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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001808)
Anticodon = TAG
HIT:
58 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.49598 (1 seq.)
>SRA1030019
SRR035087.217015
454 Sequencing (SRP001808)
128
217
+
Leu
TAG
[SRA]
Identical group No.90543 (1 seq.)
>SRA1029477
SRR035087.133976
454 Sequencing (SRP001808)
241
327
+
Leu
TAG
[SRA]
Identical group No.90552 (1 seq.)
>SRA1029830
SRR035087.189216
454 Sequencing (SRP001808)
404
491
+
Leu
TAG
[SRA]
Identical group No.90571 (1 seq.)
>SRA1030687
SRR035087.314750
454 Sequencing (SRP001808)
297
211
-
Leu
TAG
[SRA]
Identical group No.90603 (1 seq.)
>SRA1032199
SRR035087.574256
454 Sequencing (SRP001808)
301
214
-
Leu
TAG
[SRA]
Identical group No.90610 (1 seq.)
>SRA1032391
SRR035087.620148
454 Sequencing (SRP001808)
295
209
-
Leu
TAG
[SRA]
Identical group No.90622 (1 seq.)
>SRA1030037
SRR035087.220041
454 Sequencing (SRP001808)
325
238
-
Leu
TAG
[SRA]
Identical group No.118287 (1 seq.)
>SRA1028829
SRR035087.16215
454 Sequencing (SRP001808)
80
165
+
Leu
TAG
[SRA]
Identical group No.118298 (1 seq.)
>SRA1029369
SRR035087.118156
454 Sequencing (SRP001808)
189
275
+
Leu
TAG
[SRA]
Identical group No.118321 (1 seq.)
>SRA1029990
SRR035087.212497
454 Sequencing (SRP001808)
136
53
-
Leu
TAG
[SRA]
Identical group No.118326 (1 seq.)
>SRA1030153
SRR035087.234651
454 Sequencing (SRP001808)
328
242
-
Leu
TAG
[SRA]
Identical group No.118343 (1 seq.)
>SRA1030934
SRR035087.351837
454 Sequencing (SRP001808)
227
142
-
Leu
TAG
[SRA]
Identical group No.118348 (2 seq.)
>SRA1031093
SRR035087.371598
454 Sequencing (SRP001808)
105
190
+
Leu
TAG
[SRA]
>SRA1031824
SRR035087.495123
454 Sequencing (SRP001808)
346
261
-
Leu
TAG
[SRA]
Identical group No.118355 (1 seq.)
>SRA1031287
SRR035087.406612
454 Sequencing (SRP001808)
269
355
+
Leu
TAG
[SRA]
Identical group No.118363 (1 seq.)
>SRA1031531
SRR035087.445249
454 Sequencing (SRP001808)
407
321
-
Leu
TAG
[SRA]
Identical group No.118366 (1 seq.)
>SRA1031568
SRR035087.451196
454 Sequencing (SRP001808)
390
304
-
Leu
TAG
[SRA]
Identical group No.118368 (1 seq.)
>SRA1031598
SRR035087.457228
454 Sequencing (SRP001808)
311
228
-
Leu
TAG
[SRA]
Identical group No.118370 (1 seq.)
>SRA1031636
SRR035087.462849
454 Sequencing (SRP001808)
410
324
-
Leu
TAG
[SRA]
Identical group No.118377 (1 seq.)
>SRA1031899
SRR035087.508588
454 Sequencing (SRP001808)
161
77
-
Leu
TAG
[SRA]
Identical group No.118383 (1 seq.)
>SRA1032032
SRR035087.537910
454 Sequencing (SRP001808)
88
3
-
Leu
TAG
[SRA]
Identical group No.157492 (1 seq.)
>SRA1029635
SRR035087.154337
454 Sequencing (SRP001808)
258
173
-
Leu
TAG
[SRA]
Identical group No.157494 (1 seq.)
>SRA1030106
SRR035087.228435
454 Sequencing (SRP001808)
73
157
+
Leu
TAG
[SRA]
Identical group No.157503 (1 seq.)
>SRA1030519
SRR035087.290115
454 Sequencing (SRP001808)
413
498
+
Leu
TAG
[SRA]
Identical group No.157514 (1 seq.)
>SRA1030871
SRR035087.341776
454 Sequencing (SRP001808)
359
277
-
Leu
TAG
[SRA]
Identical group No.157522 (1 seq.)
>SRA1031290
SRR035087.406739
454 Sequencing (SRP001808)
5
90
+
Leu
TAG
[SRA]
Identical group No.157541 (1 seq.)
>SRA1032332
SRR035087.607751
454 Sequencing (SRP001808)
275
360
+
Leu
TAG
[SRA]
Identical group No.186064 (1 seq.)
>SRA1028977
SRR035087.50755
454 Sequencing (SRP001808)
310
226
-
Leu
TAG
[SRA]
Identical group No.186069 (1 seq.)
>SRA1029236
SRR035087.96194
454 Sequencing (SRP001808)
119
35
-
Leu
TAG
[SRA]
Identical group No.186074 (1 seq.)
>SRA1029571
SRR035087.147462
454 Sequencing (SRP001808)
125
209
+
Leu
TAG
[SRA]
Identical group No.186082 (2 seq.)
