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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acidithiobacillia
Anticodon = GGA
HIT:
5 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.14661 (1 seq.)
>W141262916
CCCS020000035
Acidithiobacillia
Acidithiobacillus ferrivorans [CCCS]
243812
243721
-
Ser
GGA
[ENA]
¡û
Identical group No.25115 (4 seq.)
>W1710799187
LJUK01000104
Acidithiobacillia
Acidithiobacillales bacterium SM23_46 [LJUK]
6627
6537
-
Ser
GGA
[ENA]
¡û
>W1710799744
LJVB01000002
Acidithiobacillia
Acidithiobacillales bacterium SM1_46 [LJVB]
38756
38846
+
Ser
GGA
[ENA]
¡û
>W1610663144
LJUK01000104
Acidithiobacillia
Acidithiobacillales bacterium SM23_46 [LJUK]
6627
6537
-
Ser
GGA
[ENA]
¡û
>W1610663701
LJVB01000002
Acidithiobacillia
Acidithiobacillales bacterium SM1_46 [LJVB]
38756
38846
+
Ser
GGA
[ENA]
¡û
Identical group No.30544 (1 seq.)
>C09100395
CP001219
Acidithiobacillia
Acidithiobacillus ferrooxidans ATCC 23270 [CP001219]
1033480
1033391
-
Ser
GGA
[Ensembl]
¡û
Identical group No.34634 (6 seq.)
>W1711190363
LWRZ01000217
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRZ]
8247
8336
+
Ser
GGA
[ENA]
¡û
>W1711190505
LWSB01000089
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSB]
927
1016
+
Ser
GGA
[ENA]
¡û
>W1711190715
LWSD01000254
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSD]
1494
1405
-
Ser
GGA
[ENA]
¡û
>W1711293124
LZYI01000014
Acidithiobacillia
Acidithiobacillus thiooxidans [LZYI]
15738
15649
-
Ser
GGA
[ENA]
¡û
>W141206730
AZMO01000001
Acidithiobacillia
Acidithiobacillus thiooxidans A01 [AZMO]
130216
130305
+
Ser
GGA
[ENA]
¡û
>W141695559
JMEB01000106
Acidithiobacillia
Acidithiobacillus thiooxidans [JMEB]
23152
23063
-
Ser
GGA
[ENA]
¡û
Identical group No.41685 (2 seq.)
>W10127965
AEFB01000240
Acidithiobacillia
Acidithiobacillus sp. GGI-221 [AEFB]
2355
2266
-
Ser
GGA
[ENA]
¡û
>W11135510
AEFB01000240
Acidithiobacillia
Acidithiobacillus sp. GGI-221 [AEFB]
2355
2266
-
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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