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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acidithiobacillia
Anticodon = TCT
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.276700 (14 seq.)
>W1711220209
LXQG01000102
Acidithiobacillia
Acidithiobacillus caldus [LXQG]
2268
2192
-
Arg
TCT
[ENA]
¡û
>W1711292969
LZYE01000197
Acidithiobacillia
Acidithiobacillus caldus [LZYE]
26446
26370
-
Arg
TCT
[ENA]
¡û
>W1711293012
LZYF01000156
Acidithiobacillia
Acidithiobacillus caldus [LZYF]
12474
12550
+
Arg
TCT
[ENA]
¡û
>W1711293055
LZYG01000157
Acidithiobacillia
Acidithiobacillus caldus [LZYG]
12108
12184
+
Arg
TCT
[ENA]
¡û
>W1711293110
LZYH01000817
Acidithiobacillia
Acidithiobacillus caldus [LZYH]
671
595
-
Arg
TCT
[ENA]
¡û
>WENV181406241
OGCG01000045
[OGCG] hot springs metagenome; Joseph's Coat, Yellowstone National Park, Washington, USA
33963
34039
+
Arg
TCT
[ENA]
¢þ
>C181130811
CP026328
Acidithiobacillia
Acidithiobacillus caldus MTH-04 [CP026328]
1816611
1816687
+
Arg
TCT
-
¡û
>W09134925
ACVD01000116
Acidithiobacillia
Acidithiobacillus caldus ATCC 51756 [ACVD]
11521
11597
+
Arg
TCT
[ENA]
¡û
>W1810758273
QPIJ01000003
Gammaproteobacteria
Halomonas rituensis TQ8S [QPIJ]
109602
109526
-
Arg
TCT
[ENA]
¡û
>C151007950
CP005986
Acidithiobacillia
Acidithiobacillus caldus ATCC 51756 [CP005986]
1698311
1698387
+
Arg
TCT
[Ensembl]
¡û
>W1510071611
CDGR01000150
Gammaproteobacteria
Halomonas salina B6 [CDGR]
24823
24747
-
Arg
TCT
[ENA]
¡û
>C11100494
CP002573
Acidithiobacillia
Acidithiobacillus caldus SM-1 [CP002573]
1891530
1891606
+
Arg
TCT
[Ensembl]
¡û
>W1611004681
LXQG01000102
Acidithiobacillia
Acidithiobacillus caldus [LXQG]
2268
2192
-
Arg
TCT
[ENA]
¡û
>W1710544891
FOBC01000028
Gammaproteobacteria
Halomonas daqiaonensis [FOBC]
18793
18869
+
Arg
TCT
[ENA]
¡û
Identical group No.307137 (5 seq.)
>W1711169863
LVZL01000011
Acidithiobacillia
Acidithiobacillus ferrivorans [LVZL]
159629
159553
-
Arg
TCT
[ENA]
¡û
>W141262894
CCCS020000003
Acidithiobacillia
Acidithiobacillus ferrivorans [CCCS]
34073
33997
-
Arg
TCT
[ENA]
¡û
>WENV170008637
AOMQ01010856
[AOMQ] mine drainage metagenome; low temperature acidic, metal-polluted mine stream
441
365
-
Arg
TCT
[ENA]
¢þ
>C11100753
CP002985
Acidithiobacillia
Acidithiobacillus ferrivorans SS3 [CP002985]
1359657
1359581
-
Arg
TCT
[Ensembl]
¡û
>W11164267
AFJD01000005
Acidithiobacillia
Acidithiobacillus ferrivorans SS3 [AFJD]
125345
125421
+
Arg
TCT
[ENA]
¡û
Identical group No.320404 (7 seq.)
>W1710777639
LJBT01000013
Acidithiobacillia
Acidithiobacillus ferrooxidans [LJBT]
219134
219210
+
Arg
TCT
[ENA]
¡û
>W1711010481
LQRJ01000055
Acidithiobacillia
Acidithiobacillus ferrooxidans [LQRJ]
25652
25576
-
Arg
TCT
[ENA]
¡û
>W1810679266
QKQP01000001
Acidithiobacillia
Acidithiobacillus ferrooxidans CCM 4253 [QKQP]
537352
537428
+
Arg
TCT
[ENA]
¡û
>W1610627893
LIEB01000017
Nitrospirota
Leptospirillum sp. YQP-1 [LIEB]
219108
219184
+
Arg
TCT
[ENA]
¡û
>W1610641825
LJBT01000013
Acidithiobacillia
Acidithiobacillus ferrooxidans [LJBT]
219134
219210
+
Arg
TCT
[ENA]
¡û
>W1610859001
LQRJ01000055
Acidithiobacillia
Acidithiobacillus ferrooxidans [LQRJ]
25652
25576
-
Arg
TCT
[ENA]
¡û
>W1710759020
LIEB01000017
Nitrospirota
Leptospirillum sp. YQP-1 [LIEB]
219108
219184
+
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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