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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acidithiobacillia
Anticodon = GCT
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.12529 (10 seq.)
>W1711220183
LXQG01000028
Acidithiobacillia
Acidithiobacillus caldus [LXQG]
12338
12430
+
Ser
GCT
[ENA]
¡û
>W1711292971
LZYE01000221
Acidithiobacillia
Acidithiobacillus caldus [LZYE]
4862
4954
+
Ser
GCT
[ENA]
¡û
>W1711293029
LZYF01000377
Acidithiobacillia
Acidithiobacillus caldus [LZYF]
6756
6848
+
Ser
GCT
[ENA]
¡û
>W1711293063
LZYG01000215
Acidithiobacillia
Acidithiobacillus caldus [LZYG]
5455
5547
+
Ser
GCT
[ENA]
¡û
>WENV181407061
OGCG01005074
[OGCG] hot springs metagenome; Joseph's Coat, Yellowstone National Park, Washington, USA
3221
3313
+
Ser
GCT
[ENA]
¢þ
>C181130801
CP026328
Acidithiobacillia
Acidithiobacillus caldus MTH-04 [CP026328]
664054
664146
+
Ser
GCT
-
¡û
>W09134911
ACVD01000070
Acidithiobacillia
Acidithiobacillus caldus ATCC 51756 [ACVD]
116689
116781
+
Ser
GCT
[ENA]
¡û
>C151007942
CP005986
Acidithiobacillia
Acidithiobacillus caldus ATCC 51756 [CP005986]
770798
770890
+
Ser
GCT
[Ensembl]
¡û
>C11100485
CP002573
Acidithiobacillia
Acidithiobacillus caldus SM-1 [CP002573]
742526
742618
+
Ser
GCT
[Ensembl]
¡û
>W1611004655
LXQG01000028
Acidithiobacillia
Acidithiobacillus caldus [LXQG]
12338
12430
+
Ser
GCT
[ENA]
¡û
Identical group No.12666 (37 seq.)
>W1710777663
LJBT01000093
Acidithiobacillia
Acidithiobacillus ferrooxidans [LJBT]
114844
114936
+
Ser
GCT
[ENA]
¡û
>W1711010463
LQRJ01000020
Acidithiobacillia
Acidithiobacillus ferrooxidans [LQRJ]
19317
19409
+
Ser
GCT
[ENA]
¡û
>W1711168341
LVXZ01000072
Acidithiobacillia
Acidithiobacillus ferrooxidans [LVXZ]
26209
26301
+
Ser
GCT
[ENA]
¡û
>W1711169867
LVZL01000024
Acidithiobacillia
Acidithiobacillus ferrivorans [LVZL]
41101
41193
+
Ser
GCT
[ENA]
¡û
>W1711190291
LWRY01000312
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRY]
6568
6476
-
Ser
GCT
[ENA]
¡û
>W1711190378
LWRZ01000233
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRZ]
3450
3542
+
Ser
GCT
[ENA]
¡û
>W1711190448
LWSA01000202
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSA]
16433
16525
+
Ser
GCT
[ENA]
¡û
>W1711190492
LWSB01000026
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSB]
16465
16557
+
Ser
GCT
[ENA]
¡û
>W1711190624
LWSC01000174
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSC]
70036
69944
-
Ser
GCT
[ENA]
¡û
>W1711190687
LWSD01000115
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSD]
2777
2685
-
Ser
GCT
[ENA]
¡û
>W1711293204
LZYI01000141
Acidithiobacillia
Acidithiobacillus thiooxidans [LZYI]
16451
16543
+
Ser
GCT
[ENA]
¡û
>W1711312169
MASQ01000088
Acidithiobacillia
Acidithiobacillus ferrivorans [MASQ]
2608
2516
-
Ser
GCT
[ENA]
¡û
>W1711585811
MOAD01000001
Acidithiobacillia
Acidithiobacillus albertensis [MOAD]
1523394
1523486
+
Ser
GCT
[ENA]
¡û
>WENV181296062
OFHJ01006188
[OFHJ] soil metagenome; Clay
1173
1265
+
Ser
GCT
[ENA]
¢þ
>W141206773
AZMO01000018
Acidithiobacillia
Acidithiobacillus thiooxidans A01 [AZMO]
69791
69699
-
Ser
GCT
[ENA]
¡û
>W141262941
CCCS020000049
Acidithiobacillia
Acidithiobacillus ferrivorans [CCCS]
133095
133187
+
Ser
GCT
[ENA]
¡û
>C08000401
CP001132
Acidithiobacillia
Acidithiobacillus ferrooxidans ATCC 53993 [CP001132]
766833
766925
+
Ser
GCT
[Ensembl]
¡û
>WENV170008342
AOMP01000091
[AOMP] mine drainage metagenome; low temperature acidic, metal-polluted mine stream
3581
3489
-
Ser
GCT
[ENA]
¢þ
>C191005110
AP018795
Acidithiobacillia
Acidithiobacillus ferridurans JCM 18981 [AP018795]
1828675
1828767
+
Ser
GCT
-
¡û
>W141695588
JMEB01000172
Acidithiobacillia
Acidithiobacillus thiooxidans [JMEB]
55988
55896
-
Ser
GCT
[ENA]
¡û
>W141738829
JNNH01000155
Acidithiobacillia
Acidithiobacillus ferrooxidans ferriphilum [JNNH]
74
166
+
Ser
GCT
[ENA]
¡û
>W1910831854
MXAV01000040
Acidithiobacillia
Acidithiobacillus marinus SH [MXAV]
41023
41115
+
Ser
GCT
[ENA]
¡û
>C09100354
CP001219
Acidithiobacillia
Acidithiobacillus ferrooxidans ATCC 23270 [CP001219]
587815
587907
+
Ser
GCT
[Ensembl]
¡û
>W1810257139
PQJK01000006
Acidithiobacillia
Acidithiobacillus ferridurans IO-2C [PQJK]
158169
158077
-
Ser
GCT
[ENA]
¡û
>W1810679277
QKQP01000001
Acidithiobacillia
Acidithiobacillus ferrooxidans CCM 4253 [QKQP]
866274
866182
-
Ser
GCT
[ENA]
¡û
>W10127956
AEFB01000047
Acidithiobacillia
Acidithiobacillus sp. GGI-221 [AEFB]
805
897
+
Ser
GCT
[ENA]
¡û
>C11100721
CP002985
Acidithiobacillia
Acidithiobacillus ferrivorans SS3 [CP002985]
1145688
1145780
+
Ser
GCT
[Ensembl]
¡û
>W11135501
AEFB01000047
Acidithiobacillia
Acidithiobacillus sp. GGI-221 [AEFB]
805
897
+
Ser
GCT
[ENA]
¡û
>W11164285
AFJD01000011
Acidithiobacillia
Acidithiobacillus ferrivorans SS3 [AFJD]
23857
23765
-
Ser
GCT
[ENA]
¡û
>W11168533
AFOH01000053
Acidithiobacillia
Acidithiobacillus thiooxidans ATCC 19377 [AFOH]
3256
3164
-
Ser
GCT
[ENA]
¡û
>W1610627911
LIEB01000032
Nitrospirota
Leptospirillum sp. YQP-1 [LIEB]
30451
30359
-
Ser
GCT
[ENA]
¡û
>W1610641849
LJBT01000093
Acidithiobacillia
Acidithiobacillus ferrooxidans [LJBT]
114844
114936
+
Ser
GCT
[ENA]
¡û
>W1610858983
LQRJ01000020
Acidithiobacillia
Acidithiobacillus ferrooxidans [LQRJ]
19317
19409
+
Ser
GCT
[ENA]
¡û
>W1610978256
LVXZ01000072
Acidithiobacillia
Acidithiobacillus ferrooxidans [LVXZ]
26209
26301
+
Ser
GCT
[ENA]
¡û
>W1611057370
MASQ01000088
Acidithiobacillia
Acidithiobacillus ferrivorans [MASQ]
2608
2516
-
Ser
GCT
[ENA]
¡û
>W1710743688
LGYM01000027
Acidithiobacillia
Acidithiobacillus thiooxidans [LGYM]
148761
148669
-
Ser
GCT
[ENA]
¡û
>W1710759038
LIEB01000032
Nitrospirota
Leptospirillum sp. YQP-1 [LIEB]
30451
30359
-
Ser
GCT
[ENA]
¡û
Identical group No.18208 (3 seq.)
>W1710798667
LJTU01000030
Acidithiobacillia
Acidithiobacillales bacterium SG8_45 [LJTU]
2814
2722
-
Ser
GCT
[ENA]
¡û
>C181000516
AP014836
Gammaproteobacteria
Candidatus Nitrosoglobus terrae TAO100 [AP014836]
1529492
1529400
-
Ser
GCT
-
¡û
>W1610662624
LJTU01000030
Acidithiobacillia
Acidithiobacillales bacterium SG8_45 [LJTU]
2814
2722
-
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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