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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.98424 (57 seq.)
>W131169695
AREX01000011
Betaproteobacteria
Uliginosibacterium gangwonense DSM 18521 [AREX]
27696
27779
+
Leu
CAA
[ENA]
¡û
>C171085149
CP018839
Betaproteobacteria
Thauera chlorobenzoica 3CB1 [CP018839]
966107
966191
+
Leu
CAA
-
¡û
>W131050784
AMXB01000045
Betaproteobacteria
Thauera sp. 27 [AMXB]
5754
5838
+
Leu
CAA
[ENA]
¡û
>W131050837
AMXC01000041
Betaproteobacteria
Thauera sp. 63 [AMXC]
13973
13889
-
Leu
CAA
[ENA]
¡û
>W131050871
AMXD01000046
Betaproteobacteria
Thauera aminoaromatica S2 [AMXD]
22232
22316
+
Leu
CAA
[ENA]
¡û
>W131050935
AMXE01000036
Betaproteobacteria
Thauera linaloolentis 47Lol = DSM 12138 [AMXE]
8736
8652
-
Leu
CAA
[ENA]
¡û
>W131051001
AMXF01000320
Betaproteobacteria
Thauera phenylacetica B4P [AMXF]
697
613
-
Leu
CAA
[ENA]
¡û
>W131170343
ARFL01000003
Betaproteobacteria
Methyloversatilis discipulorum RZ94 [ARFL]
315748
315664
-
Leu
CAA
[ENA]
¡û
>C001281
AM406670
Betaproteobacteria
Azoarcus olearius BH72 [AM406670]
973414
973498
+
Leu
CAA
[Ensembl]
¡û
>W131166914
ARCV01000004
Betaproteobacteria
Methyloversatilis thermotolerans NVD [ARCV]
595669
595585
-
Leu
CAA
[ENA]
¡û
>W131186090
ARVV01000001
Betaproteobacteria
Methyloversatilis discipulorum RZ18-153 [ARVV]
1121195
1121279
+
Leu
CAA
[ENA]
¡û
>W131223773
AUCH01000016
Betaproteobacteria
Azovibrio restrictus DSM 23866 [AUCH]
64868
64784
-
Leu
CAA
[ENA]
¡û
>WENV180000114
CZVZ01000901
[CZVZ] metagenome; unknown
317
401
+
Leu
CAA
[ENA]
¢þ
>WENV180285167
OBID01257331
[OBID] metagenome; sludge
75
159
+
Leu
CAA
[ENA]
¢þ
>W08007992
ABKT01000005
Betaproteobacteria
Thauera sp. MZ1T [ABKT] MZ1T [ABKT]
81245
81164
-
Leu
CAA
[ENA]
¡û
>W141216099
AZUP01000001
Betaproteobacteria
Methyloversatilis discipulorum FAM1 [AZUP]
1939838
1939754
-
Leu
CAA
[ENA]
¡û
>WENV170009702
APMI01001999
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
819
735
-
Leu
CAA
[ENA]
¢þ
>WENV170010072
APMI01007752
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
4992
5076
+
Leu
CAA
[ENA]
¢þ
>WENV170011839
APMI01095670
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
33
117
+
Leu
CAA
[ENA]
¢þ
>WENV170561016
CZCA01001998
[CZCA] anaerobic digester metagenome; anaerobic digester
14292
14208
-
Leu
CAA
[ENA]
¢þ
>WENV170639377
JFJP01002159
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
11174
11258
+
Leu
CAA
[ENA]
¢þ
>WENV170650681
JRYE01009770
[JRYE] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 4 ppm DO
442
526
+
Leu
CAA
[ENA]
¢þ
>WENV170650682
JRYE01009771
[JRYE] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 4 ppm DO
169
253
+
Leu
CAA
[ENA]
¢þ
>WENV170651660
JRYG01000283
[JRYG] activated sludge metagenome; activated biomass of a wastewater treatment plant treating hydrocarbon contaminated
11189
11273
+
Leu
CAA
[ENA]
¢þ
>WENV170652661
JRYH01012035
[JRYH] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater generated at dyes and
1984
1900
-
Leu
CAA
[ENA]
¢þ
>WENV170654723
JRYL01009466
[JRYL] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater from different
2600
2516
-
Leu
CAA
[ENA]
¢þ
>WENV170714316
LNFM01067393
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
2041
2124
+
Leu
CAA
[ENA]
¢þ
>WENV170714378
LNFM01070402
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
