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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Chloroflexi
Anticodon = TCG
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.452423 (40 seq.)
>W1711272455
LZFJ01000001
Chloroflexota
Dehalococcoides mccartyi [LZFJ]
364436
364511
+
Arg
TCG
[ENA]
¡û
>W1711272495
LZFK01000003
Chloroflexota
Dehalococcoides mccartyi [LZFK]
11941
11866
-
Arg
TCG
[ENA]
¡û
>C171019767
CP013074
Chloroflexota
Dehalococcoides mccartyi CG3 [CP013074]
899717
899642
-
Arg
TCG
-
¡û
>C171063642
CP017572
Chloroflexota
Dehalococcoides mccartyi [CP017572]
799281
799206
-
Arg
TCG
-
¡û
>C171100372
CP019865
Chloroflexota
Dehalococcoides mccartyi KBTCE2 [CP019865]
777254
777179
-
Arg
TCG
-
¡û
>C171100417
CP019866
Chloroflexota
Dehalococcoides mccartyi KBTCE3 [CP019866]
734932
734857
-
Arg
TCG
-
¡û
>C171101951
CP019968
Chloroflexota
Dehalococcoides mccartyi KBVC1 [CP019968]
718760
718685
-
Arg
TCG
-
¡û
>C171101997
CP019969
Chloroflexota
Dehalococcoides mccartyi KBVC2 [CP019969]
725276
725201
-
Arg
TCG
-
¡û
>C171102538
CP019999
Chloroflexota
Dehalococcoides mccartyi KBTCE1 [CP019999]
776264
776189
-
Arg
TCG
-
¡û
>C007617
CP000688
Chloroflexota
Dehalococcoides mccartyi [CP000688]
839148
839073
-
Arg
TCG
[Ensembl]
¡û
>C007664
AJ965256
Chloroflexota
Dehalococcoides mccartyi CBDB1 [AJ965256]
749532
749457
-
Arg
TCG
[Ensembl]
¡û
>C007710
CP000027
Chloroflexota
Dehalococcoides mccartyi 195 [CP000027]
877717
877642
-
Arg
TCG
[Ensembl]
¡û
>W08002832
ABFQ01000001
Chloroflexota
Dehalococcoides mccartyi VS [ABFQ]
19054
19129
+
Arg
TCG
[ENA]
¡û
>C181003156
AP017649
Chloroflexota
Dehalococcoides mccartyi UCH-ATV1 [AP017649]
760724
760649
-
Arg
TCG
-
¡û
>C191160399
CP038470
Chloroflexota
Dehalococcoides mccartyi FL2 [CP038470]
781848
781773
-
Arg
TCG
-
¡û
>W09105041
AAOM01000002
Chloroflexota
Dehalococcoides mccartyi BAV1 [AAOM]
114979
114904
-
Arg
TCG
[ENA]
¡û
>W141809031
JPRE01000005
Chloroflexota
Dehalococcoides mccartyi [JPRE]
396381
396456
+
Arg
TCG
[ENA]
¡û
>C141007787
CP006730
Chloroflexota
Dehalococcoides mccartyi GY50 [CP006730]
783966
783891
-
Arg
TCG
[Ensembl]
¡û
>W1810107570
PHFC01000167
Chloroflexota
Dehalococcoides mccartyi KKB3.003 [PHFC]
2634
2559
-
Arg
TCG
[ENA]
¡û
>W1810266199
PQVQ01000023
Chloroflexota
Dehalococcoides mccartyi GEO12 [PQVQ]
511264
511189
-
Arg
TCG
[ENA]
¡û
>W1810603270
QGLC01000009
Chloroflexota
Dehalococcoides mccartyi RC [QGLC]
573405
573330
-
Arg
TCG
[ENA]
¡û
>SRA1013645
SRR023396.335093
Brazos-Trinity Basin Sediment Metagenome: IODP Site 1320 (SRP001095)
174
249
+
Arg
TCG
[SRA]
>C151003230
AP014722
Chloroflexota
Dehalococcoides sp. UCH007 [AP014722]
767605
767530
-
Arg
TCG
[Ensembl]
¡û
>C151015148
CP006949
Chloroflexota
Dehalococcoides mccartyi CG1 [CP006949]
803351
803276
-
Arg
TCG
[Ensembl]
¡û
>C151015194
CP006950
Chloroflexota
Dehalococcoides mccartyi CG4 [CP006950]
841601
841526
-
Arg
TCG
[Ensembl]
¡û
>C151015240
CP006951
Chloroflexota
Dehalococcoides mccartyi CG5 [CP006951]
762577
762502
-
Arg
TCG
[Ensembl]
¡û
>W10109941
ADBO01000001
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
565412
565337
-
Arg
TCG
[ENA]
¡û
>C10105231
CP001924
Chloroflexota
Dehalococcoides mccartyi [CP001924]
766661
766586
-
Arg
TCG
[Ensembl]
¡û
>C10105277
CP001827
Chloroflexota
Dehalococcoides mccartyi VS [CP001827]
772458
772383
-
Arg
TCG
[Ensembl]
¡û
>W11112378
ADBO01000001
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
565412
565337
-
Arg
TCG
[ENA]
¡û
>C161000352
AP014563
Chloroflexota
Dehalococcoides mccartyi IBARAKI [AP014563]
799049
798974
-
Arg
TCG
-
¡û
>C131012562
CP004079
Chloroflexota
Dehalococcoides mccartyi DCMB5 [CP004079]
861759
861684
-
Arg
TCG
[Ensembl]
¡û
>W1610520999
JGVX01000003
Chloroflexota
Dehalococcoides mccartyi [JGVX]
50884
50809
-
Arg
TCG
[ENA]
¡û
>W1610521065
JGYD01000029
Chloroflexota
Dehalococcoides mccartyi [JGYD]
54602
54677
+
Arg
TCG
[ENA]
¡û
>W1610541337
JSWM01000007
Chloroflexota
Dehalococcoides mccartyi [JSWM]
712852
712777
-
Arg
TCG
[ENA]
¡û
>W1611031983
LZFJ01000001
Chloroflexota
Dehalococcoides mccartyi [LZFJ]
364436
364511
+
Arg
TCG
[ENA]
¡û
>W1611032023
LZFK01000003
Chloroflexota
Dehalococcoides mccartyi [LZFK]
11941
11866
-
Arg
TCG
[ENA]
¡û
>W1710617249
JGVX01000003
Chloroflexota
Dehalococcoides mccartyi [JGVX]
50884
50809
-
Arg
TCG
[ENA]
¡û
>W1710617315
JGYD01000029
Chloroflexota
Dehalococcoides mccartyi [JGYD]
54602
54677
+
Arg
TCG
[ENA]
¡û
>W1710644468
JSWM01000007
Chloroflexota
Dehalococcoides mccartyi [JSWM]
712852
712777
-
Arg
TCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK