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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Elusimicrobiota
Anticodon = CTC
HIT:
29 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.235248 (3 seq.)
>W1711413304
MGVQ01000036
Elusimicrobiota
Elusimicrobia bacterium RIFOXYC2_FULL_34_12 [MGVQ]
14355
14432
+
Glu
CTC
[ENA]
¡û
>W1711413369
MGVS01000030
Elusimicrobiota
Elusimicrobia bacterium RIFOXYD2_FULL_34_15 [MGVS]
35758
35835
+
Glu
CTC
[ENA]
¡û
>W1711413397
MGVT01000042
Elusimicrobiota
Elusimicrobia bacterium RIFOXYD2_FULL_34_30 [MGVT]
11152
11075
-
Glu
CTC
[ENA]
¡û
Identical group No.238662 (1 seq.)
>W1910727676
MGUQ01000008
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_01_FULL_54_10 [MGUQ]
22038
21963
-
Glu
CTC
[ENA]
¡û
Identical group No.276680 (8 seq.)
>W1711412168
MGTX01000013
Elusimicrobiota
Elusimicrobia bacterium GWA2_66_18 [MGTX]
14054
13978
-
Glu
CTC
[ENA]
¡û
>W1711412503
MGUH01000054
Elusimicrobiota
Elusimicrobia bacterium GWC2_65_9 [MGUH]
1455
1379
-
Glu
CTC
[ENA]
¡û
>W1711412644
MGUL01000025
Elusimicrobiota
Elusimicrobia bacterium RBG_16_66_12 [MGUL]
6161
6085
-
Glu
CTC
[ENA]
¡û
>W1711413357
MGVR01000492
Elusimicrobiota
Elusimicrobia bacterium RIFOXYD12_FULL_66_9 [MGVR]
1247
1323
+
Glu
CTC
[ENA]
¡û
>WENV183683066
ORMF010524461
[ORMF] groundwater metagenome; groundwater
463
389
-
Glu
CTC
[ENA]
¢þ
>WENV183687736
ORMF011183538
[ORMF] groundwater metagenome; groundwater
483
407
-
Glu
CTC
[ENA]
¢þ
>WENV183694395
ORMF012226814
[ORMF] groundwater metagenome; groundwater
316
240
-
Glu
CTC
[ENA]
¢þ
>WENV170555899
CXWL01003016
[CXWL] groundwater metagenome; biofilm material
83416
83492
+
Glu
CTC
[ENA]
¢þ
Identical group No.276806 (2 seq.)
>W1711412768
MGVA01000028
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA12_FULL_51_18 [MGVA]
1830
1754
-
Glu
CTC
[ENA]
¡û
>W1711413008
MGVG01000054
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_53_38 [MGVG]
24982
25058
+
Glu
CTC
[ENA]
¡û
Identical group No.277522 (5 seq.)
>C08011129
AP009510
Elusimicrobiota
Candidatus Endomicrobium trichonymphae Rs-D17 genomovar Ri2008 [AP009510]
1091609
1091535
-
Glu
CTC
-
¡û
>WENV170715474
LQAB01001654
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
455
530
+
Glu
CTC
[ENA]
¢þ
>WENV170716320
LSPZ01001302
[LSPZ] termite gut metagenome; viral DNA filtered from gut of termites from termite colony 2
433
506
+
Glu
CTC
[ENA]
¢þ
>C181002086
AP017459
Elusimicrobiota
Candidatus Endomicrobium trichonymphae Rs-D17 [AP017459]
1080261
1080187
-
Glu
CTC
-
¡û
>ENV000882
AP009510
Environmental sample from ENV division of INSDC
1091610
1091532
-
Glu
CTC
[ENA]
Identical group No.282870 (2 seq.)
>C08004644
CP001055
Elusimicrobiota
Elusimicrobium minutum Pei191 [CP001055]
216832
216907
+
Glu
CTC
[Ensembl]
¡û
>W09107463
ABIQ01000002
Elusimicrobiota
Elusimicrobium minutum Pei191 [ABIQ]
227127
227202
+
Glu
CTC
[ENA]
¡û
Identical group No.298298 (4 seq.)