1859
1943
+
Leu
CAA
[ENA]
¢þ
>C181081435
CP023439
Betaproteobacteria
Thauera sp. K11 [CP023439]
448516
448600
+
Leu
CAA
-
¡û
>C181164156
CP028339
Betaproteobacteria
Thauera aromatica K172 [CP028339]
1014422
1014506
+
Leu
CAA
-
¡û
>C181187379
CP030061
Betaproteobacteria
Zoogloea oryzae NBRC 102407 [CP030061]
527237
527321
+
Leu
CAA
-
¡û
>C191019176
CP021731
Betaproteobacteria
Azoarcus sp. DN11 [CP021731]
3916725
3916641
-
Leu
CAA
-
¡û
>C191022873
CP022958
Betaproteobacteria
Azoarcus sp. DD4 [CP022958]
1150796
1150880
+
Leu
CAA
-
¡û
>W141561741
JHYR01000024
Betaproteobacteria
Thauera linaloolentis 47Lol = DSM 12138 [JHYR]
9026
8942
-
Leu
CAA
[ENA]
¡û
>W1910128379
BHVV01000003
Betaproteobacteria
Sulfurisoma sediminicola BSN1 [BHVV]
276674
276758
+
Leu
CAA
[ENA]
¡û
>W1910183550
BJNV01000012
Betaproteobacteria
Zoogloea ramigera NBRC 15342 [BJNV]
91425
91341
-
Leu
CAA
[ENA]
¡û
>W1910828090
MWUM01000030
Betaproteobacteria
Zoogloea sp. LCSB751 [MWUM]
45469
45553
+
Leu
CAA
[ENA]
¡û
>W1911114385
NOIH01000026
Betaproteobacteria
Thauera propionica KNDSS-Mac4 [NOIH]
140198
140114
-
Leu
CAA
[ENA]
¡û
>W1810005474
BFBP01000002
Betaproteobacteria
Azospira sp. I13 [BFBP]
170624
170540
-
Leu
CAA
[ENA]
¡û
>SRA1002314
SRR001308.371072
Metagenomic characterization of a wastewater treatment plant (SRP000180)
162
246
+
Leu
CAA
[SRA]
>W1810195597
PKRR01000002
Betaproteobacteria
Uliginosibacterium sp. TH139 [PKRR]
48643
48559
-
Leu
CAA
[ENA]
¡û
>W1810444918
PZKC01000011
Betaproteobacteria
Pseudothauera lacus D20 [PZKC]
83892
83976
+
Leu
CAA
[ENA]
¡û
>W1810679137
QKOE01000001
Betaproteobacteria
Parazoarcus communis SWub3 [QKOE]
400305
400221
-
Leu
CAA
[ENA]
¡û
>C151076190
CP011072
Betaproteobacteria
Azoarcus sp. CIB [CP011072]
4210138
4210054
-
Leu
CAA
-
¡û
>C10113194
CP001281
Betaproteobacteria
Thauera aminoaromatica MZ1T [CP001281]
3725619
3725535
-
Leu
CAA
[Ensembl]
¡û
>W1511686450
LFRJ01000015
Betaproteobacteria
Thauera humireducens SgZ-1 [LFRJ]
1475220
1475304
+
Leu
CAA
[ENA]
¡û
>W11162800
AFHG01000028
Betaproteobacteria
Methyloversatilis universalis FAM5 [AFHG]
149857
149941
+
Leu
CAA
[ENA]
¡û
>W11185909
CACR01001556
Betaproteobacteria
Thauera selenatis AX [CACR]
4123
4039
-
Leu
CAA
[ENA]
¡û
>C161075103
CP014646
Betaproteobacteria
Thauera humireducens SgZ-1 [CP014646]
4020474
4020558
+
Leu
CAA
[Ensembl]
¡û
>C161095068
CP016210
Betaproteobacteria
Azoarcus olearius DQS-4 [CP016210]
1013070
1013154
+
Leu
CAA
-
¡û
>W1610071690
BCUG01000016
Betaproteobacteria
Thauera butanivorans NBRC 103042 [BCUG]
59976
60060
+
Leu
CAA
[ENA]
¡û
>C131000318
AP012304
Betaproteobacteria
Azoarcus sp. KH32C [AP012304]
4101222
4101138
-
Leu
CAA
[Ensembl]
¡û
>W1610617590
LGUD01000007
Betaproteobacteria
Rhodocyclaceae bacterium Paddy-1 [LGUD]
13789
13873
+
Leu
CAA
[ENA]
¡û
>W1710068892
BCUG01000016
Betaproteobacteria
Thauera butanivorans NBRC 103042 [BCUG]
59976
60060
+
Leu
CAA
[ENA]
¡û
>W1710539449
FNVJ01000004
Betaproteobacteria
Thauera chlorobenzoica [FNVJ]
117163
117247
+
Leu
CAA
[ENA]
¡û
>W1710595736
FTMD01000006
Betaproteobacteria
Aromatoleum tolulyticum tolulyticus [FTMD]
124084
124168
+
Leu
CAA
[ENA]
¡û
>W1710743140
LGUD01000007
Betaproteobacteria
Rhodocyclaceae bacterium Paddy-1 [LGUD]
13789
13873
+
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK