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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001808)
Anticodon = CCA
HIT:
36 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.90620 (1 seq.)
>SRA1029390
SRR035087.120522
454 Sequencing (SRP001808)
102
15
-
Trp
CCA
[SRA]
Identical group No.219635 (1 seq.)
>SRA1029805
SRR035087.184384
454 Sequencing (SRP001808)
333
416
+
Trp
CCA
[SRA]
Identical group No.235645 (1 seq.)
>SRA1029364
SRR035087.116035
454 Sequencing (SRP001808)
8
86
+
Trp
CCA
[SRA]
Identical group No.244433 (2 seq.)
>SRA1029013
SRR035087.58240
454 Sequencing (SRP001808)
150
73
-
Trp
CCA
[SRA]
>SRA1030985
SRR035087.357322
454 Sequencing (SRP001808)
324
401
+
Trp
CCA
[SRA]
Identical group No.244458 (1 seq.)
>SRA1029529
SRR035087.142265
454 Sequencing (SRP001808)
465
388
-
Trp
CCA
[SRA]
Identical group No.244501 (1 seq.)
>SRA1030750
SRR035087.325653
454 Sequencing (SRP001808)
82
159
+
Trp
CCA
[SRA]
Identical group No.300307 (1 seq.)
>SRA1029032
SRR035087.61716
454 Sequencing (SRP001808)
241
165
-
Trp
CCA
[SRA]
Identical group No.300363 (1 seq.)
>SRA1029554
SRR035087.144891
454 Sequencing (SRP001808)
58
134
+
Trp
CCA
[SRA]
Identical group No.300412 (1 seq.)
>SRA1029844
SRR035087.190720
454 Sequencing (SRP001808)
348
272
-
Trp
CCA
[SRA]
Identical group No.300498 (2 seq.)
>SRA1030342
SRR035087.265494
454 Sequencing (SRP001808)
122
46
-
Trp
CCA
[SRA]
>SRA1030944
SRR035087.352766
454 Sequencing (SRP001808)
122
46
-
Trp
CCA
[SRA]
Identical group No.300585 (1 seq.)
>SRA1030903
SRR035087.344257
454 Sequencing (SRP001808)
112
38
-
Trp
CCA
[SRA]
Identical group No.300626 (1 seq.)
>SRA1031142
SRR035087.379665
454 Sequencing (SRP001808)
130
54
-
Trp
CCA
[SRA]
Identical group No.300777 (1 seq.)
>SRA1032111
SRR035087.554029
454 Sequencing (SRP001808)
351
427
+
Trp
CCA
[SRA]
Identical group No.300779 (1 seq.)
>SRA1032132
SRR035087.559169
454 Sequencing (SRP001808)
300
224
-
Trp
CCA
[SRA]
Identical group No.484080 (1 seq.)
>SRA1029033
SRR035087.61716
454 Sequencing (SRP001808)
91
16
-
Trp
CCA
[SRA]
Identical group No.484100 (1 seq.)
>SRA1029150
SRR035087.82343
454 Sequencing (SRP001808)
408
482
+
Trp
CCA
[SRA]
Identical group No.484207 (1 seq.)
>SRA1029829
SRR035087.189186
454 Sequencing (SRP001808)
255
328
+
Trp
CCA
[SRA]
Identical group No.484394 (1 seq.)
>SRA1031057
SRR035087.365321
454 Sequencing (SRP001808)
375
301
-
Trp
CCA
[SRA]
Identical group No.484513 (1 seq.)
>SRA1031973
SRR035087.523354
454 Sequencing (SRP001808)
114
187
+
Trp
CCA
[SRA]
Identical group No.484532 (1 seq.)
>SRA1032073
SRR035087.546242
454 Sequencing (SRP001808)
178
105
-
Trp
CCA
[SRA]
Identical group No.484550 (1 seq.)
>SRA1032206
SRR035087.575399
454 Sequencing (SRP001808)
166
238
+
Trp
CCA
[SRA]
Identical group No.484789 (3 seq.)
>SRA1031313
SRR035087.410671
454 Sequencing (SRP001808)
188
113
-
Trp
CCA
[SRA]
>SRA1031872
SRR035087.502286
454 Sequencing (SRP001808)
188
113
-
Trp
CCA
[SRA]
>SRA1032376
SRR035087.616779
454 Sequencing (SRP001808)
188
113
-
Trp
CCA
[SRA]
Identical group No.672259 (1 seq.)
>SRA1028944
SRR035087.43248
454 Sequencing (SRP001808)
150
78
-
Trp
CCA
[SRA]
Identical group No.672292 (1 seq.)
>SRA1029175
SRR035087.87655
454 Sequencing (SRP001808)
411
338
-
Trp
CCA
[SRA]
Identical group No.672394 (1 seq.)
>SRA1030042
SRR035087.220421
454 Sequencing (SRP001808)
496
570
+
Trp
CCA
[SRA]
Identical group No.672471 (1 seq.)
>SRA1030660
SRR035087.310718
454 Sequencing (SRP001808)
169
95
-
Trp
CCA
[SRA]
Identical group No.672660 (1 seq.)
>SRA1032352
SRR035087.610594
454 Sequencing (SRP001808)
156
230
+
Trp
CCA
[SRA]
Identical group No.672661 (1 seq.)
>SRA1032354
SRR035087.610619
454 Sequencing (SRP001808)
367
294
-
Trp
CCA
[SRA]
Identical group No.788018 (1 seq.)
>SRA1029087
SRR035087.70716
454 Sequencing (SRP001808)
197
124
-
Trp
CCA
[SRA]
Identical group No.788051 (1 seq.)
>SRA1029494
SRR035087.136651
454 Sequencing (SRP001808)
319
246
-
Trp
CCA
[SRA]
Identical group No.788094 (1 seq.)
>SRA1030169
SRR035087.237578
454 Sequencing (SRP001808)
294
223
-
Trp
CCA
[SRA]
Identical group No.788156 (1 seq.)
>SRA1031151
SRR035087.380677
454 Sequencing (SRP001808)
304
377
+
Trp
CCA
[SRA]
Identical group No.788162 (1 seq.)
>SRA1031207
SRR035087.390799
454 Sequencing (SRP001808)
184
114
-
Trp
CCA
[SRA]
Identical group No.788182 (1 seq.)
>SRA1031517
SRR035087.442587
454 Sequencing (SRP001808)
159
232
+
Trp
CCA
[SRA]
Identical group No.788229 (1 seq.)
>SRA1032247
SRR035087.586345
454 Sequencing (SRP001808)
454
383
-
Trp
CCA
[SRA]
Identical group No.788329 (1 seq.)
>SRA1030420
SRR035087.277999
454 Sequencing (SRP001808)
189
118
-
Trp
CCA
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK