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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Metagenomic characterization of a wastewater treatment plant (SRP000180)
Anticodon = TCA
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.255 (1 seq.)
>SRA1002303
SRR001308.363473
Metagenomic characterization of a wastewater treatment plant (SRP000180)
169
267
+
SeC
TCA
[SRA]
Identical group No.3917 (1 seq.)
>SRA1001809
SRR001308.66705
Metagenomic characterization of a wastewater treatment plant (SRP000180)
41
136
+
SeC
TCA
[SRA]
Identical group No.236195 (1 seq.)
>SRA1001978
SRR001308.160687
Metagenomic characterization of a wastewater treatment plant (SRP000180)
275
198
-
SeC
TCA
[SRA]
Identical group No.794054 (1 seq.)
>SRA1002111
SRR001308.247047
Metagenomic characterization of a wastewater treatment plant (SRP000180)
74
144
+
SeC
TCA
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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