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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Elusimicrobiota
Anticodon = GTC
HIT:
24 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.235246 (3 seq.)
>W1711412479
MGUG01000039
Elusimicrobiota
Elusimicrobia bacterium GWC2_64_44 [MGUG]
886
964
+
Asp
GTC
[ENA]
¡û
>W1711412799
MGVB01000013
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA12_FULL_57_11 [MGVB]
1229
1151
-
Asp
GTC
[ENA]
¡û
>W1711413044
MGVH01000140
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_58_8 [MGVH]
34116
34038
-
Asp
GTC
[ENA]
¡û
Identical group No.235247 (1 seq.)
>W1711412830
MGVC01000001
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_39_19 [MGVC]
33435
33512
+
Asp
GTC
[ENA]
¡û
Identical group No.235600 (4 seq.)
>W1711411913
MGTR01000031
Elusimicrobiota
Elusimicrobia bacterium GWA2_38_7 [MGTR]
5415
5493
+
Asp
GTC
[ENA]
¡û
>W1910727566
MGUN01000013
Elusimicrobiota
Elusimicrobia bacterium RIFCSPHIGHO2_02_FULL_39_36 [MGUN]
11042
10964
-
Asp
GTC
[ENA]
¡û
>W1910727815
MGUU01000007
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_02_FULL_39_32 [MGUU]
11031
10953
-
Asp
GTC
[ENA]
¡û
>W1910727879
MGUW01000008
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_12_FULL_39_28 [MGUW]
11044
10966
-
Asp
GTC
[ENA]
¡û
Identical group No.235823 (7 seq.)
>W1711410440
MGPZ01000061
Unclassified
Deltaproteobacteria bacterium GWD2_55_8 [MGPZ]
5256
5178
-
Asp
GTC
[ENA]
¡û
>W1711412129
MGTW01000065
Elusimicrobiota
Elusimicrobia bacterium GWA2_64_40 [MGTW]
672
594
-
Asp
GTC
[ENA]
¡û
>W1711412223
MGTZ01000013
Elusimicrobiota
Elusimicrobia bacterium GWB2_63_16 [MGTZ]
3231
3153
-
Asp
GTC
[ENA]
¡û
>W1711412260
MGUA01000005
Elusimicrobiota
Elusimicrobia bacterium GWB2_63_22 [MGUA]
150252
150330
+
Asp
GTC
[ENA]
¡û
>W1711412571
MGUI01000065
Elusimicrobiota
Elusimicrobia bacterium GWD2_63_28 [MGUI]
934
1012
+
Asp
GTC
[ENA]
¡û
>W1711412633
MGUK01000084
Elusimicrobiota
Elusimicrobia bacterium GWF2_62_30 [MGUK]
40911
40833
-
Asp
GTC
[ENA]
¡û
>W1711412967
MGVG01000003
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_53_38 [MGVG]
18006
18083
+
Asp
GTC
[ENA]
¡û
Identical group No.237109 (6 seq.)
>W1711412694
MGUY01000021
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA1_FULL_47_7 [MGUY]
16131
16053
-
Asp
GTC
[ENA]
¡û
>W1711412738
MGUZ01000013
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA12_FULL_49_49 [MGUZ]
16299
16221
-
Asp
GTC
[ENA]
¡û
>W1711412925
MGVE01000012
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_47_53 [MGVE]
16280
16202
-
Asp
GTC
[ENA]
¡û
>W1711413080
MGVJ01000095
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB1_FULL_48_9 [MGVJ]
2990
2912
-
Asp
GTC
[ENA]
¡û
>W1711413098
MGVK01000006
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB12_FULL_50_12 [MGVK]
16306
16228
-
Asp
GTC
[ENA]
¡û
>W1711413145
MGVL01000011
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_46_23 [MGVL]
16528
16450
-
Asp
GTC
[ENA]
¡û
Identical group No.237340 (1 seq.)
>W1910727918
MGUX01000018
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_12_FULL_59_9 [MGUX]
453
375
-
Asp
GTC
[ENA]
¡û
Identical group No.237472 (1 seq.)
>W1711413233
MGVN01000206
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_49_7 [MGVN]
438
516
+
Asp
GTC
[ENA]
¡û
Identical group No.238171 (2 seq.)
>W1711412951
MGVF01000051
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_50_26 [MGVF]
3790
3713
-
Asp
GTC
[ENA]
¡û
>W1711413247
MGVO01000005
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_50_12 [MGVO]
3728
3651
-
Asp
GTC
[ENA]
¡û
Identical group No.239290 (1 seq.)
>C151053002
CP009498
Elusimicrobiota
Endomicrobium proavitum Rsa215 [CP009498]
231620
231695
+
Asp
GTC
[Ensembl]
¡û
Identical group No.239659 (1 seq.)
>W1711413373
MGVS01000031
Elusimicrobiota
Elusimicrobia bacterium RIFOXYD2_FULL_34_15 [MGVS]
48946
49023
+
Asp
GTC
[ENA]
¡û
Identical group No.239889 (1 seq.)
>W1711583351
MNXB01000091
Elusimicrobiota
Elusimicrobia bacterium CG1_02_37_114 [MNXB]
11852
11777
-
Asp
GTC
[ENA]
¡û
Identical group No.241450 (2 seq.)
>W1711412139
MGTX01000001
Elusimicrobiota
Elusimicrobia bacterium GWA2_66_18 [MGTX]
2383
2306
-
Asp
GTC
[ENA]
¡û
>W1711412521
MGUH01000104
Elusimicrobiota
Elusimicrobia bacterium GWC2_65_9 [MGUH]
62663
62740
+
Asp
GTC
[ENA]
¡û
Identical group No.242242 (2 seq.)
>C08004661
CP001055
Elusimicrobiota
Elusimicrobium minutum Pei191 [CP001055]
1431534
1431611
+
Asp
GTC
[Ensembl]
¡û
>W09107458
ABIQ01000001
Elusimicrobiota
Elusimicrobium minutum Pei191 [ABIQ]
201789
201712
-
Asp
GTC
[ENA]
¡û
Identical group No.242257 (7 seq.)
>W1710917263
LNVX01000218
Elusimicrobiota
Candidatus Endomicrobium trichonymphae [LNVX]
7992
7917
-
Asp
GTC
[ENA]
¡û
>C08011131
AP009510
Elusimicrobiota
Candidatus Endomicrobium trichonymphae Rs-D17 genomovar Ri2008 [AP009510]
992880
992804
-
Asp
GTC
-
¡û
>WENV170715570
LQAB01005964
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
1168
1243
+
Asp
GTC
[ENA]
¢þ
>WENV170715723
LQAB01012349
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
45338
45413
+
Asp
GTC
[ENA]
¢þ
>WENV170715840
LQAB01017249
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
421
346
-
Asp
GTC
[ENA]
¢þ
>C181002088
AP017459
Elusimicrobiota
Candidatus Endomicrobium trichonymphae Rs-D17 [AP017459]
980508
980432
-
Asp
GTC
-
¡û
>ENV000879
AP009510
Environmental sample from ENV division of INSDC
992880
992801
-
Asp
GTC
[ENA]
Identical group No.248180 (1 seq.)
>W1711412199
MGTY01000063
Elusimicrobiota
Elusimicrobia bacterium GWA2_69_24 [MGTY]
96965
97042
+
Asp
GTC
[ENA]
¡û
Identical group No.259280 (2 seq.)
>W1910727539
MGUM01000045
Elusimicrobiota
Elusimicrobia bacterium RIFCSPHIGHO2_01_FULL_64_10 [MGUM]
143
219
+
Asp
GTC
[ENA]
¡û
>W1910727787
MGUT01000021
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_01_FULL_64_13 [MGUT]
9636
9559
-
Asp
GTC
[ENA]
¡û
Identical group No.261426 (1 seq.)
>W1712038709
NFJD01000001
Elusimicrobiota
Elusimicrobium sp. An273 [NFJD]
269841
269918
+
Asp
GTC
[ENA]
¡û
Identical group No.263809 (1 seq.)
>W1910727723
MGUR01000016
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_01_FULL_59_12 [MGUR]
11418
11495
+
Asp
GTC
[ENA]
¡û
Identical group No.264181 (1 seq.)
>W1711581923
MNUS01000047
Elusimicrobiota
Elusimicrobia bacterium CG1_02_63_36 [MNUS]
4820
4897
+
Asp
GTC
[ENA]
¡û
Identical group No.302827 (3 seq.)
>W1711411967
MGTS01000032
Elusimicrobiota
Elusimicrobia bacterium GWA2_51_34 [MGTS]
37488
37412
-
Asp
GTC
[ENA]
¡û
>W1711412318
MGUB01000098
Elusimicrobiota
Elusimicrobia bacterium GWC2_51_8 [MGUB]
10441
10365
-
Asp
GTC
[ENA]
¡û
>W1711581906
MNUR01000100
Elusimicrobiota
Elusimicrobia bacterium CG1_02_56_21 [MNUR]
9021
9097
+
Asp
GTC
[ENA]
¡û
Identical group No.322652 (3 seq.)
>W1711412034
MGTU01000009
Elusimicrobiota
Elusimicrobia bacterium GWA2_61_42 [MGTU]
130316
130392
+
Asp
GTC
[ENA]
¡û
>W1711412395
MGUE01000011
Elusimicrobiota
Elusimicrobia bacterium GWC2_61_25 [MGUE]
28522
28598
+
Asp
GTC
[ENA]
¡û
>W1910727647
MGUP01000514
Elusimicrobiota
Elusimicrobia bacterium RIFCSPHIGHO2_02_FULL_61_10 [MGUP]
2534
2458
-
Asp
GTC
[ENA]
¡û
Identical group No.361958 (1 seq.)
>W1711413243
MGVN01000246
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_49_7 [MGVN]
23627
23551
-
Asp
GTC
[ENA]
¡û
Identical group No.439041 (1 seq.)
>W1910727760
MGUS01000042
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_01_FULL_60_11 [MGUS]
13821
13745
-
Asp
GTC
[ENA]
¡û
Identical group No.551788 (1 seq.)
>W1730028200
MGVD01000043
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_40_6 [MGVD]
757
831
+
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK