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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acidithiobacillia
Anticodon = CGG
HIT:
5 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.156996 (1 seq.)
>C09100396
CP001219
Acidithiobacillia
Acidithiobacillus ferrooxidans ATCC 23270 [CP001219]
1033163
1033086
-
Pro
CGG
[Ensembl]
¡û
Identical group No.180448 (47 seq.)
>W1710777657
LJBT01000086
Acidithiobacillia
Acidithiobacillus ferrooxidans [LJBT]
19146
19222
+
Pro
CGG
[ENA]
¡û
>W1711010472
LQRJ01000044
Acidithiobacillia
Acidithiobacillus ferrooxidans [LQRJ]
19079
19155
+
Pro
CGG
[ENA]
¡û
>W1711168371
LVXZ01000285
Acidithiobacillia
Acidithiobacillus ferrooxidans [LVXZ]
5026
4950
-
Pro
CGG
[ENA]
¡û
>W1711169898
LVZL01000099
Acidithiobacillia
Acidithiobacillus ferrivorans [LVZL]
54409
54485
+
Pro
CGG
[ENA]
¡û
>W1711190263
LWRY01000121
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRY]
11505
11429
-
Pro
CGG
[ENA]
¡û
>W1711190306
LWRZ01000015
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRZ]
8581
8505
-
Pro
CGG
[ENA]
¡û
>W1711190473
LWSA01000344
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSA]
8595
8519
-
Pro
CGG
[ENA]
¡û
>W1711190563
LWSB01000216
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSB]
212
288
+
Pro
CGG
[ENA]
¡û
>W1711190617
LWSC01000112
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSC]
13274
13198
-
Pro
CGG
[ENA]
¡û
>W1711190699
LWSD01000166
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSD]
8579
8503
-
Pro
CGG
[ENA]
¡û
>W1711220199
LXQG01000066
Acidithiobacillia
Acidithiobacillus caldus [LXQG]
1640
1716
+
Pro
CGG
[ENA]
¡û
>W1711292964
LZYE01000175
Acidithiobacillia
Acidithiobacillus caldus [LZYE]
4163
4087
-
Pro
CGG
[ENA]
¡û
>W1711293011
LZYF01000143
Acidithiobacillia
Acidithiobacillus caldus [LZYF]
5929
6005
+
Pro
CGG
[ENA]
¡û
>W1711293060
LZYG01000184
Acidithiobacillia
Acidithiobacillus caldus [LZYG]
4163
4087
-
Pro
CGG
[ENA]
¡û
>W1711293099
LZYH01000629
Acidithiobacillia
Acidithiobacillus caldus [LZYH]
480
404
-
Pro
CGG
[ENA]
¡û
>W1711293157
LZYI01000045
Acidithiobacillia
Acidithiobacillus thiooxidans [LZYI]
8613
8537
-
Pro
CGG
[ENA]
¡û
>W1711312183
MASQ01000139
Acidithiobacillia
Acidithiobacillus ferrivorans [MASQ]
30627
30703
+
Pro
CGG
[ENA]
¡û
>W1711585823
MOAD01000001
Acidithiobacillia
Acidithiobacillus albertensis [MOAD]
2483055
2482979
-
Pro
CGG
[ENA]
¡û
>WENV181296227
OFHJ01014745
[OFHJ] soil metagenome; Clay
624
700
+
Pro
CGG
[ENA]
¢þ
>WENV181406349
OGCG01000142
[OGCG] hot springs metagenome; Joseph's Coat, Yellowstone National Park, Washington, USA
21790
21714
-
Pro
CGG
[ENA]
¢þ
>W141206769
AZMO01000007
Acidithiobacillia
Acidithiobacillus thiooxidans A01 [AZMO]
110293
110369
+
Pro
CGG
[ENA]
¡û
>W141262933
CCCS020000037
Acidithiobacillia
Acidithiobacillus ferrivorans [CCCS]
110934
110858
-
Pro
CGG
[ENA]
¡û
>C08000421
CP001132
Acidithiobacillia
Acidithiobacillus ferrooxidans ATCC 53993 [CP001132]
