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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.95795 (24 seq.)
>W131162319
AQYO01000067
Unclassified
Cloacimonetes bacterium JGI 0000039-A21 WWE1 bacterium JGI 0000039-A21 [AQYO]
2467
2382
-
Ser
TGA
[ENA]
¡û
>W131162340
AQYP01000116
Unclassified
Cloacimonetes bacterium JGI 0000039-G13 WWE1 bacterium JGI 0000039-G13 [AQYP]
525
610
+
Ser
TGA
[ENA]
¡û
>W1711136039
LUZS01000112
Unclassified
Cloacimonetes bacterium WWEI_01 [LUZS]
159
244
+
Ser
TGA
[ENA]
¡û
>W131192600
ASMF01000003
Unclassified
Cloacimonetes bacterium JGI 0000059-L07 WWE1 bacterium JGI 0000059-L07 [ASMF]
40409
40324
-
Ser
TGA
[ENA]
¡û
>W131192611
ASMG01000001
Unclassified
Cloacimonetes bacterium JGI 0000059-P03 WWE1 bacterium JGI 0000059-P03 [ASMG]
241
326
+
Ser
TGA
[ENA]
¡û
>WENV180094409
MTBK01005587
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
474
389
-
Ser
TGA
[ENA]
¡û
>WENV180095880
MTBK01095493
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
154
69
-
Ser
TGA
[ENA]
¡û
>WENV180096077
MTBK01107718
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
1455
1540
+
Ser
TGA
[ENA]
¡û
>WENV180096447
MTBK01129902
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
12210
12295
+
Ser
TGA
[ENA]
¡û
>WENV180098262
MTBK01235861
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
474
389
-
Ser
TGA
[ENA]
¡û
>WENV180298902
OBJA01762005
[OBJA] soil metagenome; sediment, water from around vicinity
3
88
+
Ser
TGA
[ENA]
¡û
>WENV181311693
OFJB01008559
[OFJB] sludge metagenome; sludge
1480
1565
+
Ser
TGA
[ENA]
¡û
>W141139470
AWNP01000017
Unclassified
Cloacimonetes bacterium JGI OTU-3 [AWNP]
525
610
+
Ser
TGA
[ENA]
¡û
>WENV170670706
LAHT01141485
[LAHT] activated sludge metagenome; Sample C-4; Sludge from methanogenic chamber (fourth chamber) of Anaerobic Baffled Reactor over
207
122
-
Ser
TGA
[ENA]
¡û
>WENV170671266
LAHU01031397
[LAHU] activated sludge metagenome; sample C-0; Zero hour mixed sludge faded in reactor as a methanogenic microbial inoculum from
2030
2115
+
Ser
TGA
[ENA]
¡û
>WENV170719455
LSQX01115365
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
9084
8999
-
Ser
TGA
[ENA]
¡û
>WENV170720238
LSQX01145750
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
2406
2321
-
Ser
TGA
[ENA]
¡û
>WENV170721176
LSQX01181955
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
5927
6012
+
Ser
TGA
[ENA]
¡û
>WENV170974474
MTKY01063058
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
6164
6249
+
Ser
TGA
[ENA]
¡û
>WENV170977442
MTKZ01023476
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
6448
6363
-
Ser
TGA
[ENA]
¡û
>C151097936
CU466930
Unclassified
Candidatus Cloacimonas acidaminovorans str. Evry [CU466930]
53170
53255
+
Ser
TGA
-
¡û
>W2011639209
SMOG01000001
Unclassified
Candidatus Cloacimonetes bacterium W5 [SMOG]
2579
2664
+
Ser
TGA
[ENA]
¡û
>W1610947159
LUZS01000112
Unclassified
Cloacimonetes bacterium WWEI_01 [LUZS]
159
244
+
Ser
TGA
[ENA]
¡û
>ENV003089
CU466930
Environmental sample from ENV division of INSDC
53170
53255
+
Ser
TGA
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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