>W1711411929
MGTR01000100
Elusimicrobiota
Elusimicrobia bacterium GWA2_38_7 [MGTR]
6344
6417
+
Glu
CTC
[ENA]
¡û
>W1910727596
MGUN01000025
Elusimicrobiota
Elusimicrobia bacterium RIFCSPHIGHO2_02_FULL_39_36 [MGUN]
45103
45030
-
Glu
CTC
[ENA]
¡û
>W1910727835
MGUU01000013
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_02_FULL_39_32 [MGUU]
45141
45068
-
Glu
CTC
[ENA]
¡û
>W1910727909
MGUW01000022
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_12_FULL_39_28 [MGUW]
45144
45071
-
Glu
CTC
[ENA]
¡û
Identical group No.302824 (2 seq.)
>W1711401402
MFNG01000030
Unclassified
Candidatus Levybacteria bacterium RBG_13_35_9 [MFNG]
4419
4493
+
Glu
CTC
[ENA]
¡û
>W1711412303
MGUB01000035
Elusimicrobiota
Elusimicrobia bacterium GWC2_51_8 [MGUB]
6760
6836
+
Glu
CTC
[ENA]
¡û
Identical group No.302825 (5 seq.)
>W1711411956
MGTS01000021
Elusimicrobiota
Elusimicrobia bacterium GWA2_51_34 [MGTS]
170295
170370
+
Glu
CTC
[ENA]
¡û
>W1711412307
MGUB01000042
Elusimicrobiota
Elusimicrobia bacterium GWC2_51_8 [MGUB]
6022
5947
-
Glu
CTC
[ENA]
¡û
>W1711412590
MGUJ01000096
Elusimicrobiota
Elusimicrobia bacterium GWF2_52_66 [MGUJ]
5809
5734
-
Glu
CTC
[ENA]
¡û
>WENV181231304
OFEK01018806
[OFEK] activated sludge metagenome; Anaerobic digester
1657
1581
-
Glu
CTC
[ENA]
¢þ
>WENV077241
AAFX01010792
Soil microbial communities from Minnesota Farm
402
480
+
Glu
CTC
[ENA]
Identical group No.322654 (1 seq.)
>W1711412185
MGTY01000010
Elusimicrobiota
Elusimicrobia bacterium GWA2_69_24 [MGTY]
22894
22968
+
Glu
CTC
[ENA]
¡û
Identical group No.322882 (1 seq.)
>W1711581883
MNUR01000055
Elusimicrobiota
Elusimicrobia bacterium CG1_02_56_21 [MNUR]
9854
9779
-
Glu
CTC
[ENA]
¡û
Identical group No.359635 (1 seq.)
>W1910727931
MGUX01000157
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_12_FULL_59_9 [MGUX]
28891
28816
-
Glu
CTC
[ENA]
¡û
Identical group No.361949 (1 seq.)
>W1711413217
MGVN01000113
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_49_7 [MGVN]
6074
6149
+
Glu
CTC
[ENA]
¡û
Identical group No.362296 (5 seq.)
>W1710917261
LNVX01000218
Elusimicrobiota
Candidatus Endomicrobium trichonymphae [LNVX]
105047
104972
-
Glu
CTC
[ENA]
¡û
>W1710917331
LNVX01000508
Elusimicrobiota
Candidatus Endomicrobium trichonymphae [LNVX]
3007
2932
-
Glu
CTC
[ENA]
¡û
>W1710917377
LNVX01000857
Elusimicrobiota
Candidatus Endomicrobium trichonymphae [LNVX]
3561
3486
-
Glu
CTC
[ENA]
¡û
>WENV170715536
LQAB01004664
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
8666
8591
-
Glu
CTC
[ENA]
¢þ
>WENV170715924
LQAB01020753
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
1115
1190
+
Glu
CTC
[ENA]
¢þ
Identical group No.382205 (2 seq.)
>W1711411997
MGTT01000015
Elusimicrobiota
Elusimicrobia bacterium GWA2_56_46 [MGTT]
215473
215397
-
Glu
CTC
[ENA]
¡û
>W1711412358
MGUC01000031
Elusimicrobiota
Elusimicrobia bacterium GWC2_56_31 [MGUC]
23936
24012
+
Glu
CTC
[ENA]
¡û
Identical group No.382206 (4 seq.)
>W1711412719
MGUZ01000004
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA12_FULL_49_49 [MGUZ]
49219
49143
-
Glu
CTC
[ENA]
¡û
>W1711412907
MGVE01000006
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_47_53 [MGVE]
283930
284006
+
Glu
CTC
[ENA]
¡û
>W1711413112
MGVK01000024
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB12_FULL_50_12 [MGVK]
11414
11490
+
Glu
CTC
[ENA]
¡û
>W1711413136
MGVL01000008
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_46_23 [MGVL]
43504
43580
+
Glu
CTC
[ENA]
¡û
Identical group No.401096 (1 seq.)
>W1712038739
NFJD01000004
Elusimicrobiota
Elusimicrobium sp. An273 [NFJD]
215292
215219
-
Glu
CTC
[ENA]
¡û
Identical group No.414658 (1 seq.)
>W1910727738
MGUR01000058
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_01_FULL_59_12 [MGUR]
6551
6625
+
Glu
CTC
[ENA]
¡û
Identical group No.415181 (1 seq.)
>C151053026
CP009498
Elusimicrobiota
Endomicrobium proavitum Rsa215 [CP009498]
1258775
1258701
-
Glu
CTC
[Ensembl]
¡û
Identical group No.436913 (2 seq.)
>WENV183683974
ORMF010646936
[ORMF] groundwater metagenome; groundwater
425
501
+
Glu
CTC
[ENA]
¢þ
>W1910727605
MGUO01000068
Elusimicrobiota
Elusimicrobia bacterium RIFCSPHIGHO2_02_FULL_57_9 [MGUO]
8632
8556
-
Glu
CTC
[ENA]
¡û
Identical group No.458172 (7 seq.)
>W1711391289
MELI01000057
Actinomycetota
Candidatus Aquicultor primus GWC2_53_9 [MELI]
19464
19389
-
Glu
CTC
[ENA]
¡û
>W1711412044
MGTU01000018
Elusimicrobiota
Elusimicrobia bacterium GWA2_61_42 [MGTU]
37633
37708
+
Glu
CTC
[ENA]
¡û
>W1711412086
MGTV01000028
Elusimicrobiota
Elusimicrobia bacterium GWA2_62_23 [MGTV]
55534
55609
+
Glu
CTC
[ENA]
¡û
>W1711412218
MGTZ01000004
Elusimicrobiota
Elusimicrobia bacterium GWB2_63_16 [MGTZ]
36058
35983
-
Glu
CTC
[ENA]
¡û
>W1711412265
MGUA01000007
Elusimicrobiota
Elusimicrobia bacterium GWB2_63_22 [MGUA]
94135
94060
-
Glu
CTC
[ENA]
¡û
>W1711412407
MGUE01000029
Elusimicrobiota
Elusimicrobia bacterium GWC2_61_25 [MGUE]
37624
37699
+
Glu
CTC
[ENA]
¡û
>W1711412476
MGUG01000031
Elusimicrobiota
Elusimicrobia bacterium GWC2_64_44 [MGUG]
74781
74856
+
Glu
CTC
[ENA]
¡û
Identical group No.458185 (1 seq.)
>W1711412850
MGVC01000048
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_39_19 [MGVC]
31400
31474
+
Glu
CTC
[ENA]
¡û
Identical group No.505281 (3 seq.)
>WENV183685784
ORMF010900928
[ORMF] groundwater metagenome; groundwater
669
744
+
Glu
CTC
[ENA]
¢þ
>W1910727673
MGUP01001008
Elusimicrobiota
Elusimicrobia bacterium RIFCSPHIGHO2_02_FULL_61_10 [MGUP]
2858
2783
-
Glu
CTC
[ENA]
¡û
>W1910727868
MGUV01000109
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_02_FULL_61_11 [MGUV]
45144
45069
-
Glu
CTC
[ENA]
¡û
Identical group No.508734 (3 seq.)
>W1711412566
MGUI01000052
Elusimicrobiota
Elusimicrobia bacterium GWD2_63_28 [MGUI]
84008
83933
-
Glu
CTC
[ENA]
¡û
>W1711412826
MGVB01000148
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA12_FULL_57_11 [MGVB]
13195
13270
+
Glu
CTC
[ENA]
¡û
>W1711413011
MGVH01000009
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_58_8 [MGVH]
30027
30102
+
Glu
CTC
[ENA]
¡û
Identical group No.582264 (2 seq.)
>W1910727537
MGUM01000032
Elusimicrobiota
Elusimicrobia bacterium RIFCSPHIGHO2_01_FULL_64_10 [MGUM]
1843
1917
+
Glu
CTC
[ENA]
¡û
>W1910727785
MGUT01000017
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_01_FULL_64_13 [MGUT]
2485
2559
+
Glu
CTC
[ENA]
¡û
Identical group No.656775 (4 seq.)
>W1711412482
MGUG01000050
Elusimicrobiota
Elusimicrobia bacterium GWC2_64_44 [MGUG]
45682
45608
-
Glu
CTC
[ENA]
¡û
>C151078347
CP011216
Unclassified
candidate division Kazan bacterium GW2011_GWA1_50_15 [CP011216]
243568
243642
+
Glu
CTC
-
¡û
>W1511618444
LCQY01000001
Unclassified
candidate division Kazan bacterium GW2011_GWC1_52_13 GW2011_GWC1_52_13 [LCQY]
101570
101496
-
Glu
CTC
[ENA]
¡û
>W1511618542
LCRB01000002
Unclassified
candidate division Kazan bacterium GW2011_GWB1_52_7 GW2011_GWB1_52_7 [LCRB]
95512
95438
-
Glu
CTC
[ENA]
¡û
Identical group No.683963 (11 seq.)
>WENV180320993
OBKQ01078425
[OBKQ] soil metagenome; Clay
254
180
-
Glu
CTC
[ENA]
¢þ
>WENV180342830
OBLJ01150510
[OBLJ] soil metagenome; Clay
132
58
-
Glu
CTC
[ENA]
¢þ
>WENV180350515
OBLQ010001999
[OBLQ] soil metagenome; soil
1391
1465
+
Glu
CTC
[ENA]
¢þ
>WENV181293342
OFHG01001661
[OFHG] soil metagenome; Clay
229
303
+
Glu
CTC
[ENA]
¢þ
>WENV181294470
OFHH01003613
[OFHH] soil metagenome; Clay
2292
2366
+
Glu
CTC
[ENA]
¢þ
>WENV170661882
JXWV01143760
[JXWV] soil metagenome; rice field; organic FYM Plot
243
317
+
Glu
CTC
[ENA]
¢þ
>WENV170661883
JXWV01143761
[JXWV] soil metagenome; rice field; organic FYM Plot
217
143
-
Glu
CTC
[ENA]
¢þ
>W1910697379
MEKR01000006
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_61_28 [MEKR]
2524
2450
-
Glu
CTC
[ENA]
¡û
>W1910697635
MEKX01000076
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_54_10 [MEKX]
22288
22362
+
Glu
CTC
[ENA]
¡û
>W1910697718
MEKZ01000347
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_60_22 [MEKZ]
9264
9190
-
Glu
CTC
[ENA]
¡û
>W1910727650
MGUP01000661
Elusimicrobiota
Elusimicrobia bacterium RIFCSPHIGHO2_02_FULL_61_10 [MGUP]
286
212
-
Glu
CTC
[ENA]
¡û
Identical group No.713536 (1 seq.)
>W1711413195
MGVN01000032
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_49_7 [MGVN]
3612
3541
-
Glu
CTC
[ENA]
¡û
Identical group No.761740 (1 seq.)
>W1711583332
MNXB01000033
Elusimicrobiota
Elusimicrobia bacterium CG1_02_37_114 [MNXB]
19206
19279
+
Glu
CTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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