>SRA1030234
SRR035087.246849
454 Sequencing (SRP001808)
89
173
+
Leu
TAG
[SRA]
>SRA1030413
SRR035087.276957
454 Sequencing (SRP001808)
302
385
+
Leu
TAG
[SRA]
Identical group No.186087 (1 seq.)
>SRA1030427
SRR035087.278633
454 Sequencing (SRP001808)
426
510
+
Leu
TAG
[SRA]
Identical group No.186089 (1 seq.)
>SRA1030507
SRR035087.288757
454 Sequencing (SRP001808)
320
401
+
Leu
TAG
[SRA]
Identical group No.186090 (1 seq.)
>SRA1030554
SRR035087.294911
454 Sequencing (SRP001808)
356
272
-
Leu
TAG
[SRA]
Identical group No.186093 (1 seq.)
>SRA1030765
SRR035087.328691
454 Sequencing (SRP001808)
359
443
+
Leu
TAG
[SRA]
Identical group No.186097 (1 seq.)
>SRA1030843
SRR035087.337823
454 Sequencing (SRP001808)
200
283
+
Leu
TAG
[SRA]
Identical group No.186103 (1 seq.)
>SRA1031049
SRR035087.364748
454 Sequencing (SRP001808)
481
397
-
Leu
TAG
[SRA]
Identical group No.186107 (1 seq.)
>SRA1031253
SRR035087.400861
454 Sequencing (SRP001808)
301
383
+
Leu
TAG
[SRA]
Identical group No.186108 (1 seq.)
>SRA1031321
SRR035087.412134
454 Sequencing (SRP001808)
370
286
-
Leu
TAG
[SRA]
Identical group No.186109 (1 seq.)
>SRA1031327
SRR035087.413218
454 Sequencing (SRP001808)
318
234
-
Leu
TAG
[SRA]
Identical group No.186110 (1 seq.)
>SRA1031356
SRR035087.418682
454 Sequencing (SRP001808)
186
270
+
Leu
TAG
[SRA]
Identical group No.186112 (1 seq.)
>SRA1031370
SRR035087.420447
454 Sequencing (SRP001808)
133
52
-
Leu
TAG
[SRA]
Identical group No.186118 (1 seq.)
>SRA1031918
SRR035087.512120
454 Sequencing (SRP001808)
138
222
+
Leu
TAG
[SRA]
Identical group No.186125 (1 seq.)
>SRA1032336
SRR035087.608246
454 Sequencing (SRP001808)
54
137
+
Leu
TAG
[SRA]
Identical group No.219624 (1 seq.)
>SRA1028821
SRR035087.14862
454 Sequencing (SRP001808)
454
371
-
Leu
TAG
[SRA]
Identical group No.219626 (1 seq.)
>SRA1029002
SRR035087.57522
454 Sequencing (SRP001808)
182
265
+
Leu
TAG
[SRA]
Identical group No.219630 (1 seq.)
>SRA1029521
SRR035087.141025
454 Sequencing (SRP001808)
134
53
-
Leu
TAG
[SRA]
Identical group No.219633 (1 seq.)
>SRA1029658
SRR035087.158547
454 Sequencing (SRP001808)
441
358
-
Leu
TAG
[SRA]
Identical group No.219638 (1 seq.)
>SRA1031001
SRR035087.358624
454 Sequencing (SRP001808)
472
555
+
Leu
TAG
[SRA]
Identical group No.219648 (1 seq.)
>SRA1032383
SRR035087.619326
454 Sequencing (SRP001808)
251
333
+
Leu
TAG
[SRA]
Identical group No.244500 (1 seq.)
>SRA1030727
SRR035087.321213
454 Sequencing (SRP001808)
327
404
+
Leu
TAG
[SRA]
Identical group No.244527 (1 seq.)
>SRA1031540
SRR035087.446617
454 Sequencing (SRP001808)
364
441
+
Leu
TAG
[SRA]
Identical group No.300345 (1 seq.)
>SRA1029398
SRR035087.121325
454 Sequencing (SRP001808)
272
196
-
Leu
TAG
[SRA]
Identical group No.300444 (1 seq.)
>SRA1030035
SRR035087.219187
454 Sequencing (SRP001808)
57
133
+
Leu
TAG
[SRA]
Identical group No.300485 (1 seq.)
>SRA1030294
SRR035087.257528
454 Sequencing (SRP001808)
291
215
-
Leu
TAG
[SRA]
Identical group No.300727 (1 seq.)
>SRA1031719
SRR035087.476607
454 Sequencing (SRP001808)
293
369
+
Leu
TAG
[SRA]
Identical group No.484153 (1 seq.)
>SRA1029470
SRR035087.132181
454 Sequencing (SRP001808)
230
305
+
Leu
TAG
[SRA]
Identical group No.484408 (1 seq.)
>SRA1031201
SRR035087.390713
454 Sequencing (SRP001808)
175
102
-
Leu
TAG
[SRA]
Identical group No.484790 (1 seq.)
>SRA1031642
SRR035087.463883
454 Sequencing (SRP001808)
87
162
+
Leu
TAG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK