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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Gammaproteobacteria
Anticodon = TAT
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.12691 (69 seq.)
>PL171000008
AM039951
Gammaproteobacteria
Xanthomonas euvesicatoria 85-10 plasmid:pXCV183
31671
31579
-
Ile
TAT
[ENA]
¡û
>PL171001298
CP017191
Gammaproteobacteria
Xanthomonas campestris pv. vesicatoria str. 85-10 plasmid:p_XCV_1
31291
31383
+
Ile
TAT
[ENA]
¡û
>PL171001341
CP018463
Gammaproteobacteria
Xanthomonas euvesicatoria LMG930 plasmid:pLMG930.2
88975
88883
-
Ile
TAT
[ENA]
¡û
>C171051961
CP016830
Gammaproteobacteria
Xanthomonas fragariae [CP016830]
3668266
3668358
+
Ile
TAT
-
¡û
>C171052013
CP016833
Gammaproteobacteria
Xanthomonas fragariae [CP016833]
3668265
3668357
+
Ile
TAT
-
¡û
>C171131578
LT853880
Gammaproteobacteria
Xanthomonas fragariae NBC2815 [LT853880]
697646
697554
-
Ile
TAT
-
¡û
>C171131628
LT853882
Gammaproteobacteria
Xanthomonas fragariae PD885 [LT853882]
599514
599422
-
Ile
TAT
-
¡û
>C171131656
LT853885
Gammaproteobacteria
Xanthomonas fragariae PD5205 [LT853885]
3668282
3668374
+
Ile
TAT
-
¡û
>W141022083
AJRZ01000010
Gammaproteobacteria
Xanthomonas fragariae LMG 25863 [AJRZ]
50502
50410
-
Ile
TAT
[ENA]
¡û
>W1911542029
ORXX01000037
Gammaproteobacteria
Xanthomonas fragariae CFBP 1558 [ORXX]
12209
12117
-
Ile
TAT
[ENA]
¡û
>W1911542077
ORXY01000035
Gammaproteobacteria
Xanthomonas fragariae CFBP 2510 [ORXY]
11594
11502
-
Ile
TAT
[ENA]
¡û
>W1911542167
ORXZ01000254
Gammaproteobacteria
Xanthomonas fragariae CFBP 4784 [ORXZ]
3334
3426
+
Ile
TAT
[ENA]
¡û
>W1911542218
ORYA01000178
Gammaproteobacteria
Xanthomonas fragariae CFBP 4785 [ORYA]
30409
30501
+
Ile
TAT
[ENA]
¡û
>W1911542265
ORYB01000266
Gammaproteobacteria
Xanthomonas fragariae CFBP 4786 [ORYB]
30307
30399
+
Ile
TAT
[ENA]
¡û
>W1911542312
ORYC01000178
Gammaproteobacteria
Xanthomonas fragariae CFBP 5253 [ORYC]
43893
43985
+
Ile
TAT
[ENA]
¡û
>W1911542360
ORYD01000298
Gammaproteobacteria
Xanthomonas fragariae CFBP 5260 [ORYD]
11627
11719
+
Ile
TAT
[ENA]
¡û
>W1911542409
ORYE01000336
Gammaproteobacteria
Xanthomonas fragariae CFBP 5257 [ORYE]
1565
1657
+
Ile
TAT
[ENA]
¡û
>W1911542414
ORYF01000045
Gammaproteobacteria
Xanthomonas fragariae CFBP 6767 [ORYF]
11548
11456
-
Ile
TAT
[ENA]
¡û
>W1911542462
ORYG01000068
Gammaproteobacteria
Xanthomonas fragariae F1-80 [ORYG]
11558
11466
-
Ile
TAT
[ENA]
¡û
>W1911542510
ORYH01000031
Gammaproteobacteria
Xanthomonas fragariae F1-81 [ORYH]
11565
11473
-
Ile
TAT
[ENA]
¡û
>W1911542558
ORYI01000032
Gammaproteobacteria
Xanthomonas fragariae F2-02 [ORYI]
11567
11475
-
Ile
TAT
[ENA]
¡û
>W1911542648
ORYJ01000285
Gammaproteobacteria
Xanthomonas fragariae GBBC 2087 [ORYJ]
30444
30536
+
Ile
TAT
[ENA]
¡û
>W1911542697
ORYK01000264
Gammaproteobacteria
Xanthomonas fragariae GBBC 2088 [ORYK]
12461
12553
+
Ile
TAT
[ENA]
¡û
>W1911542745
ORYL01000297
Gammaproteobacteria
Xanthomonas fragariae ICMP 13779 [ORYL]
4610
4702
+
Ile
TAT
[ENA]
¡û
>W1911542794
ORYM01000325
Gammaproteobacteria
Xanthomonas fragariae ICMP 20572 [ORYM]
11958
12050
+
Ile
TAT
[ENA]
¡û
>W1911542841
ORYN01000282
Gammaproteobacteria
Xanthomonas fragariae ICMP 13780 [ORYN]
10398
10490
+
Ile
TAT
[ENA]
¡û
>W1911542890
ORYO01000312
Gammaproteobacteria
Xanthomonas fragariae ICMP 20573 [ORYO]
30341
30433
+
Ile
TAT
[ENA]
¡û
>W1911542938
ORYP01000294
Gammaproteobacteria
Xanthomonas fragariae ICMP 20575 [ORYP]
206
298
+
Ile
TAT
[ENA]
¡û
>W1911542987
ORYQ01000314
Gammaproteobacteria
Xanthomonas fragariae ICMP 20574 [ORYQ]
4414
4506
+
Ile
TAT
[ENA]
¡û
>W1911542991
ORYR01000062
Gammaproteobacteria
Xanthomonas fragariae ICMP 4019 [ORYR]
11590
11498
-
Ile
TAT
[ENA]
¡û
>W1911543039
ORYS01000061
Gammaproteobacteria
Xanthomonas fragariae ICMP 5813 [ORYS]
11818
11726
-
Ile
TAT
[ENA]
¡û
>W1911543087
ORYT01000075
Gammaproteobacteria
Xanthomonas fragariae ICMP 6269 [ORYT]
1687
1595
-
Ile
TAT
[ENA]
¡û
>W1911543134
ORYU01000073
Gammaproteobacteria
Xanthomonas fragariae ICMP 6277 [ORYU]
11590
11498
-
Ile
TAT
[ENA]
¡û
>W1911543185
ORYV01000050
Gammaproteobacteria
Xanthomonas fragariae ICMP 659 [ORYV]
12090
11998
-
Ile
TAT
[ENA]
¡û
>W1911543248
ORYW01000178
Gammaproteobacteria
Xanthomonas fragariae ICMP 6278 [ORYW]
2433
2525
+
Ile
TAT
[ENA]
¡û
>W1911543282
ORYX01000069
Gammaproteobacteria
Xanthomonas fragariae ICMP 6648 [ORYX]
2508
2600
+
Ile
TAT
[ENA]
¡û
>W1911543331
ORYY01000055
Gammaproteobacteria
Xanthomonas fragariae ICMP 661 [ORYY]
12152
12060
-
Ile
TAT
[ENA]
¡û
>W1911543378
ORYZ01000063
Gammaproteobacteria
Xanthomonas fragariae ICMP 6646 [ORYZ]
11567
11475
-
Ile
TAT
[ENA]
¡û
>W1911543469
ORZA01000192
Gammaproteobacteria
Xanthomonas fragariae JVD-0046 [ORZA]
30543
30635
+
Ile
TAT
[ENA]
¡û
>W1911543518
ORZB01000292
Gammaproteobacteria
Xanthomonas fragariae JVD-0047 [ORZB]
4402
4494
+
Ile
TAT
[ENA]
¡û
>W1911543568
ORZC01000303
Gammaproteobacteria
Xanthomonas fragariae JVD-0051 [ORZC]
9500
9592
+
Ile
TAT
[ENA]
¡û
>W1911543571
ORZD01000040
Gammaproteobacteria
Xanthomonas fragariae NCPPB 2473 [ORZD]
11687
11595
-
Ile
TAT
[ENA]
¡û
>W1911543620
ORZE01000037
Gammaproteobacteria
Xanthomonas fragariae NCPPB 1822 [ORZE]
11691
11599
-
Ile
TAT
[ENA]
¡û
>W1911543689
ORZF01000099
Gammaproteobacteria
Xanthomonas fragariae NBC 2815 [ORZF]
30019
30111
+
Ile
TAT
[ENA]
¡û
>W1911543718
ORZG01000041
Gammaproteobacteria
Xanthomonas fragariae NCPPB 3743 [ORZG]
11710
11618
-
Ile
TAT
[ENA]
¡û
>W1911543811
ORZH01000245
Gammaproteobacteria
Xanthomonas fragariae PD 2659 [ORZH]
29991
30083
+
Ile
TAT
[ENA]
¡û
>W1911543816
ORZI01000041
Gammaproteobacteria
Xanthomonas fragariae PD 2660 [ORZI]
11291
11199
-
Ile
TAT
[ENA]
¡û
>W1911543948
ORZJ01000222
Gammaproteobacteria
Xanthomonas fragariae PD 2905 [ORZJ]
29983
30075
+
Ile
TAT
[ENA]
¡û
>W1911543953
ORZK01000044
Gammaproteobacteria
Xanthomonas fragariae PD 2662 [ORZK]
11289
11197
-
Ile
TAT
[ENA]
¡û
>W1911544003
ORZL01000044
Gammaproteobacteria
Xanthomonas fragariae PD 3145 [ORZL]
11289
11197
-
Ile
TAT
[ENA]
¡û
>W1911544098
ORZM01000201
Gammaproteobacteria
Xanthomonas fragariae PD 3170 [ORZM]
29985
30077
+
Ile
TAT
[ENA]
¡û
>W1911544148
ORZN01000207
Gammaproteobacteria
Xanthomonas fragariae PD 4314 [ORZN]
29982
30074
+
Ile
TAT
[ENA]
¡û
>W1911544198
ORZO01000225
Gammaproteobacteria
Xanthomonas fragariae PD 4634 [ORZO]
30035
30127
+
Ile
TAT
[ENA]
¡û
>W1911544248
ORZP01000202
Gammaproteobacteria
Xanthomonas fragariae PD 4932 [ORZP]
29982
30074
+
Ile
TAT
[ENA]
¡û
>W1911544299
ORZQ01000222
Gammaproteobacteria
Xanthomonas fragariae PD 5205 [ORZQ]
11872
11780
-
Ile
TAT
[ENA]
¡û
>W1911544327
ORZR01000109
Gammaproteobacteria
Xanthomonas fragariae PD 5365 [ORZR]
11885
11793
-
Ile
TAT
[ENA]
¡û
>W1911544398
ORZS01000220
Gammaproteobacteria
Xanthomonas fragariae PD 5482 [ORZS]
29983
30075
+
Ile
TAT
[ENA]
¡û
>W1911544447
ORZT01000206
Gammaproteobacteria
Xanthomonas fragariae PD 6879 [ORZT]
29982
30074
+
Ile
TAT
[ENA]
¡û
>W1911544497
ORZU01000203
Gammaproteobacteria
Xanthomonas fragariae PD 6840 [ORZU]
29987
30079
+
Ile
TAT
[ENA]
¡û
>W1911544548
ORZV01000237
Gammaproteobacteria
Xanthomonas fragariae PD 6880 [ORZV]
11834
11742
-
Ile
TAT
[ENA]
¡û
>W1911544597
ORZW01000216
Gammaproteobacteria
Xanthomonas fragariae PD 6881 [ORZW]
30041
30133
+
Ile
TAT
[ENA]
¡û
>W1911544626
ORZX01000129
Gammaproteobacteria
Xanthomonas fragariae PD 885 [ORZX]
11834
11742
-
Ile
TAT
[ENA]
¡û
>W1911544698
ORZY01000219
Gammaproteobacteria
Xanthomonas fragariae PD 6882 [ORZY]
11833
11741
-
Ile
TAT
[ENA]
¡û
>W1911544747
ORZZ01000234
Gammaproteobacteria
Xanthomonas fragariae XF 61 [ORZZ]
30045
30137
+
Ile
TAT
[ENA]
¡û
>W1511391884
JSZG01000214
Gammaproteobacteria
Xanthomonas euvesicatoria 66b [JSZG]
238
330
+
Ile
TAT
[ENA]
¡û
>W1511546889
JZLN01000048
Gammaproteobacteria
Xanthomonas euvesicatoria 206 [JZLN]
1202
1110
-
Ile
TAT
[ENA]
¡û
>W1511546914
JZLO01000015
Gammaproteobacteria
Xanthomonas euvesicatoria 259 [JZLO]
32072
32164
+
Ile
TAT
[ENA]
¡û
>W1511546985
JZLP01000044
Gammaproteobacteria
Xanthomonas euvesicatoria 315 [JZLP]
70646
70738
+
Ile
TAT
[ENA]
¡û
>W121079086
AKDV01000178
Gammaproteobacteria
Xanthomonas phaseoli pv. manihotis str. IBSBF 2822 [AKDV]
8596
8504
-
Ile
TAT
[ENA]
¡û
Identical group No.13766 (14 seq.)
