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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Elusimicrobiota
Anticodon = GCT
HIT:
33 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.2438 (3 seq.)
>W1710917275
LNVX01000284
Elusimicrobiota
Candidatus Endomicrobium trichonymphae [LNVX]
347
253
-
Ser
GCT
[ENA]
¡û
>WENV170715548
LQAB01005060
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
8992
9086
+
Ser
GCT
[ENA]
¢þ
>WENV170715601
LQAB01007151
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
4880
4974
+
Ser
GCT
[ENA]
¢þ
Identical group No.2439 (2 seq.)
>W1710917269
LNVX01000238
Elusimicrobiota
Candidatus Endomicrobium trichonymphae [LNVX]
8197
8291
+
Ser
GCT
[ENA]
¡û
>WENV170715879
LQAB01018726
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
1662
1756
+
Ser
GCT
[ENA]
¢þ
Identical group No.4469 (2 seq.)
>W1710917356
LNVX01000631
Elusimicrobiota
Candidatus Endomicrobium trichonymphae [LNVX]
6708
6801
+
Ser
GCT
[ENA]
¡û
>WENV170715602
LQAB01007193
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
320
413
+
Ser
GCT
[ENA]
¢þ
Identical group No.5903 (3 seq.)
>C08011153
AP009510
Elusimicrobiota
Candidatus Endomicrobium trichonymphae Rs-D17 genomovar Ri2008 [AP009510]
45987
45895
-
Ser
GCT
-
¡û
>C181002110
AP017459
Elusimicrobiota
Candidatus Endomicrobium trichonymphae Rs-D17 [AP017459]
47407
47315
-
Ser
GCT
-
¡û
>ENV000841
AP009510
Environmental sample from ENV division of INSDC
45988
45892
-
Ser
GCT
[ENA]
Identical group No.7193 (4 seq.)
>W1711412718
MGUZ01000004
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA12_FULL_49_49 [MGUZ]
34588
34681
+
Ser
GCT
[ENA]
¡û
>W1711412933
MGVE01000015
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_47_53 [MGVE]
34130
34223
+
Ser
GCT
[ENA]
¡û
>W1711413115
MGVK01000024
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB12_FULL_50_12 [MGVK]
25816
25723
-
Ser
GCT
[ENA]
¡û
>W1711413156
MGVL01000016
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_46_23 [MGVL]
34131
34224
+
Ser
GCT
[ENA]
¡û
Identical group No.7295 (1 seq.)
>W1910727543
MGUM01000067
Elusimicrobiota
Elusimicrobia bacterium RIFCSPHIGHO2_01_FULL_64_10 [MGUM]
5331
5239
-
Ser
GCT
[ENA]
¡û
Identical group No.7679 (1 seq.)
>C151053020
CP009498
Elusimicrobiota
Endomicrobium proavitum Rsa215 [CP009498]
1374586
1374681
+
Ser
GCT
[Ensembl]
¡û
Identical group No.7892 (1 seq.)
>W1910727805
MGUT01000076
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_01_FULL_64_13 [MGUT]
66626
66535
-
Ser
GCT
[ENA]
¡û
Identical group No.8216 (1 seq.)
>W1910727619
MGUO01000191
Elusimicrobiota
Elusimicrobia bacterium RIFCSPHIGHO2_02_FULL_57_9 [MGUO]
1142
1235
+
Ser
GCT
[ENA]
¡û
Identical group No.8333 (3 seq.)
>W1711412088
MGTV01000035
Elusimicrobiota
Elusimicrobia bacterium GWA2_62_23 [MGTV]
29180
29272
+
Ser
GCT
[ENA]
¡û
>W1711412464
MGUG01000017
Elusimicrobiota
Elusimicrobia bacterium GWC2_64_44 [MGUG]
13895
13987
+
Ser
GCT
[ENA]
¡û
>W1711424035
MIDQ01000008
Verrucomicrobiota
Verrucomicrobia bacterium GWF2_62_7 [MIDQ]
4667
4759
+
Ser
GCT
[ENA]
¡û
Identical group No.8334 (1 seq.)
>W1711412868
MGVC01000079
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_39_19 [MGVC]
2128
2038
-
Ser
GCT
[ENA]
¡û
Identical group No.8335 (1 seq.)
>W1711413418
MGVT01000114
Elusimicrobiota
Elusimicrobia bacterium RIFOXYD2_FULL_34_30 [MGVT]
4789
4881
+
Ser
GCT
[ENA]
¡û
Identical group No.8437 (2 seq.)
>C08004651
CP001055
Elusimicrobiota
Elusimicrobium minutum Pei191 [CP001055]
482773
482865
+
Ser
GCT
[Ensembl]
¡û
>W09107470
ABIQ01000002
Elusimicrobiota
Elusimicrobium minutum Pei191 [ABIQ]
493088
493180
+
Ser
GCT
[ENA]
¡û
Identical group No.8710 (3 seq.)
>W1910727587
MGUN01000024
Elusimicrobiota
Elusimicrobia bacterium RIFCSPHIGHO2_02_FULL_39_36 [MGUN]
79153
79246
+
Ser
GCT
[ENA]
¡û
>W1910727837
MGUU01000014
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_02_FULL_39_32 [MGUU]
79150
79243
+
Ser
GCT
[ENA]
¡û
>W1910727886
MGUW01000014
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_12_FULL_39_28 [MGUW]
53520
53427
-
Ser
GCT
[ENA]
¡û
Identical group No.9277 (1 seq.)
>W1711413057
MGVI01000437
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_69_6 [MGVI]
812
720
-
Ser
GCT
[ENA]
¡û
Identical group No.10071 (2 seq.)
>W1711412875
MGVD01000008
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_40_6 [MGVD]
7688
7778
+
Ser
GCT
[ENA]
¡û
>W1711413187
MGVM01000209
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_48_7 [MGVM]
9354
9262
-
Ser
GCT
[ENA]
¡û
Identical group No.10072 (1 seq.)
>W1711413224
MGVN01000167
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_49_7 [MGVN]
17890
17799
-
Ser
GCT
[ENA]
¡û
Identical group No.10306 (1 seq.)
>W1711412649
MGUL01000037
Elusimicrobiota
Elusimicrobia bacterium RBG_16_66_12 [MGUL]
3685
3593
-
Ser
GCT
[ENA]
¡û
Identical group No.10453 (8 seq.)
>W1712038725
NFJD01000002
Elusimicrobiota
Elusimicrobium sp. An273 [NFJD]
49203
49111
-
Ser
GCT
[ENA]
¡û
>WENV180231251
OBCN01005208
[OBCN] human gut metagenome; human gut
1230
1138
-
Ser
GCT
[ENA]
¢þ
>WENV181647616
OGNQ01000215
[OGNQ] metagenome; Human gut stool
30183
30275
+
Ser
GCT
[ENA]
¢þ
>WENV181691253
OGOZ01004056
[OGOZ] human gut metagenome; faeces
1621
1529
-
Ser
GCT
[ENA]
¢þ
>WENV182658484
OJML01000051
[OJML] human gut metagenome; feces
69805
69897
+
Ser
GCT
[ENA]
¢þ
>WENV183070568
OLIS01000056
[OLIS] human gut metagenome; feces
2055
1963
-
Ser
GCT
[ENA]
¢þ
>WENV183640624
OQVL01007512
[OQVL] human gut metagenome; human gut
4110
4202
+
Ser
GCT
[ENA]
¢þ
>WENV183642957
OQVO01000280
[OQVO] human gut metagenome; human gut
11380
11472
+
Ser
GCT
[ENA]
¢þ
Identical group No.10575 (1 seq.)
>W1711413336
MGVR01000074
Elusimicrobiota
Elusimicrobia bacterium RIFOXYD12_FULL_66_9 [MGVR]
266
358
+
Ser
GCT
[ENA]
¡û
Identical group No.10951 (1 seq.)
>W1910727686
MGUQ01000047
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_01_FULL_54_10 [MGUQ]
1447
1538
+
Ser
GCT
[ENA]
¡û
Identical group No.10981 (1 seq.)
>W1711412539
MGUI01000023
Elusimicrobiota
Elusimicrobia bacterium GWD2_63_28 [MGUI]
6426
6333
-
Ser
GCT
[ENA]
¡û
Identical group No.11360 (1 seq.)
>W1910727726
MGUR01000017
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_01_FULL_59_12 [MGUR]
30564
30472
-
Ser
GCT
[ENA]
¡û
Identical group No.11528 (1 seq.)
>W1711413395
MGVS01000105
Elusimicrobiota
Elusimicrobia bacterium RIFOXYD2_FULL_34_15 [MGVS]
1610
1702
+
Ser
GCT
[ENA]
¡û
Identical group No.11682 (1 seq.)
>W1711413326
MGVQ01000113
Elusimicrobiota
Elusimicrobia bacterium RIFOXYC2_FULL_34_12 [MGVQ]
3605
3695
+
Ser
GCT
[ENA]
¡û
Identical group No.11911 (1 seq.)
>W1910727772
MGUS01000069
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_01_FULL_60_11 [MGUS]
5471
5380
-
Ser
GCT
[ENA]
¡û
Identical group No.12528 (5 seq.)
>W1711412172
MGTX01000024
Elusimicrobiota
Elusimicrobia bacterium GWA2_66_18 [MGTX]
52877
52786
-
Ser
GCT
[ENA]
¡û
>W1711412517
MGUH01000102
Elusimicrobiota
Elusimicrobia bacterium GWC2_65_9 [MGUH]
22241
22150
-
Ser
GCT
[ENA]
¡û
>WENV180249549
OBEQ010207392
[OBEQ] groundwater metagenome; groundwater
18025
18116
+
Ser
GCT
[ENA]
¢þ
>WENV180252826
OBEQ010482194
[OBEQ] groundwater metagenome; groundwater
2159
2068
-
Ser
GCT
[ENA]
¢þ
>WENV170555876
CXWL01002829
[CXWL] groundwater metagenome; biofilm material
220
311
+
Ser
GCT
[ENA]
¢þ
Identical group No.12535 (2 seq.)
>W1711412758
MGVA01000002
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA12_FULL_51_18 [MGVA]
416
324
-
Ser
GCT
[ENA]
¡û
>W1711412995
MGVG01000041
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_53_38 [MGVG]
58531
58623
+
Ser
GCT
[ENA]
¡û
Identical group No.13556 (3 seq.)
>W1711411952
MGTS01000018
Elusimicrobiota
Elusimicrobia bacterium GWA2_51_34 [MGTS]
65528
65437
-
Ser
GCT
[ENA]
¡û
>W1711412311
MGUB01000073
Elusimicrobiota
Elusimicrobia bacterium GWC2_51_8 [MGUB]
4159
4250
+
Ser
GCT
[ENA]
¡û
>W1711412584
MGUJ01000082
Elusimicrobiota
Elusimicrobia bacterium GWF2_52_66 [MGUJ]
26584
26675
+
Ser
GCT
[ENA]
¡û
Identical group No.14387 (5 seq.)
>W1711412020
MGTU01000001
Elusimicrobiota
Elusimicrobia bacterium GWA2_61_42 [MGTU]
9900
9991
+
Ser
GCT
[ENA]
¡û
>W1711412427
MGUE01000052
Elusimicrobiota
Elusimicrobia bacterium GWC2_61_25 [MGUE]
9873
9964
+
Ser
GCT
[ENA]
¡û
>W1711581886
MNUR01000062
Elusimicrobiota
Elusimicrobia bacterium CG1_02_56_21 [MNUR]
260
169
-
Ser
GCT
[ENA]
¡û
>WENV183667325
ORJL010637353
[ORJL] groundwater metagenome; groundwater
595
686
+
Ser
GCT
[ENA]
¢þ
>WENV183679893
ORMF010118502
[ORMF] groundwater metagenome; groundwater
527
618
+
Ser
GCT
[ENA]
¢þ
Identical group No.14392 (5 seq.)
>W1711412100
MGTW01000006
Elusimicrobiota
Elusimicrobia bacterium GWA2_64_40 [MGTW]
9052
9143
+
Ser
GCT
[ENA]
¡û
>W1711412238
MGTZ01000042
Elusimicrobiota
Elusimicrobia bacterium GWB2_63_16 [MGTZ]
44034
43943
-
Ser
GCT
[ENA]
¡û
>W1711412289
MGUA01000037
Elusimicrobiota
Elusimicrobia bacterium GWB2_63_22 [MGUA]
74355
74264
-
Ser
GCT
[ENA]
¡û
>W1711412817
MGVB01000094
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA12_FULL_57_11 [MGVB]
8843
8932
+
Ser
GCT
[ENA]
¡û
>W1711413020
MGVH01000040
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_58_8 [MGVH]
1859
1770
-
Ser
GCT
[ENA]
¡û
Identical group No.16812 (2 seq.)
>W1711411989
MGTT01000010
Elusimicrobiota
Elusimicrobia bacterium GWA2_56_46 [MGTT]
23778
23689
-
Ser
GCT
[ENA]
¡û
>W1711412366
MGUC01000033
Elusimicrobiota
Elusimicrobia bacterium GWC2_56_31 [MGUC]
56368
56279
-
Ser
GCT
[ENA]
¡û
Identical group No.18882 (1 seq.)
>W1711583331
MNXB01000027
Elusimicrobiota
Elusimicrobia bacterium CG1_02_37_114 [MNXB]
2511
2602
+
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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