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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acidithiobacillia
Anticodon = CGA
HIT:
7 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.13626 (1 seq.)
>C09100397
CP001219
Acidithiobacillia
Acidithiobacillus ferrooxidans ATCC 23270 [CP001219]
1033001
1032910
-
Ser
CGA
[Ensembl]
¡û
Identical group No.19395 (1 seq.)
>W131231790
AUIS01000033
Acidithiobacillia
Thermithiobacillus tepidarius DSM 3134 [AUIS]
19342
19433
+
Ser
CGA
[ENA]
¡û
Identical group No.19876 (1 seq.)
>W141738814
JNNH01000043
Acidithiobacillia
Acidithiobacillus ferrooxidans ferriphilum [JNNH]
10825
10916
+
Ser
CGA
[ENA]
¡û
Identical group No.32983 (1 seq.)
>W141262919
CCCS020000035
Acidithiobacillia
Acidithiobacillus ferrivorans [CCCS]
243074
242985
-
Ser
CGA
[ENA]
¡û
Identical group No.34635 (6 seq.)
>W1711190365
LWRZ01000217
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRZ]
9100
9189
+
Ser
CGA
[ENA]
¡û
>W1711190507
LWSB01000089
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSB]
1780
1869
+
Ser
CGA
[ENA]
¡û
>W1711190717
LWSD01000254
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSD]
641
552
-
Ser
CGA
[ENA]
¡û
>W1711293126
LZYI01000014
Acidithiobacillia
Acidithiobacillus thiooxidans [LZYI]
14885
14796
-
Ser
CGA
[ENA]
¡û
>W141206732
AZMO01000001
Acidithiobacillia
Acidithiobacillus thiooxidans A01 [AZMO]
131069
131158
+
Ser
CGA
[ENA]
¡û
>W141695561
JMEB01000106
Acidithiobacillia
Acidithiobacillus thiooxidans [JMEB]
22307
22218
-
Ser
CGA
[ENA]
¡û
Identical group No.43084 (2 seq.)
>W1710798669
LJTU01000032
Acidithiobacillia
Acidithiobacillales bacterium SG8_45 [LJTU]
6186
6097
-
Ser
CGA
[ENA]
¡û
>W1610662626
LJTU01000032
Acidithiobacillia
Acidithiobacillales bacterium SG8_45 [LJTU]
6186
6097
-
Ser
CGA
[ENA]
¡û
Identical group No.49437 (11 seq.)
>W1711190331
LWRZ01000036
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRZ]
5843
5755
-
Ser
CGA
[ENA]
¡û
>W1711190453
LWSA01000242
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSA]
12120
12208
+
Ser
CGA
[ENA]
¡û
>W1711190477
LWSB01000010
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSB]
27924
27836
-
Ser
CGA
[ENA]
¡û
>W1711190646
LWSD01000010
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSD]
11152
11240
+
Ser
CGA
[ENA]
¡û
>W1711220187
LXQG01000052
Acidithiobacillia
Acidithiobacillus caldus [LXQG]
29060
29148
+
Ser
CGA
[ENA]
¡û
>W1711293208
LZYI01000177
Acidithiobacillia
Acidithiobacillus thiooxidans [LZYI]
2668
2580
-
Ser
CGA
[ENA]
¡û
>W1711585829
MOAD01000001
Acidithiobacillia
Acidithiobacillus albertensis [MOAD]
1904378
1904290
-
Ser
CGA
[ENA]
¡û
>W141206787
AZMO01000040
Acidithiobacillia
Acidithiobacillus thiooxidans A01 [AZMO]
2556
2468
-
Ser
CGA
[ENA]
¡û
>C181130803
CP026328
Acidithiobacillia
Acidithiobacillus caldus MTH-04 [CP026328]
904099
904187
+
Ser
CGA
-
¡û
>C11100487
CP002573
Acidithiobacillia
Acidithiobacillus caldus SM-1 [CP002573]
1008391
1008479
+
Ser
CGA
[Ensembl]
¡û
>W1611004659
LXQG01000052
Acidithiobacillia
Acidithiobacillus caldus [LXQG]
29060
29148
+
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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