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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001805)
Anticodon = CGT
HIT:
9 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.381076 (1 seq.)
>SRA1023190
SRR035084.32338
454 Sequencing (SRP001805)
5
81
+
Thr
CGT
[SRA]
Identical group No.471177 (49 seq.)
>WENV180650219
OCSY01000194
[OCSY] marine metagenome; 30 L Plastic container
922
995
+
Thr
CGT
[ENA]
¢þ
>WENV181322066
OFKP01002749
[OFKP] marine metagenome; sea ice
921
994
+
Thr
CGT
[ENA]
¢þ
>WENV181322662
OFKT01014520
[OFKT] marine metagenome; sea ice
7
80
+
Thr
CGT
[ENA]
¢þ
>WENV181323545
OFKY01005803
[OFKY] marine metagenome; sea ice
627
700
+
Thr
CGT
[ENA]
¢þ
>WENV181323794
OFKZ01006283
[OFKZ] marine metagenome; sea ice
459
532
+
Thr
CGT
[ENA]
¢þ
>WENV181324198
OFLC01005521
[OFLC] marine metagenome; melt pond
116
189
+
Thr
CGT
[ENA]
¢þ
>WENV181324434
OFLE01010223
[OFLE] marine metagenome; sea ice
411
338
-
Thr
CGT
[ENA]
¢þ
>WENV181324547
OFLF01001386
[OFLF] marine metagenome; melt pond
641
714
+
Thr
CGT
[ENA]
¢þ
>WENV181324815
OFLH01010551
[OFLH] marine metagenome; sea ice
528
455
-
Thr
CGT
[ENA]
¢þ
>WENV181325130
OFLI01008829
[OFLI] seawater metagenome; seawater
412
485
+
Thr
CGT
[ENA]
¢þ
>WENV181325562
OFLJ01005256
[OFLJ] seawater metagenome; seawater
272
345
+
Thr
CGT
[ENA]
¢þ
>WENV181391131
OFRQ01042626
[OFRQ] seawater metagenome; seawater
292
219
-
Thr
CGT
[ENA]
¢þ
>WENV181391431
OFRT01006531
[OFRT] seawater metagenome; seawater
487
560
+
Thr
CGT
[ENA]
¢þ
>WENV181392792
OFRX01005790
[OFRX] seawater metagenome; seawater
517
444
-
Thr
CGT
[ENA]
¢þ
>WENV183615761
OOEB01134425
[OOEB] marine metagenome; sea ice
156
83
-
Thr
CGT
[ENA]
¢þ
>WENV183618094
OOFL01021460
[OOFL] marine metagenome; seawater
277
204
-
Thr
CGT
[ENA]
¢þ
>WENV183618575
OOFO01008888
[OOFO] marine metagenome; seawater
488
415
-
Thr
CGT
[ENA]
¢þ
>WENV183618940
OOFP01005507
[OOFP] marine metagenome; seawater
487
560
+
Thr
CGT
[ENA]
¢þ
>WENV183619428
OOFQ01005283
[OOFQ] marine metagenome; seawater
272
345
+
Thr
CGT
[ENA]
¢þ
>WENV183620043
OOFR01003098
[OOFR] marine metagenome; seawater
628
555
-
Thr
CGT
[ENA]
¢þ
>WENV183620900
OOFT01000013
[OOFT] marine metagenome; sea ice
32186
32259
+
Thr
CGT
[ENA]
¢þ
>WENV183623683
OOGA01035665
[OOGA] marine metagenome; sea ice
581
654
+
Thr
CGT
[ENA]
¢þ
>WENV183625348
OOGF01015393
[OOGF] marine metagenome; seawater
222
295
+
Thr
CGT
[ENA]
¢þ
>WENV183626106
OOGH01013908
[OOGH] marine metagenome; seawater
301
374
+
Thr
CGT
[ENA]
¢þ
>WENV183628318
OOGN01009201
[OOGN] marine metagenome; sea ice
257
330
+
Thr
CGT
[ENA]
¢þ
>WENV183628878
OOGO01049244
[OOGO] marine metagenome; sea ice
196
123
-
Thr
CGT
[ENA]
¢þ
>WENV183629152
OOGP01005701
[OOGP] marine metagenome; seawater
517
444
-
Thr
CGT
[ENA]
¢þ
>WENV170567892
FLMP01008812
[FLMP] seawater metagenome; seawater
1462
1389
-
Thr
CGT
[ENA]
¢þ
>WENV170627053
FUWD013230979
[FUWD] metagenome; unknown
10162
10235
+
Thr
CGT
[ENA]
¢þ
>WENV170627153
FUWD013231702
[FUWD] metagenome; unknown
1772
1699
-
Thr
