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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001808)
Anticodon = CAT
HIT:
108 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.32932 (1 seq.)
>SRA1030702
SRR035087.316788
454 Sequencing (SRP001808)
301
211
-
Met
CAT
[SRA]
Identical group No.49610 (1 seq.)
>SRA1031308
SRR035087.409823
454 Sequencing (SRP001808)
110
21
-
Met
CAT
[SRA]
Identical group No.157566 (1 seq.)
>SRA1032122
SRR035087.557233
454 Sequencing (SRP001808)
371
289
-
Met
CAT
[SRA]
Identical group No.234305 (1 seq.)
>SRA1030595
SRR035087.302364
454 Sequencing (SRP001808)
522
443
-
Met
CAT
[SRA]
Identical group No.234306 (1 seq.)
>SRA1031097
SRR035087.372850
454 Sequencing (SRP001808)
56
135
+
Met
CAT
[SRA]
Identical group No.235660 (1 seq.)
>SRA1031084
SRR035087.370310
454 Sequencing (SRP001808)
331
256
-
Met
CAT
[SRA]
Identical group No.235676 (1 seq.)
>SRA1031302
SRR035087.409490
454 Sequencing (SRP001808)
185
108
-
Met
CAT
[SRA]
Identical group No.244425 (2 seq.)
>SRA1028846
SRR035087.19999
454 Sequencing (SRP001808)
83
6
-
Met
CAT
[SRA]
>SRA1029015
SRR035087.58721
454 Sequencing (SRP001808)
83
6
-
Met
CAT
[SRA]
Identical group No.244445 (1 seq.)
>SRA1029213
SRR035087.92977
454 Sequencing (SRP001808)
230
155
-
Met
CAT
[SRA]
Identical group No.244454 (1 seq.)
>SRA1029460
SRR035087.130618
454 Sequencing (SRP001808)
111
34
-
Met
CAT
[SRA]
Identical group No.244456 (1 seq.)
>SRA1029506
SRR035087.138720
454 Sequencing (SRP001808)
63
137
+
Met
CAT
[SRA]
Identical group No.244459 (1 seq.)
>SRA1029530
SRR035087.142266
454 Sequencing (SRP001808)
253
329
+
Met
CAT
[SRA]
Identical group No.244465 (1 seq.)
>SRA1029663
SRR035087.159335
454 Sequencing (SRP001808)
336
261
-
Met
CAT
[SRA]
Identical group No.244487 (1 seq.)
>SRA1030366
SRR035087.268546
454 Sequencing (SRP001808)
133
55
-
Met
CAT
[SRA]
Identical group No.244511 (1 seq.)
>SRA1030885
SRR035087.342948
454 Sequencing (SRP001808)
359
284
-
Met
CAT
[SRA]
Identical group No.244519 (1 seq.)
>SRA1031309
SRR035087.410144
454 Sequencing (SRP001808)
118
43
-
Met
CAT
[SRA]
Identical group No.244553 (1 seq.)
>SRA1032033
SRR035087.538031
454 Sequencing (SRP001808)
338
415
+
Met
CAT
[SRA]
Identical group No.244561 (1 seq.)
>SRA1032417
SRR035087.627428
454 Sequencing (SRP001808)
153
76
-
Met
CAT
[SRA]
Identical group No.300277 (1 seq.)
>SRA1028788
SRR035087.7211
454 Sequencing (SRP001808)
49
122
+
Met
CAT
[SRA]
Identical group No.300302 (1 seq.)
>SRA1028995
SRR035087.55114
454 Sequencing (SRP001808)
272
198
-
Met
CAT
[SRA]
Identical group No.300330 (1 seq.)
>SRA1029280
SRR035087.102255
454 Sequencing (SRP001808)
101
26
-
Met
CAT
[SRA]
Identical group No.300343 (1 seq.)
>SRA1029376
SRR035087.118545
454 Sequencing (SRP001808)
52
128
+
Met
CAT
[SRA]
Identical group No.300352 (1 seq.)
>SRA1029480
SRR035087.134677
454 Sequencing (SRP001808)
361
285
-
Met
CAT
[SRA]
Identical group No.300361 (1 seq.)
>SRA1029542
SRR035087.143538
454 Sequencing (SRP001808)
191
115
-
Met
CAT
[SRA]
Identical group No.300374 (1 seq.)
>SRA1029613
SRR035087.151536
454 Sequencing (SRP001808)
452
379
-
Met
CAT
[SRA]
Identical group No.300380 (1 seq.)
>SRA1029634
SRR035087.154175
454 Sequencing (SRP001808)
228
304
+
Met
CAT
[SRA]
Identical group No.300382 (1 seq.)
