tRNA genes clustered and arranged according to each identical group

Acidithiobacillia

Anticodon = CTC

HIT: 10 Group(s).

Sequence ID	Genome ID (or Accession No.)	Phylum/Class (Sample source for ENV)	Species	Start	End	Direction	AA	Anticodon	Genome/Seq. Info.	Decision
Identical group No.285306 (14 seq.)
>W1711220203	LXQG01000075	Acidithiobacillia	Acidithiobacillus caldus [LXQG]	7619	7544	-	Glu	CTC	[ENA]	○
>W1711292983	LZYE01000330	Acidithiobacillia	Acidithiobacillus caldus [LZYE]	6594	6519	-	Glu	CTC	[ENA]	○
>W1711293008	LZYF01000119	Acidithiobacillia	Acidithiobacillus caldus [LZYF]	655	580	-	Glu	CTC	[ENA]	○
>W1711293071	LZYG01000341	Acidithiobacillia	Acidithiobacillus caldus [LZYG]	6594	6519	-	Glu	CTC	[ENA]	○
>W1711293112	LZYH01000968	Acidithiobacillia	Acidithiobacillus caldus [LZYH]	456	531	+	Glu	CTC	[ENA]	○
>W131231772	AUIS01000012	Acidithiobacillia	Thermithiobacillus tepidarius DSM 3134 [AUIS]	45590	45665	+	Glu	CTC	[ENA]	○
>WENV181406496	OGCG01000341	[OGCG] hot springs metagenome; Joseph's Coat, Yellowstone National Park, Washington, USA		13363	13438	+	Glu	CTC	[ENA]	◯
>WENV183516553	OMKS01203218	[OMKS] sediment metagenome; hot spring sediment		117	42	-	Glu	CTC	[ENA]	◯
>C181130808	CP026328	Acidithiobacillia	Acidithiobacillus caldus MTH-04 [CP026328]	1490317	1490392	+	Glu	CTC	-	○
>W09134921	ACVD01000079	Acidithiobacillia	Acidithiobacillus caldus ATCC 51756 [ACVD]	31453	31528	+	Glu	CTC	[ENA]	○
>C09100379	CP001219	Acidithiobacillia	Acidithiobacillus ferrooxidans ATCC 23270 [CP001219]	2107122	2107047	-	Glu	CTC	[Ensembl]	○
>C151007948	CP005986	Acidithiobacillia	Acidithiobacillus caldus ATCC 51756 [CP005986]	1326424	1326499	+	Glu	CTC	[Ensembl]	○
>C11100492	CP002573	Acidithiobacillia	Acidithiobacillus caldus SM-1 [CP002573]	1589853	1589928	+	Glu	CTC	[Ensembl]	○
>W1611004675	LXQG01000075	Acidithiobacillia	Acidithiobacillus caldus [LXQG]	7619	7544	-	Glu	CTC	[ENA]	○
Identical group No.300789 (19 seq.)
>W1710798666	LJTU01000030	Acidithiobacillia	Acidithiobacillales bacterium SG8_45 [LJTU]	42092	42167	+	Glu	CTC	[ENA]	○
>W1710798750	LJTW01000265	Gammaproteobacteria	Thiotrichales bacterium SG8_50 [LJTW]	4904	4979	+	Glu	CTC	[ENA]	○
>W1711223621	LXTK01000103	Unclassified	Proteobacteria bacterium SPGG2 [LXTK]	1047	1122	+	Glu	CTC	[ENA]	○
>W1711351178	MDCF01000143	Gammaproteobacteria	Acidiferrobacter thiooxydans [MDCF]	43249	43174	-	Glu	CTC	[ENA]	○
>W1711403027	MFSP01000197	Unclassified	Candidatus Muproteobacteria bacterium RBG_16_60_9 [MFSP]	1918	1843	-	Glu	CTC	[ENA]	○
>WENV180250156	OBEQ010261031	[OBEQ] groundwater metagenome; groundwater		397	472	+	Glu	CTC	[ENA]	◯
>WENV180282749	OBIC01003398	[OBIC] beach sand metagenome; beach sand		336	261	-	Glu	CTC	[ENA]	◯
>WENV180309575	OBJS01008605	[OBJS] beach sand metagenome; beach sand		318	243	-	Glu	CTC	[ENA]	◯
>WENV180350711	OBLQ010007538	[OBLQ] soil metagenome; soil		2874	2799	-	Glu	CTC	[ENA]	◯
>WENV180352919	OBLQ010436800	[OBLQ] soil metagenome; soil		32	107	+	Glu	CTC	[ENA]	◯
>WENV170701565	LKGT01010855	[LKGT] marine sediment metagenome; sediment sample collected at the water-sediment interface from the South Pacific gyre, IODP		1047	1122	+	Glu	CTC	[ENA]	◯
>C181000965	AP014936	Gammaproteobacteria	Sulfurifustis variabilis skN76 [AP014936]	2214651	2214726	+	Glu	CTC	-	○
>C181004555	AP018052	Gammaproteobacteria	Thiohalobacter thiocyanaticus FOKN1 [AP018052]	2729600	2729675	+	Glu	CTC	-	○
>C181158276	CP027663	Gammaproteobacteria	Acidiferrobacter sp. SPIII_3 [CP027663]	2341042	2341117	+	Glu	CTC	-	○
>W1910714506	MFSV01000121	Unclassified	Candidatus Muproteobacteria bacterium RBG_19FT_COMBO_61_10 [MFSV]	10458	10533	+	Glu	CTC	[ENA]	○
>W1810282318	PSYR01000001	Gammaproteobacteria	Acidiferrobacter thiooxydans m-1 [PSYR]	925363	925288	-	Glu	CTC	[ENA]	○
>W1610662623	LJTU01000030	Acidithiobacillia	Acidithiobacillales bacterium SG8_45 [LJTU]	42092	42167	+	Glu	CTC	[ENA]	○
>W1610662707	LJTW01000265	Gammaproteobacteria	Thiotrichales bacterium SG8_50 [LJTW]	4904	4979	+	Glu	CTC	[ENA]	○
>W1611007992	LXTK01000103	Unclassified	Proteobacteria bacterium SPGG2 [LXTK]	1047	1122	+	Glu	CTC	[ENA]	○
Identical group No.301976 (41 seq.)
>W1710799177	LJUK01000040	Acidithiobacillia	Acidithiobacillales bacterium SM23_46 [LJUK]	10304	10379	+	Glu	CTC	[ENA]	○
>W1710799758	LJVB01000060	Acidithiobacillia	Acidithiobacillales bacterium SM1_46 [LJVB]	9865	9940	+	Glu	CTC	[ENA]	○
>W1710803939	LJYW01000001	Alphaproteobacteria	Prosthecomicrobium hirschii [LJYW]	1792593	1792518	-	Glu	CTC	[ENA]	○
>W131163161	AQZO01000005	Gammaproteobacteria	Thioalkalivibrio thiocyanodenitrificans ARhD 1 [AQZO]	2968621	2968696	+	Glu	CTC	[ENA]	○
>W1711403119	MFST01000131	Unclassified	Candidatus Muproteobacteria bacterium RBG_16_65_31 [MFST]	4069	4144	+	Glu	CTC	[ENA]	○
>W1711767973	MVBK01000058	Gammaproteobacteria	Thioalkalivibrio denitrificans [MVBK]	15956	16031	+	Glu	CTC	[ENA]	○
>W131222242	AUBC01000010	Alphaproteobacteria	Salinarimonas rosea DSM 21201 [AUBC]	230736	230811	+	Glu	CTC	[ENA]	○
>WENV180257901	OBEQ010952370	[OBEQ] groundwater metagenome; groundwater		194	119	-	Glu	CTC	[ENA]	◯
>WENV180282620	OBIC01000466	[OBIC] beach sand metagenome; beach sand		1321	1396	+	Glu	CTC	[ENA]	◯
>WENV180293667	OBIY01000475	[OBIY] beach sand metagenome; beach sand		14180	14105	-	Glu	CTC	[ENA]	◯
>WENV180295877	OBIZ01408231	[OBIZ] soil metagenome; soil		110	35	-	Glu	CTC	[ENA]	◯
>WENV180297800	OBJA01087002	[OBJA] soil metagenome; sediment, water from around vicinity		40	115	+	Glu	CTC	[ENA]	◯
>WENV180309443	OBJS01001261	[OBJS] beach sand metagenome; beach sand		1342	1417	+	Glu	CTC	[ENA]	◯
>WENV180351697	OBLQ010088035	[OBLQ] soil metagenome; soil		897	972	+	Glu	CTC	[ENA]	◯
>WENV180351938	OBLQ010130129	[OBLQ] soil metagenome; soil		674	749	+	Glu	CTC	[ENA]	◯
>WENV181311958	OFJB01026675	[OFJB] sludge metagenome; sludge		665	740	+	Glu	CTC	[ENA]	◯
>W141241705	CAHM01000225	Alphaproteobacteria	Microvirga massiliensis JC119 [CAHM]	15075	15150	+	Glu	CTC	[ENA]	○
>WENV183688808	ORMF011346942	[ORMF] groundwater metagenome; groundwater		3	76	+	Glu	CTC	[ENA]	◯
>WENV183690554	ORMF011615197	[ORMF] groundwater metagenome; groundwater		514	439	-	Glu	CTC	[ENA]	◯
>WENV170594711	FUFK011432480	[FUFK] metagenome; unknown		588	513	-	Glu	CTC	[ENA]	◯
>WENV170707237	LNAP01015831	[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with		6095	6020	-	Glu	CTC	[ENA]	◯
>WENV170707479	LNAP01022198	[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with		89	14	-	Glu	CTC	[ENA]	◯
>WENV170707672	LNAP01029085	[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with		2934	2859	-	Glu	CTC	[ENA]	◯
>WENV170707963	LNAP01041968	[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with		1977	1902	-	Glu	CTC	[ENA]	◯
>WENV170711330	LNFM01004620	[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant		7215	7290	+	Glu	CTC	[ENA]	◯
>WENV170962479	MRWF01017363	[MRWF] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell		48991	49066	+	Glu	CTC	[ENA]	◯
>WENV170963310	MRWG01000091	[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell		254117	254042	-	Glu	CTC	[ENA]	◯
>WENV170963362	MRWG01000133	[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell		123141	123066	-	Glu	CTC	[ENA]	◯
>W141821074	JQNH01000001	Alphaproteobacteria	Rhizobiales bacterium YIM 77505 [JQNH]	4146218	4146293	+	Glu	CTC	[ENA]	○
>W1910714580	MFSY01000056	Unclassified	Candidatus Muproteobacteria bacterium RIFCSPHIGHO2_01_FULL_65_16 [MFSY]	6905	6830	-	Glu	CTC	[ENA]	○
>W1910714635	MFTA01000147	Unclassified	Candidatus Muproteobacteria bacterium RIFCSPHIGHO2_02_FULL_65_16 [MFTA]	15023	14948	-	Glu	CTC	[ENA]	○
>W1910729472	MGYP01000004	Gammaproteobacteria	Gammaproteobacteria bacterium RIFCSPLOWO2_02_FULL_47_50 [MGYP]	4733	4808	+	Glu	CTC	[ENA]	○
>W1911494406	OBKE01011177	Unclassified	bacterium [OBKE]	588	513	-	Glu	CTC	[ENA]	○
>W1810330562	PUIV01000010	Alphaproteobacteria	Methylosinus sporium DSM 17706 [PUIV]	13033	12958	-	Glu	CTC	[ENA]	○
>W1510081357	CDSD01000031	Alphaproteobacteria	Microvirga massiliensis JC119 [CDSD]	15075	15150	+	Glu	CTC	[ENA]	○
>C161004957	CP006992	Alphaproteobacteria	Methylobacterium sp. AMS5 [CP006992]	816098	816173	+	Glu	CTC	[Ensembl]	○
>C161075995	CP014671	Gammaproteobacteria	Immundisolibacter cernigliae TR3.2 [CP014671]	2011936	2011861	-	Glu	CTC	[Ensembl]	○
>W1610663134	LJUK01000040	Acidithiobacillia	Acidithiobacillales bacterium SM23_46 [LJUK]	10304	10379	+	Glu	CTC	[ENA]	○
>W1610663715	LJVB01000060	Acidithiobacillia	Acidithiobacillales bacterium SM1_46 [LJVB]	9865	9940	+	Glu	CTC	[ENA]	○
>W1610667796	LJYW01000001	Alphaproteobacteria	Prosthecomicrobium hirschii [LJYW]	1792593	1792518	-	Glu	CTC	[ENA]	○
>W1710567178	FOSN01000006	Alphaproteobacteria	Methylocapsa palsarum [FOSN]	97541	97466	-	Glu	CTC	[ENA]	○
Identical group No.307029 (36 seq.)
>W1710777656	LJBT01000085	Acidithiobacillia	Acidithiobacillus ferrooxidans [LJBT]	60836	60761	-	Glu	CTC	[ENA]	○
>W1711010470	LQRJ01000039	Acidithiobacillia	Acidithiobacillus ferrooxidans [LQRJ]	36033	36108	+	Glu	CTC	[ENA]	○
>W1711168361	LVXZ01000161	Acidithiobacillia	Acidithiobacillus ferrooxidans [LVXZ]	6034	5959	-	Glu	CTC	[ENA]	○
>W1711169887	LVZL01000075	Acidithiobacillia	Acidithiobacillus ferrivorans [LVZL]	24666	24591	-	Glu	CTC	[ENA]	○
>W1711190262	LWRY01000103	Acidithiobacillia	Acidithiobacillus thiooxidans [LWRY]	13766	13691	-	Glu	CTC	[ENA]	○
>W1711190380	LWRZ01000247	Acidithiobacillia	Acidithiobacillus thiooxidans [LWRZ]	13335	13410	+	Glu	CTC	[ENA]	○
>W1711190450	LWSA01000227	Acidithiobacillia	Acidithiobacillus thiooxidans [LWSA]	24473	24548	+	Glu	CTC	[ENA]	○
>W1711190499	LWSB01000035	Acidithiobacillia	Acidithiobacillus thiooxidans [LWSB]	6775	6700	-	Glu	CTC	[ENA]	○
>W1711190611	LWSC01000086	Acidithiobacillia	Acidithiobacillus thiooxidans [LWSC]	39378	39453	+	Glu	CTC	[ENA]	○
>W1711190694	LWSD01000158	Acidithiobacillia	Acidithiobacillus thiooxidans [LWSD]	6651	6576	-	Glu	CTC	[ENA]	○
>W1711293151	LZYI01000020	Acidithiobacillia	Acidithiobacillus thiooxidans [LZYI]	17219	17144	-	Glu	CTC	[ENA]	○
>W1711312175	MASQ01000092	Acidithiobacillia	Acidithiobacillus ferrivorans [MASQ]	8562	8487	-	Glu	CTC	[ENA]	○
>W1711585825	MOAD01000001	Acidithiobacillia	Acidithiobacillus albertensis [MOAD]	2142913	2142838	-	Glu	CTC	[ENA]	○
>WENV181296314	OFHJ01024726	[OFHJ] soil metagenome; Clay		921	846	-	Glu	CTC	[ENA]	◯
>W141206767	AZMO01000006	Acidithiobacillia	Acidithiobacillus thiooxidans A01 [AZMO]	97870	97945	+	Glu	CTC	[ENA]	○
>W141262950	CCCS020000057	Acidithiobacillia	Acidithiobacillus ferrivorans [CCCS]	138157	138082	-	Glu	CTC	[ENA]	○
>C08000426	CP001132	Acidithiobacillia	Acidithiobacillus ferrooxidans ATCC 53993 [CP001132]	1992654	1992582	-	Glu	CTC	[Ensembl]	○
>WENV170008361	AOMP01000330	[AOMP] mine drainage metagenome; low temperature acidic, metal-polluted mine stream		2595	2520	-	Glu	CTC	[ENA]	◯
>WENV170008630	AOMQ01009839	[AOMQ] mine drainage metagenome; low temperature acidic, metal-polluted mine stream		1	76	+	Glu	CTC	[ENA]	◯
>C191005140	AP018795	Acidithiobacillia	Acidithiobacillus ferridurans JCM 18981 [AP018795]	441229	441154	-	Glu	CTC	-	○
>W141695590	JMEB01000181	Acidithiobacillia	Acidithiobacillus thiooxidans [JMEB]	10676	10601	-	Glu	CTC	[ENA]	○
>W141738853	JNNH01001178	Acidithiobacillia	Acidithiobacillus ferrooxidans ferriphilum [JNNH]	738	813	+	Glu	CTC	[ENA]	○
>W1910831846	MXAV01000034	Acidithiobacillia	Acidithiobacillus marinus SH [MXAV]	188289	188364	+	Glu	CTC	[ENA]	○
>W1810257125	PQJK01000003	Acidithiobacillia	Acidithiobacillus ferridurans IO-2C [PQJK]	147851	147926	+	Glu	CTC	[ENA]	○
>W1810679286	QKQP01000002	Acidithiobacillia	Acidithiobacillus ferrooxidans CCM 4253 [QKQP]	130050	129975	-	Glu	CTC	[ENA]	○
>W10127962	AEFB01000178	Acidithiobacillia	Acidithiobacillus sp. GGI-221 [AEFB]	521	596	+	Glu	CTC	[ENA]	○
>C11100743	CP002985	Acidithiobacillia	Acidithiobacillus ferrivorans SS3 [CP002985]	2412424	2412349	-	Glu	CTC	[Ensembl]	○
>W11135507	AEFB01000178	Acidithiobacillia	Acidithiobacillus sp. GGI-221 [AEFB]	521	596	+	Glu	CTC	[ENA]	○
>W11164279	AFJD01000009	Acidithiobacillia	Acidithiobacillus ferrivorans SS3 [AFJD]	58609	58684	+	Glu	CTC	[ENA]	○
>W1610627890	LIEB01000013	Nitrospirota	Leptospirillum sp. YQP-1 [LIEB]	38482	38407	-	Glu	CTC	[ENA]	○
>W1610641842	LJBT01000085	Acidithiobacillia	Acidithiobacillus ferrooxidans [LJBT]	60836	60761	-	Glu	CTC	[ENA]	○
>W1610858990	LQRJ01000039	Acidithiobacillia	Acidithiobacillus ferrooxidans [LQRJ]	36033	36108	+	Glu	CTC	[ENA]	○
>W1610978276	LVXZ01000161	Acidithiobacillia	Acidithiobacillus ferrooxidans [LVXZ]	6034	5959	-	Glu	CTC	[ENA]	○
>W1611057376	MASQ01000092	Acidithiobacillia	Acidithiobacillus ferrivorans [MASQ]	8562	8487	-	Glu	CTC	[ENA]	○
>W1710743712	LGYM01000039	Acidithiobacillia	Acidithiobacillus thiooxidans [LGYM]	113577	113652	+	Glu	CTC	[ENA]	○
>W1710759017	LIEB01000013	Nitrospirota	Leptospirillum sp. YQP-1 [LIEB]	38482	38407	-	Glu	CTC	[ENA]	○
Identical group No.403739 (1 seq.)
>C09100404	CP001219	Acidithiobacillia	Acidithiobacillus ferrooxidans ATCC 23270 [CP001219]	1028407	1028333	-	Glu	CTC	[Ensembl]	○
Identical group No.415414 (3 seq.)
>W141262926	CCCS020000035	Acidithiobacillia	Acidithiobacillus ferrivorans [CCCS]	240201	240127	-	Glu	CTC	[ENA]	○
>WENV170008383	AOMP01001306	[AOMP] mine drainage metagenome; low temperature acidic, metal-polluted mine stream		807	733	-	Glu	CTC	[ENA]	◯
>WENV170008550	AOMQ01002960	[AOMQ] mine drainage metagenome; low temperature acidic, metal-polluted mine stream		760	686	-	Glu	CTC	[ENA]	◯
Identical group No.422422 (9 seq.)
>W1711190250	LWRY01000053	Acidithiobacillia	Acidithiobacillus thiooxidans [LWRY]	14021	13947	-	Glu	CTC	[ENA]	○
>W1711190325	LWRZ01000029	Acidithiobacillia	Acidithiobacillus thiooxidans [LWRZ]	21659	21733	+	Glu	CTC	[ENA]	○
>W1711190429	LWSA01000143	Acidithiobacillia	Acidithiobacillus thiooxidans [LWSA]	6279	6205	-	Glu	CTC	[ENA]	○
>W1711190557	LWSB01000182	Acidithiobacillia	Acidithiobacillus thiooxidans [LWSB]	6311	6237	-	Glu	CTC	[ENA]	○
>W1711190605	LWSC01000048	Acidithiobacillia	Acidithiobacillus thiooxidans [LWSC]	12448	12374	-	Glu	CTC	[ENA]	○
>W1711190666	LWSD01000032	Acidithiobacillia	Acidithiobacillus thiooxidans [LWSD]	17474	17548	+	Glu	CTC	[ENA]	○
>W1711293191	LZYI01000116	Acidithiobacillia	Acidithiobacillus thiooxidans [LZYI]	6297	6223	-	Glu	CTC	[ENA]	○
>W141206814	AZMO01000080	Acidithiobacillia	Acidithiobacillus thiooxidans A01 [AZMO]	6208	6134	-	Glu	CTC	[ENA]	○
>W1710743667	LGYM01000007	Acidithiobacillia	Acidithiobacillus thiooxidans [LGYM]	24198	24272	+	Glu	CTC	[ENA]	○
Identical group No.423340 (7 seq.)
>W1711190342	LWRZ01000058	Acidithiobacillia	Acidithiobacillus thiooxidans [LWRZ]	5871	5945	+	Glu	CTC	[ENA]	○
>W1711190462	LWSA01000290	Acidithiobacillia	Acidithiobacillus thiooxidans [LWSA]	7303	7229	-	Glu	CTC	[ENA]	○
>W1711190525	LWSB01000089	Acidithiobacillia	Acidithiobacillus thiooxidans [LWSB]	9344	9418	+	Glu	CTC	[ENA]	○
>W1711190735	LWSD01000267	Acidithiobacillia	Acidithiobacillus thiooxidans [LWSD]	6892	6966	+	Glu	CTC	[ENA]	○
>W1711293144	LZYI01000014	Acidithiobacillia	Acidithiobacillus thiooxidans [LZYI]	7321	7247	-	Glu	CTC	[ENA]	○
>W141206750	AZMO01000001	Acidithiobacillia	Acidithiobacillus thiooxidans A01 [AZMO]	138633	138707	+	Glu	CTC	[ENA]	○
>W141695579	JMEB01000106	Acidithiobacillia	Acidithiobacillus thiooxidans [JMEB]	14411	14337	-	Glu	CTC	[ENA]	○
Identical group No.457040 (2 seq.)
>W10127949	AEFB01000012	Acidithiobacillia	Acidithiobacillus sp. GGI-221 [AEFB]	1320	1246	-	Glu	CTC	[ENA]	○
>W11135494	AEFB01000012	Acidithiobacillia	Acidithiobacillus sp. GGI-221 [AEFB]	1320	1246	-	Glu	CTC	[ENA]	○
Identical group No.476434 (1 seq.)
>W141738822	JNNH01000043	Acidithiobacillia	Acidithiobacillus ferrooxidans ferriphilum [JNNH]	15986	16060	+	Glu	CTC	[ENA]	○