2476913
2476840
-
Pro
CGG
[Ensembl]
¡û
>WENV170008339
AOMP01000013
[AOMP] mine drainage metagenome; low temperature acidic, metal-polluted mine stream
15156
15232
+
Pro
CGG
[ENA]
¢þ
>WENV170008530
AOMQ01001968
[AOMQ] mine drainage metagenome; low temperature acidic, metal-polluted mine stream
259
183
-
Pro
CGG
[ENA]
¢þ
>C181130799
CP026328
Acidithiobacillia
Acidithiobacillus caldus MTH-04 [CP026328]
583265
583341
+
Pro
CGG
-
¡û
>C191005135
AP018795
Acidithiobacillia
Acidithiobacillus ferridurans JCM 18981 [AP018795]
827928
827852
-
Pro
CGG
-
¡û
>W09134909
ACVD01000070
Acidithiobacillia
Acidithiobacillus caldus ATCC 51756 [ACVD]
35903
35979
+
Pro
CGG
[ENA]
¡û
>W141695587
JMEB01000152
Acidithiobacillia
Acidithiobacillus thiooxidans [JMEB]
5315
5239
-
Pro
CGG
[ENA]
¡û
>W141738838
JNNH01000634
Acidithiobacillia
Acidithiobacillus ferrooxidans ferriphilum [JNNH]
815
891
+
Pro
CGG
[ENA]
¡û
>C09100374
CP001219
Acidithiobacillia
Acidithiobacillus ferrooxidans ATCC 23270 [CP001219]
2575089
2575013
-
Pro
CGG
[Ensembl]
¡û
>W1910831841
MXAV01000033
Acidithiobacillia
Acidithiobacillus marinus SH [MXAV]
29126
29202
+
Pro
CGG
[ENA]
¡û
>W1810257146
PQJK01000013
Acidithiobacillia
Acidithiobacillus ferridurans IO-2C [PQJK]
40361
40285
-
Pro
CGG
[ENA]
¡û
>W1810679292
QKQP01000005
Acidithiobacillia
Acidithiobacillus ferrooxidans CCM 4253 [QKQP]
404410
404334
-
Pro
CGG
[ENA]
¡û
>C151007940
CP005986
Acidithiobacillia
Acidithiobacillus caldus ATCC 51756 [CP005986]
690012
690088
+
Pro
CGG
[Ensembl]
¡û
>C11100483
CP002573
Acidithiobacillia
Acidithiobacillus caldus SM-1 [CP002573]
660428
660504
+
Pro
CGG
[Ensembl]
¡û
>C11100718
CP002985
Acidithiobacillia
Acidithiobacillus ferrivorans SS3 [CP002985]
277354
277430
+
Pro
CGG
[Ensembl]
¡û
>W11164258
AFJD01000001
Acidithiobacillia
Acidithiobacillus ferrivorans SS3 [AFJD]
84056
83980
-
Pro
CGG
[ENA]
¡û
>W11168534
AFOH01000056
Acidithiobacillia
Acidithiobacillus thiooxidans ATCC 19377 [AFOH]
33570
33646
+
Pro
CGG
[ENA]
¡û
>W1610627923
LIEB01000080
Nitrospirota
Leptospirillum sp. YQP-1 [LIEB]
69946
70022
+
Pro
CGG
[ENA]
¡û
>W1610641843
LJBT01000086
Acidithiobacillia
Acidithiobacillus ferrooxidans [LJBT]
19146
19222
+
Pro
CGG
[ENA]
¡û
>W1610858992
LQRJ01000044
Acidithiobacillia
Acidithiobacillus ferrooxidans [LQRJ]
19079
19155
+
Pro
CGG
[ENA]
¡û
>W1610978286
LVXZ01000285
Acidithiobacillia
Acidithiobacillus ferrooxidans [LVXZ]
5026
4950
-
Pro
CGG
[ENA]
¡û
>W1611004671
LXQG01000066
Acidithiobacillia
Acidithiobacillus caldus [LXQG]
1640
1716
+
Pro
CGG
[ENA]
¡û
>W1611057384
MASQ01000139
Acidithiobacillia
Acidithiobacillus ferrivorans [MASQ]
30627
30703
+
Pro
CGG
[ENA]
¡û
>W1710743710
LGYM01000036
Acidithiobacillia
Acidithiobacillus thiooxidans [LGYM]
260627
260551
-
Pro
CGG
[ENA]
¡û
>W1710759050
LIEB01000080
Nitrospirota
Leptospirillum sp. YQP-1 [LIEB]
69946
70022
+
Pro
CGG
[ENA]
¡û
Identical group No.194472 (13 seq.)
>W1710799204
LJUK01000224
Acidithiobacillia
Acidithiobacillales bacterium SM23_46 [LJUK]
5972
5896
-
Pro
CGG
[ENA]
¡û
>W1710799776
LJVB01000114
Acidithiobacillia
Acidithiobacillales bacterium SM1_46 [LJVB]
3515
3591
+
Pro
CGG
[ENA]
¡û
>W1711403024
MFSP01000196
Unclassified
Candidatus Muproteobacteria bacterium RBG_16_60_9 [MFSP]
6492
6568
+
Pro
CGG
[ENA]
¡û
>W1711403066
MFSR01000045
Unclassified
Candidatus Muproteobacteria bacterium RBG_16_64_10 [MFSR]
4466
4542
+
Pro
CGG
[ENA]
¡û
>WENV180283216
OBIC01180024
[OBIC] beach sand metagenome; beach sand
202
126
-
Pro
CGG
[ENA]
¢þ
>WENV180295241
OBIZ01044473
[OBIZ] soil metagenome; soil
717
641
-
Pro
CGG
[ENA]
¢þ
>WENV180351420
OBLQ010055308
[OBLQ] soil metagenome; soil
961
885
-
Pro
CGG
[ENA]
¢þ
>WENV181192804
OEPS011057912
[OEPS] soil metagenome; soil
153
229
+
Pro
CGG
[ENA]
¢þ
>WENV170712828
LNFM01018523
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
3192
3268
+
Pro
CGG
[ENA]
¢þ
>C181000982
AP014936
Gammaproteobacteria
Sulfurifustis variabilis skN76 [AP014936]
1121417
1121341
-
Pro
CGG
-
¡û
>W1910714681
MFTC01000036
Unclassified
Candidatus Muproteobacteria bacterium RIFCSPLOWO2_01_FULL_60_18 [MFTC]
25993
25917
-
Pro
CGG
[ENA]
¡û
>W1610663161
LJUK01000224
Acidithiobacillia
Acidithiobacillales bacterium SM23_46 [LJUK]
5972
5896
-
Pro
CGG
[ENA]
¡û
>W1610663733
LJVB01000114
Acidithiobacillia
Acidithiobacillales bacterium SM1_46 [LJVB]
3515
3591
+
Pro
CGG
[ENA]
¡û
Identical group No.210979 (7 seq.)
>W1711190340
LWRZ01000058
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRZ]
4489
4565
+
Pro
CGG
[ENA]
¡û
>W1711190460
LWSA01000290
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSA]
8685
8609
-
Pro
CGG
[ENA]
¡û
>W1711190523
LWSB01000089
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSB]
7962
8038
+
Pro
CGG
[ENA]
¡û
>W1711190733
LWSD01000267
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSD]
5510
5586
+
Pro
CGG
[ENA]
¡û
>W1711293142
LZYI01000014
Acidithiobacillia
Acidithiobacillus thiooxidans [LZYI]
8703
8627
-
Pro
CGG
[ENA]
¡û
>W141206748
AZMO01000001
Acidithiobacillia
Acidithiobacillus thiooxidans A01 [AZMO]
137251
137327
+
Pro
CGG
[ENA]
¡û
>W141695577
JMEB01000106
Acidithiobacillia
Acidithiobacillus thiooxidans [JMEB]
15793
15717
-
Pro
CGG
[ENA]
¡û
Identical group No.222171 (7 seq.)
>W1710785508
LJHX01000112
Alphaproteobacteria
alpha proteobacterium AAP81b [LJHX]
20266
20190
-
Pro
CGG
[ENA]
¡û
>W131058825
ANFY01000006
Alphaproteobacteria
Sandarakinorhabdus sp. AAP62 [ANFY]
158083
158007
-
Pro
CGG
[ENA]
¡û
>W131216115
ATVO01000005
Alphaproteobacteria
Sandarakinorhabdus limnophila DSM 17366 [ATVO]
12752
12676
-
Pro
CGG
[ENA]
¡û
>W131231777
AUIS01000013
Acidithiobacillia
Thermithiobacillus tepidarius DSM 3134 [AUIS]
18855
18779
-
Pro
CGG
[ENA]
¡û
>W1712049889
NFUS01000002
Alphaproteobacteria
Sphingomonas sp. IBVSS1 [NFUS]
592443
592367
-
Pro
CGG
[ENA]
¡û
>WENV181385535
OFRI01114350
[OFRI] wastewater metagenome; Exp Tend VB 90WW
460
384
-
Pro
CGG
[ENA]
¢þ
>W1610649314
LJHX01000112
Alphaproteobacteria
alpha proteobacterium AAP81b [LJHX]
20266
20190
-
Pro
CGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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