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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Nitrososphaerota
Anticodon = CGT
HIT:
9 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.299624 (8 seq.)
>A173000362
LN890280
Nitrososphaerota
Candidatus Nitrosotalea devanaterra [LN890280]
1486211
1486138
-
Thr
CGT
-
¡û
>W1930005180
FRFC01000003
Nitrososphaerota
Candidatus Nitrosotalea sinensis Nd2 [FRFC]
414963
415036
+
Thr
CGT
[ENA]
¡û
>W1930018041
MNED01000045
Nitrososphaerota
Thaumarchaeota archaeon 13_1_40CM_38_12 [MNED]
18379
18452
+
Thr
CGT
[ENA]
¡û
>W1930018058
MNFB01000058
Nitrososphaerota
Thaumarchaeota archaeon 13_1_40CM_4_38_7 [MNFB]
9942
10015
+
Thr
CGT
[ENA]
¡û
>W1930018069
MNFZ01000029
Nitrososphaerota
Thaumarchaeota archaeon 13_1_40CM_3_38_6 [MNFZ]
10285
10358
+
Thr
CGT
[ENA]
¡û
>W1930018079
MNGX01000169
Nitrososphaerota
Thaumarchaeota archaeon 13_1_40CM_2_39_7 [MNGX]
24171
24098
-
Thr
CGT
[ENA]
¡û
>W1930018085
MNGZ01000020
Nitrososphaerota
Thaumarchaeota archaeon 13_1_40CM_2_39_13_1 [MNGZ]
1696
1623
-
Thr
CGT
[ENA]
¡û
>W1930018099
MNJS01000045
Nitrososphaerota
Thaumarchaeota archaeon 13_1_20CM_2_39_20 [MNJS]
2406
2333
-
Thr
CGT
[ENA]
¡û
Identical group No.301565 (10 seq.)
>A171000246
CP000866
Nitrososphaerota
Nitrosopumilus maritimus SCM1 [CP000866]
1317848
1317774
-
Thr
CGT
-
¡û
>A171003402
CP003842
Nitrososphaerota
Candidatus Nitrosopumilus koreensis AR1 [CP003842]
1313672
1313599
-
Thr
CGT
-
¡û
>W1910572970
JNVL01000027
Nitrososphaerota
Marine Group I thaumarchaeote SCGC AAA799-E16 [JNVL]
9294
9221
-
Thr
CGT
[ENA]
¡û
>W1910572990
JOKN01000019
Nitrososphaerota
Marine Group I thaumarchaeote SCGC AAA799-N04 [JOKN]
8292
8219
-
Thr
CGT
[ENA]
¡û
>W1910573220
JOSY01000057
Nitrososphaerota
Marine Group I thaumarchaeote SCGC AAA799-D11 [JOSY]
3519
3446
-
Thr
CGT
[ENA]
¡û
>W1910573232
JOSZ01000006
Nitrososphaerota
Marine Group I thaumarchaeote SCGC AAA799-P11 [JOSZ]
101608
101535
-
Thr
CGT
[ENA]
¡û
>W1910573312
JOTD01000069
Nitrososphaerota
Marine Group I thaumarchaeote SCGC RSA3 [JOTD]
3555
3482
-
Thr
CGT
[ENA]
¡û
>W1610000547
ABEO01000001
Nitrososphaerota
Nitrosopumilus maritimus maritimus SCM1 [ABEO]
578464
578388
-
Thr
CGT
[ENA]
¡û
>W1610005400
AJVI01000004
Nitrososphaerota
Nitrosopumilus sp. SJ [AJVI]
29822
29749
-
Thr
CGT
[ENA]
¡û
>W1610005420
AJVJ01000008
Nitrososphaerota
Nitrosopumilus sp. AR [AJVJ]
29827
29754
-
Thr
CGT
[ENA]
¡û
Identical group No.301905 (1 seq.)
>A171006830
CP017922
Nitrososphaerota
Candidatus Nitrosocosmicus hydrocola G61 [CP017922]
140081
140154
+
Thr
CGT
-
¡û
Identical group No.321750 (2 seq.)
>A173000125
CP003843
Nitrososphaerota
Candidatus Nitrosopumilus sediminis AR2 [CP003843]
1334202
1334129
-
Thr
CGT
-
¡û
>W1630000386
AJVJ01000050
Nitrososphaerota
Nitrosopumilus sp. AR [AJVJ]
6396
6469
+
Thr
CGT
[ENA]
¡û
Identical group No.372251 (3 seq.)
>A171006015
CP011070
Nitrososphaerota
Nitrosopumilus adriaticus NF5 [CP011070]
374930
375003
+
Thr
CGT
-
¡û
>W1910126238
BGKI01000006
Nitrososphaerota
Nitrosopumilus zosterae sp. NM25 [BGKI]
34707
34634
-
Thr
CGT
[ENA]
¡û
>W1610617266
LGTD01001056
Nitrososphaerota
Candidatus Nitrosopumilus sp. DDS1 [LGTD]
2175
2248
+
Thr
CGT
[ENA]
¡û
Identical group No.372641 (1 seq.)
>A171005923
CP010868
Nitrososphaerota
Nitrosopumilus piranensis D3C [CP010868]
1653765
1653692
-
Thr
CGT
-
¡û
Identical group No.391920 (2 seq.)
>A173000184
CP007174
Nitrososphaerota
Candidatus Nitrososphaera evergladensis SR1 [CP007174]
2445149
2445222
+
Thr
CGT
-
¡û
>A173000195
CP007536
Nitrososphaerota
Nitrososphaera viennensis EN76 [CP007536]
1306793
1306866
+
Thr
CGT
-
¡û
Identical group No.415946 (1 seq.)
>A173000057
CP002408
Nitrososphaerota
Candidatus Nitrososphaera gargensis Ga9.2 [CP002408]
345764
345837
+
Thr
CGT
-
¡û
Identical group No.440184 (1 seq.)
>A171006045
CP011097
Nitrososphaerota
Candidatus Nitrosotenuis cloacae SAT1 [CP011097]
417833
417906
+
Thr
CGT
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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