CGT
[ENA]
¢þ
>WENV170627551
FUWD013233389
[FUWD] metagenome; unknown
10162
10235
+
Thr
CGT
[ENA]
¢þ
>WENV170632082
FUWD013378096
[FUWD] metagenome; unknown
1772
1699
-
Thr
CGT
[ENA]
¢þ
>WENV170950913
MEHZ011526806
[MEHZ] marine metagenome; marine surface water
908
981
+
Thr
CGT
[ENA]
¢þ
>SRA1023156
SRR035084.22579
454 Sequencing (SRP001805)
49
122
+
Thr
CGT
[SRA]
>SRA1023790
SRR035084.176086
454 Sequencing (SRP001805)
240
167
-
Thr
CGT
[SRA]
>SRA1024400
SRR035084.316539
454 Sequencing (SRP001805)
422
349
-
Thr
CGT
[SRA]
>SRA1024924
SRR035084.435642
454 Sequencing (SRP001805)
167
94
-
Thr
CGT
[SRA]
>SRA1025061
SRR035084.473999
454 Sequencing (SRP001805)
215
142
-
Thr
CGT
[SRA]
>SRA1045286
SRR035093.57745
454 Sequencing (SRP001814)
269
196
-
Thr
CGT
[SRA]
>SRA1045401
SRR035093.85803
454 Sequencing (SRP001814)
160
87
-
Thr
CGT
[SRA]
>SRA1045646
SRR035093.140756
454 Sequencing (SRP001814)
258
331
+
Thr
CGT
[SRA]
>SRA1046255
SRR035093.262393
454 Sequencing (SRP001814)
297
370
+
Thr
CGT
[SRA]
>SRA1046516
SRR035093.322521
454 Sequencing (SRP001814)
330
403
+
Thr
CGT
[SRA]
>SRA1046608
SRR035093.343201
454 Sequencing (SRP001814)
249
176
-
Thr
CGT
[SRA]
>SRA1047082
SRR035093.452089
454 Sequencing (SRP001814)
369
442
+
Thr
CGT
[SRA]
>SRA1053354
SRR035098.389978
454 Sequencing (SRP001819)
205
132
-
Thr
CGT
[SRA]
>W121063449
AJKR01000001
Actinomycetota
Candidatus Aquiluna sp. IMCC13023 [AJKR]
94408
94481
+
Thr
CGT
[ENA]
¡û
>W1610625715
LIBA01000007
Actinomycetota
Microbacteriaceae bacterium BACL28 MAG-120531-bin53 [LIBA]
9073
9000
-
Thr
CGT
[ENA]
¡û
>W1710756842
LIBA01000007
Actinomycetota
Microbacteriaceae bacterium BACL28 MAG-120531-bin53 [LIBA]
9073
9000
-
Thr
CGT
[ENA]
¡û
Identical group No.474427 (82 seq.)
>WENV180114092
OAPR01148672
[OAPR] marine metagenome; seawater
356
281
-
Thr
CGT
[ENA]
¢þ
>WENV181321994
OFKO01008388
[OFKO] marine metagenome; seawater
35
110
+
Thr
CGT
[ENA]
¢þ
>WENV181393239
OFRX01083034
[OFRX] seawater metagenome; seawater
298
373
+
Thr
CGT
[ENA]
¢þ
>WENV182540385
OJAJ01000072
[OJAJ] seawater metagenome; Sea water
1691
1766
+
Thr
CGT
[ENA]
¢þ
>WENV182540805
OJAQ01000002
[OJAQ] seawater metagenome; Sea water
3228
3303
+
Thr
CGT
[ENA]
¢þ
>WENV182542739
OJAZ01001391
[OJAZ] seawater metagenome; Sea water
5491
5416
-
Thr
CGT
[ENA]
¢þ
>WENV182544240
OJBF01000058
[OJBF] seawater metagenome; Sea water
8071
7996
-
Thr
CGT
[ENA]
¢þ
>WENV182544432
OJBG01001105
[OJBG] seawater metagenome; Sea water
676
751
+
Thr
CGT
[ENA]
¢þ
>WENV182544977
OJBL01001412
[OJBL] seawater metagenome; Sea water
1110
1185
+
Thr
CGT
[ENA]
¢þ
>WENV182545763
OJBN01022568
[OJBN] seawater metagenome; Sea water
542
467
-
Thr
CGT
[ENA]
¢þ
>WENV182548472
OJBW01000416
[OJBW] seawater metagenome; Sea water
558
633
+
Thr
CGT
[ENA]
¢þ
>WENV182550118
OJBZ01003862
[OJBZ] seawater metagenome; Sea water
2776
2851
+
Thr
CGT
[ENA]
¢þ
>WENV182552640
OJCN01000439
[OJCN] seawater metagenome; Sea water
363
438
+
Thr
CGT
[ENA]
¢þ
>WENV182553187
OJCR01000340
[OJCR] seawater metagenome; Sea water
13258
13333