>SRA1029653
SRR035087.157872
454 Sequencing (SRP001808)
387
460
+
Met
CAT
[SRA]
Identical group No.300417 (1 seq.)
>SRA1029863
SRR035087.193739
454 Sequencing (SRP001808)
222
147
-
Met
CAT
[SRA]
Identical group No.300442 (1 seq.)
>SRA1030029
SRR035087.218418
454 Sequencing (SRP001808)
158
84
-
Met
CAT
[SRA]
Identical group No.300461 (1 seq.)
>SRA1030143
SRR035087.233046
454 Sequencing (SRP001808)
28
104
+
Met
CAT
[SRA]
Identical group No.300506 (1 seq.)
>SRA1030384
SRR035087.272600
454 Sequencing (SRP001808)
415
490
+
Met
CAT
[SRA]
Identical group No.300510 (1 seq.)
>SRA1030390
SRR035087.273200
454 Sequencing (SRP001808)
333
409
+
Met
CAT
[SRA]
Identical group No.300553 (1 seq.)
>SRA1030672
SRR035087.312116
454 Sequencing (SRP001808)
265
341
+
Met
CAT
[SRA]
Identical group No.300578 (1 seq.)
>SRA1030837
SRR035087.337051
454 Sequencing (SRP001808)
92
17
-
Met
CAT
[SRA]
Identical group No.300582 (1 seq.)
>SRA1030882
SRR035087.342385
454 Sequencing (SRP001808)
314
388
+
Met
CAT
[SRA]
Identical group No.300584 (2 seq.)
>SRA1030901
SRR035087.344157
454 Sequencing (SRP001808)
308
232
-
Met
CAT
[SRA]
>SRA1031603
SRR035087.458889
454 Sequencing (SRP001808)
308
232
-
Met
CAT
[SRA]
Identical group No.300596 (1 seq.)
>SRA1030962
SRR035087.355085
454 Sequencing (SRP001808)
363
439
+
Met
CAT
[SRA]
Identical group No.300608 (1 seq.)
>SRA1031037
SRR035087.363016
454 Sequencing (SRP001808)
310
383
+
Met
CAT
[SRA]
Identical group No.300620 (1 seq.)
>SRA1031123
SRR035087.377064
454 Sequencing (SRP001808)
282
357
+
Met
CAT
[SRA]
Identical group No.300621 (1 seq.)
>SRA1031124
SRR035087.377314
454 Sequencing (SRP001808)
209
133
-
Met
CAT
[SRA]
Identical group No.300624 (1 seq.)
>SRA1031132
SRR035087.378468
454 Sequencing (SRP001808)
69
144
+
Met
CAT
[SRA]
Identical group No.300644 (1 seq.)
>SRA1031230
SRR035087.395801
454 Sequencing (SRP001808)
407
483
+
Met
CAT
[SRA]
Identical group No.300645 (1 seq.)
>SRA1031235
SRR035087.396574
454 Sequencing (SRP001808)
296
220
-
Met
CAT
[SRA]
Identical group No.300651 (1 seq.)
>SRA1031276
SRR035087.405699
454 Sequencing (SRP001808)
291
218
-
Met
CAT
[SRA]
Identical group No.300669 (1 seq.)
>SRA1031372
SRR035087.420671
454 Sequencing (SRP001808)
93
17
-
Met
CAT
[SRA]
Identical group No.300701 (1 seq.)
>SRA1031564
SRR035087.450699
454 Sequencing (SRP001808)
251
176
-
Met
CAT
[SRA]
Identical group No.300702 (1 seq.)
>SRA1031566
SRR035087.451035
454 Sequencing (SRP001808)
327
251
-
Met
CAT
[SRA]
Identical group No.300716 (1 seq.)
>SRA1031647
SRR035087.464112
454 Sequencing (SRP001808)
233
309
+
Met
CAT
[SRA]
Identical group No.300733 (1 seq.)
>SRA1031750
SRR035087.481691
454 Sequencing (SRP001808)
365
290
-
Met
CAT
[SRA]
Identical group No.300758 (1 seq.)
>SRA1031981
SRR035087.524497
454 Sequencing (SRP001808)
202
277
+
Met
CAT
[SRA]
Identical group No.300763 (1 seq.)
>SRA1032034
SRR035087.538498
454 Sequencing (SRP001808)
73
-1
-
Met
CAT
[SRA]
Identical group No.300781 (1 seq.)
>SRA1032140
SRR035087.560794
454 Sequencing (SRP001808)
219
292
+
Met
CAT
[SRA]
Identical group No.300797 (1 seq.)
>SRA1032232
SRR035087.583397
454 Sequencing (SRP001808)
85
9
-
Met
CAT
[SRA]
Identical group No.300810 (1 seq.)