>W1711360631
MDJT01000177
Gammaproteobacteria
Xanthomonas citri pv. citri [MDJT]
4584
4492
-
Ile
TAT
[ENA]
¡û
>PL171000007
AM039949
Gammaproteobacteria
Xanthomonas euvesicatoria 85-10 plasmid:pXCV19
4401
4309
-
Ile
TAT
[ENA]
¡û
>PL171001299
CP017193
Gammaproteobacteria
Xanthomonas campestris pv. vesicatoria str. 85-10 plasmid:p_XCV_3
2479
2571
+
Ile
TAT
[ENA]
¡û
>WENV170706481
LNAP01003440
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
13530
13622
+
Ile
TAT
[ENA]
¢þ
>W1910693133
MDEG01000062
Gammaproteobacteria
Xanthomonas hyacinthi CFBP1156 [MDEG]
1186
1094
-
Ile
TAT
[ENA]
¡û
>W1910694445
MDSM01000039
Gammaproteobacteria
Xanthomonas arboricola pv. juglandis CFBP 8253 [MDSM]
21283
21375
+
Ile
TAT
[ENA]
¡û
>W1910745937
MIGV01000035
Gammaproteobacteria
Xanthomonas arboricola pv. populi CFBP 3122 [MIGV]
13675
13767
+
Ile
TAT
[ENA]
¡û
>W1810541245
QDID01000001
Gammaproteobacteria
Stenotrophomonas maltophilia SM7059 [QDID]
334202
334294
+
Ile
TAT
[ENA]
¡û
>W1511305305
JPLD01000519
Gammaproteobacteria
Xanthomonas hyacinthi DSM 19077 [JPLD]
1131
1039
-
Ile
TAT
[ENA]
¡û
>W1511541199
JZEI01000001
Gammaproteobacteria
Xanthomonas arboricola CFBP 7651 [JZEI]
2743538
2743446
-
Ile
TAT
[ENA]
¡û
>W1610083904
CCVY01000007
Gammaproteobacteria
Xanthomonas citri pv. citri [CCVY]
17064
16972
-
Ile
TAT
[ENA]
¡û
>W1610527371
JPYD01000361
Gammaproteobacteria
Xanthomonas citri subsp. citri [JPYD]
5564
5656
+
Ile
TAT
[ENA]
¡û
>W1710088766
CCVY01000007
Gammaproteobacteria
Xanthomonas citri pv. citri [CCVY]
17064
16972
-
Ile
TAT
[ENA]
¡û
>W1710628874
JPYD01000361
Gammaproteobacteria
Xanthomonas citri subsp. citri [JPYD]
5564
5656
+
Ile
TAT
[ENA]
¡û
Identical group No.28353 (3 seq.)
>PL171001325
CP018025
Gammaproteobacteria
Alteromonas mediterranea CP48 plasmid:pAMCP48-600
397147
397238
+
Ile
TAT
[ENA]
¡û
>PL171001333
CP018028
Gammaproteobacteria
Alteromonas mediterranea CP49 plasmid:MCP49-600
403757
403848
+
Ile
TAT
[ENA]
¡û
>WENV170132432
CENT01071644
[CENT] marine metagenome genome assembly TARA_007_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
5933
6024
+
Ile
TAT
[ENA]
¢þ
Identical group No.337392 (2 seq.)
>PL173000202
CP023526
Gammaproteobacteria
Cedecea neteri FDAARGOS_392 plasmid:unnamed
22755
22831
+
Ile
TAT
[ENA]
¡û
>W1630003329
BCTL01000033
Gammaproteobacteria
Cedecea neteri NBRC 105707 = ATCC 33855 [BCTL]
46451
46527
+
Ile
TAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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