+
Thr
CGT
[ENA]
¢þ
>WENV182554052
OJCT01000089
[OJCT] seawater metagenome; Sea water
4840
4765
-
Thr
CGT
[ENA]
¢þ
>WENV182556513
OJDG01013715
[OJDG] seawater metagenome; Sea water
646
721
+
Thr
CGT
[ENA]
¢þ
>WENV182557167
OJDI01001767
[OJDI] seawater metagenome; Sea water
3977
3902
-
Thr
CGT
[ENA]
¢þ
>WENV182558528
OJDM01011075
[OJDM] seawater metagenome; Sea water
793
718
-
Thr
CGT
[ENA]
¢þ
>WENV182561573
OJDX01000006
[OJDX] seawater metagenome; Sea water
35482
35407
-
Thr
CGT
[ENA]
¢þ
>WENV182561910
OJDY01000006
[OJDY] seawater metagenome; Sea water
21612
21687
+
Thr
CGT
[ENA]
¢þ
>WENV182562640
OJEA01000003
[OJEA] seawater metagenome; Sea water
48968
49043
+
Thr
CGT
[ENA]
¢þ
>WENV182563035
OJEB01000006
[OJEB] seawater metagenome; Sea water
43816
43741
-
Thr
CGT
[ENA]
¢þ
>WENV182564013
OJEE01000001
[OJEE] seawater metagenome; Sea water
45749
45674
-
Thr
CGT
[ENA]
¢þ
>WENV182569227
OJEY01003037
[OJEY] seawater metagenome; Sea water
78
3
-
Thr
CGT
[ENA]
¢þ
>WENV182569703
OJFB01000050
[OJFB] seawater metagenome; Sea water
4822
4897
+
Thr
CGT
[ENA]
¢þ
>WENV182571183
OJFG01001342
[OJFG] seawater metagenome; Sea water
3285
3210
-
Thr
CGT
[ENA]
¢þ
>WENV182573740
OJFP01021078
[OJFP] seawater metagenome; Sea water
789
714
-
Thr
CGT
[ENA]
¢þ
>WENV182574522
OJFS01000004
[OJFS] seawater metagenome; Sea water
45524
45449
-
Thr
CGT
[ENA]
¢þ
>WENV182576691
OJFY01001635
[OJFY] seawater metagenome; Sea water
708
633
-
Thr
CGT
[ENA]
¢þ
>WENV182577925
OJGM01000031
[OJGM] seawater metagenome; Sea water
19323
19398
+
Thr
CGT
[ENA]
¢þ
>WENV182580617
OJGW01004956
[OJGW] seawater metagenome; Sea water
1915
1990
+
Thr
CGT
[ENA]
¢þ
>WENV182582087
OJHA01000006
[OJHA] seawater metagenome; Sea water
22853
22928
+
Thr
CGT
[ENA]
¢þ
>WENV182582407
OJHB01000049
[OJHB] seawater metagenome; Sea water
8768
8693
-
Thr
CGT
[ENA]
¢þ
>WENV182583184
OJHD01000898
[OJHD] seawater metagenome; Sea water
3598
3673
+
Thr
CGT
[ENA]
¢þ
>WENV182584684
OJHG01005276
[OJHG] seawater metagenome; Sea water
427
352
-
Thr
CGT
[ENA]
¢þ
>WENV182586732
OJHK01003934
[OJHK] seawater metagenome; Sea water
891
966
+
Thr
CGT
[ENA]
¢þ
>WENV182587537
OJHN01000009
[OJHN] seawater metagenome; Sea water
4181
4256
+
Thr
CGT
[ENA]
¢þ
>WENV182592318
OJIR01000009
[OJIR] seawater metagenome; Sea water
45835
45760
-
Thr
CGT
[ENA]
¢þ
>WENV183054499
OLGU01000003
[OLGU] seawater metagenome; Sea water
128156
128231
+
Thr
CGT
[ENA]
¢þ
>WENV183055033
OLGW01001376
[OLGW] seawater metagenome; Sea water
759
684
-
Thr
CGT
[ENA]
¢þ
>WENV183059082
OLHS01003235
[OLHS] seawater metagenome; Sea water
133
58
-
Thr
CGT
[ENA]
¢þ
>WENV183059187
OLHU01000001
[OLHU] seawater metagenome; Sea water
128358
128433
+
Thr
CGT
[ENA]
¢þ
>WENV183060190
OLHX01000047
[OLHX] seawater metagenome; Sea water
9417
9342
-
Thr
CGT
[ENA]
¢þ
>WENV183061043
OLHY01032573
[OLHY] seawater metagenome; Sea water
308
383
+
Thr
CGT
[ENA]
¢þ
>WENV183629610
OOGP01086549
[OOGP] marine metagenome; seawater
298
373
+
Thr
CGT
[ENA]
¢þ
>WENV170568196
FLMP01021615
[FLMP] seawater metagenome; seawater
1543
1618
+
Thr
CGT
[ENA]
¢þ
>WENV170600120
FUWD010108602
[FUWD] metagenome; unknown
663
590
-
Thr
CGT
[ENA]
¢þ
>WENV170616595
FUWD012893243
[FUWD] metagenome; unknown
160
85
-
Thr
CGT
[ENA]
¢þ
>WENV170619688
FUWD013019052
[FUWD] metagenome; unknown
214
139
-
Thr
CGT
[ENA]
¢þ
>WENV170620384
FUWD013030779
[FUWD] metagenome; unknown
2597
2670
+
Thr
CGT
[ENA]
¢þ
>WENV170624323
FUWD013179764
[FUWD] metagenome; unknown
1233
1308
+
Thr
CGT
[ENA]
¢þ
>WENV170624324
FUWD013179765
[FUWD] metagenome; unknown
308
383
+
Thr
CGT
[ENA]
¢þ
>WENV170624747
FUWD013186080
[FUWD] metagenome; unknown
613
538
-
Thr
CGT
[ENA]
¢þ
>WENV170626578
FUWD013225830
[FUWD] metagenome; unknown
700
775
+
Thr
CGT
[ENA]
¢þ
>WENV170627203
FUWD013232002
[FUWD] metagenome; unknown
389
464
+
Thr
CGT
[ENA]
¢þ
>WENV170627807
FUWD013237473
[FUWD] metagenome; unknown
214
139
-
Thr
CGT
[ENA]
¢þ
>WENV170629408
FUWD013269716
[FUWD] metagenome; unknown
45236
45163
-
Thr
CGT
[ENA]
¢þ
>WENV170632610
FUWD013385052
[FUWD] metagenome; unknown
308
383
+
Thr
CGT
[ENA]
¢þ
>WENV170632611
FUWD013385053
[FUWD] metagenome; unknown
389
464
+
Thr
CGT
[ENA]
¢þ
>WENV170633026
FUWD013390224
[FUWD] metagenome; unknown
613
538
-
Thr
CGT
[ENA]
¢þ
>WENV170952961
MEHZ011622507
[MEHZ] marine metagenome; marine surface water
13314
13389
+
Thr
CGT
[ENA]
¢þ
>SRA1018078
SRR035082.236652
454 Sequencing (SRP001803)
186
111
-
Thr
CGT
[SRA]
>SRA1023899
SRR035084.203679
454 Sequencing (SRP001805)
346
271
-
Thr
CGT
[SRA]
>SRA1024261
SRR035084.285256
454 Sequencing (SRP001805)
356
281
-
Thr
CGT
[SRA]
>SRA1024734
SRR035084.389800
454 Sequencing (SRP001805)
347
272
-
Thr
CGT
[SRA]
>SRA1024776
SRR035084.398663
454 Sequencing (SRP001805)
356
281
-
Thr
CGT
[SRA]
>SRA1024888
SRR035084.429326
454 Sequencing (SRP001805)
129
54
-
Thr
CGT
[SRA]
>SRA1028664
SRR035086.392260
454 Sequencing (SRP001807)
18
93
+
Thr
CGT
[SRA]
>SRA1032088
SRR035087.550399
454 Sequencing (SRP001808)
367
442
+
Thr
CGT
[SRA]
>SRA1045619
SRR035093.134641
454 Sequencing (SRP001814)
58
133
+
Thr
CGT
[SRA]
>SRA1046086
SRR035093.233281
454 Sequencing (SRP001814)
357
430
+
Thr
CGT
[SRA]
>SRA1046443
SRR035093.308006
454 Sequencing (SRP001814)
216
291
+
Thr
CGT
[SRA]
>SRA1046612
SRR035093.343929
454 Sequencing (SRP001814)
319
394
+
Thr
CGT
[SRA]
>SRA1046720
SRR035093.370225
454 Sequencing (SRP001814)
434
506
+
Thr
CGT
[SRA]
>SRA1047471
SRR035093.548495
454 Sequencing (SRP001814)
194
119
-
Thr
CGT
[SRA]
>SRA1047513
SRR035093.561931
454 Sequencing (SRP001814)
153
228
+
Thr
CGT
[SRA]
>SRA1050990
SRR035096.66993
454 Sequencing (SRP001817)
242
167
-
Thr
CGT
[SRA]
>SRA1051669
SRR035098.55362
454 Sequencing (SRP001819)
35
110
+
Thr
CGT
[SRA]
>SRA1051896
SRR035098.98595
454 Sequencing (SRP001819)
35
110
+
Thr
CGT
[SRA]
>SRA1052476
SRR035098.211159
454 Sequencing (SRP001819)
160
85
-
Thr
CGT
[SRA]
>SRA1052948
SRR035098.306072
454 Sequencing (SRP001819)
226
301
+
Thr
CGT
[SRA]
>SRA1052984
SRR035098.312837
454 Sequencing (SRP001819)
35
110
+
Thr
CGT
[SRA]
Identical group No.546025 (4 seq.)
>WENV183056763
OLHJ01012482
[OLHJ] seawater metagenome; Sea water
1287
1362
+
Thr
CGT
[ENA]
¢þ
>WENV170611775
FUWD012391937
[FUWD] metagenome; unknown
144
69
-
Thr
CGT
[ENA]
¢þ
>SRA1023120
SRR035084.7848
454 Sequencing (SRP001805)
428
353
-
Thr
CGT
[SRA]
>SRA1051867
SRR035098.90194
454 Sequencing (SRP001819)
82
157
+
Thr
CGT
[SRA]
Identical group No.548318 (3 seq.)
>WENV170611779
FUWD012394005
[FUWD] metagenome; unknown
135
209
+
Thr
CGT
[ENA]
¢þ
>SRA1023345
SRR035084.75770
454 Sequencing (SRP001805)
135
209
+
Thr
CGT
[SRA]
>SRA1024569
SRR035084.350778
454 Sequencing (SRP001805)
135
209
+
Thr
CGT
[SRA]
Identical group No.573372 (1 seq.)
>SRA1023386
SRR035084.84548
454 Sequencing (SRP001805)
344
419
+
Thr
CGT
[SRA]
Identical group No.573439 (1 seq.)
>SRA1025096
SRR035084.483434
454 Sequencing (SRP001805)
151
226
+
Thr
CGT
[SRA]
Identical group No.672737 (13 seq.)
>WENV180101592
OAOV01021003
[OAOV] marine metagenome; ENVO:00002010
354
280
-
Thr
CGT
[ENA]
¢þ
>WENV183620359
OOFR01042022
[OOFR] marine metagenome; seawater
175
249
+
Thr
CGT
[ENA]
¢þ
>WENV183624035
OOGB01014639
[OOGB] marine metagenome; sea ice
419
346
-
Thr
CGT
[ENA]
¢þ
>WENV183629974
OOGR01001861
[OOGR] marine metagenome; seawater
970
896
-
Thr
CGT
[ENA]
¢þ
>WENV170571185
FLOH01000088
[FLOH] marine metagenome; water
72328
72402
+
Thr
CGT
[ENA]
¢þ
>WENV170572273
FLOH01000685
[FLOH] marine metagenome; water
14732
14806
+
Thr
CGT
[ENA]
¢þ
>WENV170572274
FLOH01000685
[FLOH] marine metagenome; water
44270
44344
+
Thr
CGT
[ENA]
¢þ
>WENV170626807
FUWD013229654
[FUWD] metagenome; unknown
15450
15524
+
Thr
CGT
[ENA]
¢þ
>WENV170627303
FUWD013232535
[FUWD] metagenome; unknown
4821
4895
+
Thr
CGT
[ENA]
¢þ
>WENV170949542
MEHZ011429950
[MEHZ] marine metagenome; marine surface water
264
190
-
Thr
CGT
[ENA]
¢þ
>WENV170950002
MEHZ011470152
[MEHZ] marine metagenome; marine surface water
3509
3435
-
Thr
CGT
[ENA]
¢þ
>SRA1025048
SRR035084.468158
454 Sequencing (SRP001805)
71
145
+
Thr
CGT
[SRA]
>SRA1046471
SRR035093.315824
454 Sequencing (SRP001814)
177
251
+
Thr
CGT
[SRA]
Identical group No.812665 (1 seq.)
>SRA1024769
SRR035084.396993
454 Sequencing (SRP001805)
214
285
+
Thr
CGT
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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