>SRA1032361
SRR035087.611982
454 Sequencing (SRP001808)
39
115
+
Met
CAT
[SRA]
Identical group No.300811 (1 seq.)
>SRA1032366
SRR035087.613062
454 Sequencing (SRP001808)
206
130
-
Met
CAT
[SRA]
Identical group No.300998 (1 seq.)
>SRA1029000
SRR035087.57288
454 Sequencing (SRP001808)
321
248
-
Met
CAT
[SRA]
Identical group No.301003 (1 seq.)
>SRA1031028
SRR035087.362087
454 Sequencing (SRP001808)
117
193
+
Met
CAT
[SRA]
Identical group No.484037 (1 seq.)
>SRA1028782
SRR035087.2884
454 Sequencing (SRP001808)
28
100
+
Met
CAT
[SRA]
Identical group No.484038 (1 seq.)
>SRA1028785
SRR035087.5581
454 Sequencing (SRP001808)
326
398
+
Met
CAT
[SRA]
Identical group No.484044 (2 seq.)
>SRA1028853
SRR035087.22692
454 Sequencing (SRP001808)
26
102
+
Met
CAT
[SRA]
>SRA1031900
SRR035087.508623
454 Sequencing (SRP001808)
26
102
+
Met
CAT
[SRA]
Identical group No.484065 (1 seq.)
>SRA1028943
SRR035087.42512
454 Sequencing (SRP001808)
299
374
+
Met
CAT
[SRA]
Identical group No.484122 (1 seq.)
>SRA1029293
SRR035087.104104
454 Sequencing (SRP001808)
502
428
-
Met
CAT
[SRA]
Identical group No.484125 (1 seq.)
>SRA1029308
SRR035087.106995
454 Sequencing (SRP001808)
431
356
-
Met
CAT
[SRA]
Identical group No.484127 (1 seq.)
>SRA1029327
SRR035087.109434
454 Sequencing (SRP001808)
183
257
+
Met
CAT
[SRA]
Identical group No.484166 (1 seq.)
>SRA1029553
SRR035087.144865
454 Sequencing (SRP001808)
55
130
+
Met
CAT
[SRA]
Identical group No.484178 (1 seq.)
>SRA1029636
SRR035087.154337
454 Sequencing (SRP001808)
157
82
-
Met
CAT
[SRA]
Identical group No.484228 (1 seq.)
>SRA1029938
SRR035087.204932
454 Sequencing (SRP001808)
78
153
+
Met
CAT
[SRA]
Identical group No.484234 (1 seq.)
>SRA1029977
SRR035087.210649
454 Sequencing (SRP001808)
127
54
-
Met
CAT
[SRA]
Identical group No.484240 (1 seq.)
>SRA1030028
SRR035087.218418
454 Sequencing (SRP001808)
255
181
-
Met
CAT
[SRA]
Identical group No.484270 (1 seq.)
>SRA1030228
SRR035087.245929
454 Sequencing (SRP001808)
292
216
-
Met
CAT
[SRA]
Identical group No.484276 (1 seq.)
>SRA1030262
SRR035087.251447
454 Sequencing (SRP001808)
98
26
-
Met
CAT
[SRA]
Identical group No.484312 (1 seq.)
>SRA1030524
SRR035087.290346
454 Sequencing (SRP001808)
242
170
-
Met
CAT
[SRA]
Identical group No.484335 (1 seq.)
>SRA1030659
SRR035087.310718
454 Sequencing (SRP001808)
347
274
-
Met
CAT
[SRA]
Identical group No.484367 (1 seq.)
>SRA1030870
SRR035087.341776
454 Sequencing (SRP001808)
433
360
-
Met
CAT
[SRA]
Identical group No.484415 (1 seq.)
>SRA1031234
SRR035087.396539
454 Sequencing (SRP001808)
297
372
+
Met
CAT
[SRA]
Identical group No.484420 (1 seq.)
>SRA1031288
SRR035087.406621
454 Sequencing (SRP001808)
179
104
-
Met
CAT
[SRA]
Identical group No.484474 (1 seq.)
>SRA1031654
SRR035087.464895
454 Sequencing (SRP001808)
207
132
-
Met
CAT
[SRA]
Identical group No.484512 (1 seq.)
>SRA1031953
SRR035087.519471
454 Sequencing (SRP001808)
225
150
-
Met
CAT
[SRA]
Identical group No.484516 (1 seq.)
>SRA1031983
SRR035087.525603
454 Sequencing (SRP001808)
95
170
+
Met
CAT
[SRA]
Identical group No.484518 (1 seq.)
>SRA1031987
SRR035087.526267
454 Sequencing (SRP001808)
192
117
-
Met
CAT
[SRA]
Identical group No.484537 (1 seq.)
>SRA1032100
SRR035087.552285
454 Sequencing (SRP001808)
21
93
+
Met
CAT
[SRA]
Identical group No.484542 (1 seq.)
>SRA1032141
SRR035087.561843
454 Sequencing (SRP001808)
407
332
-
Met
CAT
[SRA]
Identical group No.484547 (1 seq.)
>SRA1032174
SRR035087.568282
454 Sequencing (SRP001808)
149
74
-
Met
CAT
[SRA]
Identical group No.672238 (1 seq.)
>SRA1028813
SRR035087.13824
454 Sequencing (SRP001808)
441
368
-
Met
CAT
[SRA]
Identical group No.672240 (1 seq.)
>SRA1028828
SRR035087.16070
454 Sequencing (SRP001808)
26
97
+
Met
CAT
[SRA]
Identical group No.672248 (1 seq.)
>SRA1028874
SRR035087.27653
454 Sequencing (SRP001808)
172
244
+
Met
CAT
[SRA]
Identical group No.672250 (1 seq.)
>SRA1028888
SRR035087.31411
454 Sequencing (SRP001808)
210
283
+
Met
CAT
[SRA]
Identical group No.672296 (1 seq.)
>SRA1029216
SRR035087.93383
454 Sequencing (SRP001808)
403
331
-
Met
CAT
[SRA]
Identical group No.672311 (1 seq.)
>SRA1029325
SRR035087.108821
454 Sequencing (SRP001808)
138
212
+
Met
CAT
[SRA]
Identical group No.672319 (1 seq.)
>SRA1029423
SRR035087.125207
454 Sequencing (SRP001808)
338
264
-
Met
CAT
[SRA]
Identical group No.672350 (1 seq.)
>SRA1029664
SRR035087.159513
454 Sequencing (SRP001808)
300
372
+
Met
CAT
[SRA]
Identical group No.672417 (1 seq.)
>SRA1030201
SRR035087.241330
454 Sequencing (SRP001808)
10
84
+
Met
CAT
[SRA]
Identical group No.672434 (1 seq.)
>SRA1030316
SRR035087.261793
454 Sequencing (SRP001808)
242
170
-
Met
CAT
[SRA]
Identical group No.672454 (1 seq.)
>SRA1030493
SRR035087.287299
454 Sequencing (SRP001808)
164
90
-
Met
CAT
[SRA]
Identical group No.672489 (1 seq.)
>SRA1030859
SRR035087.340583
454 Sequencing (SRP001808)
160
231
+
Met
CAT
[SRA]
Identical group No.672494 (1 seq.)
>SRA1030906
SRR035087.344355
454 Sequencing (SRP001808)
355
426
+
Met
CAT
[SRA]
Identical group No.672509 (1 seq.)
>SRA1031022
SRR035087.361221
454 Sequencing (SRP001808)
246
172
-
Met
CAT
[SRA]
Identical group No.672550 (1 seq.)
>SRA1031335
SRR035087.414481
454 Sequencing (SRP001808)
323
249
-
Met
CAT
[SRA]
Identical group No.672607 (1 seq.)
>SRA1031876
SRR035087.502646
454 Sequencing (SRP001808)
401
329
-
Met
CAT
[SRA]
Identical group No.672653 (1 seq.)
>SRA1032269
SRR035087.591969
454 Sequencing (SRP001808)
21
92
+
Met
CAT
[SRA]
Identical group No.788023 (1 seq.)
>SRA1029143
SRR035087.81196
454 Sequencing (SRP001808)
3
75
+
Met
CAT
[SRA]
Identical group No.788049 (1 seq.)
>SRA1029473
SRR035087.132609
454 Sequencing (SRP001808)
209
281
+
Met
CAT
[SRA]
Identical group No.788062 (1 seq.)
>SRA1029669
SRR035087.161045
454 Sequencing (SRP001808)
103
176
+
Met
CAT
[SRA]
Identical group No.788108 (1 seq.)
>SRA1030293
SRR035087.257079
454 Sequencing (SRP001808)
60
130
+
Met
CAT
[SRA]
Identical group No.788134 (1 seq.)
>SRA1030881
SRR035087.342385
454 Sequencing (SRP001808)
154
227
+
Met
CAT
[SRA]
Identical group No.788190 (1 seq.)
>SRA1031658
SRR035087.466426
454 Sequencing (SRP001808)
211
282
+
Met
CAT
[SRA]
Identical group No.788192 (1 seq.)
>SRA1031736
SRR035087.478777
454 Sequencing (SRP001808)
155
82
-
Met
CAT
[SRA]
Identical group No.788338 (1 seq.)
>SRA1032124
SRR035087.557704
454 Sequencing (SRP001808)
272
201
-
Met
CAT
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK