
FTLW01000001
Gammaproteobacteria
Lysobacter tolerans [FTLW]
555543
555451
-
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK