tRNA genes clustered and arranged according to each identical group

Nitrososphaerota

Anticodon = TGC

HIT: 8 Group(s).
Download Sequence Representative sequence of each cluster
View ClustalW result
Sort by Identical group No. Sort by the number of tRNAs in the Identical group
Select
 Sequence ID Genome ID
(or Accession No.)		 Phylum/Class
(Sample source for ENV)		 Species Start End Direction AA Anticodon Genome/Seq. Info. Decision
Identical group No.296460 (75 seq.)
>A171004098 CP007026 Nitrososphaerota Candidatus Nitrosopelagicus brevis CN25 [CP007026] 263114 263190 + Ala TGC - ¡û
>WENV180044745 MOXS02032307 [MOXS] marine metagenome; 60 m water sample filtered on 0.2 um supor filter 79 155 + Ala TGC [ENA] ¢þ
>WENV180048185 MPLT02316245 [MPLT] marine metagenome; 70 m water sample filtered on 0.2 um supor filter 749 825 + Ala TGC [ENA] ¢þ
>WENV180048247 MPLT02322753 [MPLT] marine metagenome; 70 m water sample filtered on 0.2 um supor filter 749 825 + Ala TGC [ENA] ¢þ
>WENV180049314 MPLU02051214 [MPLU] marine metagenome; 90 m water sample filtered on 0.2 um supor filter 2376 2452 + Ala TGC [ENA] ¢þ
>WENV180050827 MPLU02173452 [MPLU] marine metagenome; 90 m water sample filtered on 0.2 um supor filter 265 189 - Ala TGC [ENA] ¢þ
>WENV180053579 MPLV02026541 [MPLV] marine metagenome; 100 m water sample filtered on 0.2 um supor filter 12990 12914 - Ala TGC [ENA] ¢þ
>WENV180061763 MPLX02243404 [MPLX] marine metagenome; 120 m water sample filtered on 0.2 um supor filter 13913 13837 - Ala TGC [ENA] ¢þ
>WENV183798405 PVBE010416212 [PVBE] marine metagenome; water 732 656 - Ala TGC [ENA] ¢þ
>WENV183804389 PVBE010925971 [PVBE] marine metagenome; water 749 825 + Ala TGC [ENA] ¢þ
>WENV183804391 PVBE010926221 [PVBE] marine metagenome; water 749 825 + Ala TGC [ENA] ¢þ
>WENV183805043 PVBE010982412 [PVBE] marine metagenome; water 476 552 + Ala TGC [ENA] ¢þ
>WENV170112895 CENF01019012 [CENF] marine metagenome genome assembly TARA_004_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 658 734 + Ala TGC [ENA] ¢þ
>WENV170112896 CENF01019109 [CENF] marine metagenome genome assembly TARA_004_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 190 114 - Ala TGC [ENA] ¢þ
>WENV170153542 CEOF01103990 [CEOF] marine metagenome genome assembly TARA_018_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 190 114 - Ala TGC [ENA] ¢þ
>WENV170196477 CEPK01048393 [CEPK] marine metagenome genome assembly TARA_042_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 7370 7294 - Ala TGC [ENA] ¢þ
>WENV170212792 CEPW01292529 [CEPW] marine metagenome genome assembly TARA_038_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 188 112 - Ala TGC [ENA] ¢þ
>WENV170227707 CEQF01123135 [CEQF] marine metagenome genome assembly TARA_068_MES_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 296 220 - Ala TGC [ENA] ¢þ
>WENV170237730 CEQM01078843 [CEQM] marine metagenome genome assembly TARA_078_DCM_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 724 648 - Ala TGC [ENA] ¢þ
>WENV170240306 CEQN01110578 [CEQN] marine metagenome genome assembly TARA_078_DCM_0.22-0.45 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 411 335 - Ala TGC [ENA] ¢þ
>WENV170241829 CEQO01012727 [CEQO] marine metagenome genome assembly TARA_078_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 366 290 - Ala TGC [ENA] ¢þ
>WENV170248712 CEQQ01176958 [CEQQ] marine metagenome genome assembly TARA_076_DCM_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 421 345 - Ala TGC [ENA] ¢þ
>WENV170252627 CEQU01020137 [CEQU] marine metagenome genome assembly TARA_076_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 322 398 + Ala TGC [ENA] ¢þ
>WENV170255384 CEQW01102366 [CEQW] marine metagenome genome assembly TARA_070_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 325 401 + Ala TGC [ENA] ¢þ
>WENV170255694 CEQX01014808 [CEQX] marine metagenome genome assembly TARA_070_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 1757 1681 - Ala TGC [ENA] ¢þ
>WENV170258112 CEQY01037520 [CEQY] marine metagenome genome assembly TARA_070_SRF_0.22-0.45 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 190 114 - Ala TGC [ENA] ¢þ
>WENV170261020 CERB01033619 [CERB] marine metagenome genome assembly TARA_072_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 1272 1348 + Ala TGC [ENA] ¢þ
>WENV170270315 CERI01076887 [CERI] marine metagenome genome assembly TARA_067_SRF_0.22-0.45 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 2 78 + Ala TGC [ENA] ¢þ
>WENV170271826 CERK01011083 [CERK] marine metagenome genome assembly TARA_066_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 375 451 + Ala TGC [ENA] ¢þ
>WENV170275480 CERM01122752 [CERM] marine metagenome genome assembly TARA_067_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 238 314 + Ala TGC [ENA] ¢þ
>WENV170279270 CERR01009488 [CERR] marine metagenome genome assembly TARA_068_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 1283 1207 - Ala TGC [ENA] ¢þ
>WENV170281766 CERS01089157 [CERS] marine metagenome genome assembly TARA_068_SRF_0.22-0.45 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 367 443 + Ala TGC [ENA] ¢þ
>WENV170283996 CERV01013030 [CERV] marine metagenome genome assembly TARA_068_DCM_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 544 620 + Ala TGC [ENA] ¢þ
>WENV170285852 CERW01028731 [CERW] marine metagenome genome assembly TARA_066_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 194 118 - Ala TGC [ENA] ¢þ
>WENV170285853 CERW01028732 [CERW] marine metagenome genome assembly TARA_066_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 1306 1230 - Ala TGC [ENA] ¢þ
>WENV170293390 CESB01180176 [CESB] marine metagenome genome assembly TARA_078_SRF_0.22-0.45 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 367 443 + Ala TGC [ENA] ¢þ
>WENV170299270 CESG01022657 [CESG] marine metagenome genome assembly TARA_078_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 1077 1001 - Ala TGC [ENA] ¢þ
>WENV170320337 CESQ01334725 [CESQ] marine metagenome genome assembly TARA_100_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 272 348 + Ala TGC [ENA] ¢þ
>WENV170323693 CESS01017234 [CESS] marine metagenome genome assembly TARA_023_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 325 249 - Ala TGC [ENA] ¢þ
>WENV170404952 CEUG01047584 [CEUG] marine metagenome genome assembly TARA_128_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 199 123 - Ala TGC [ENA] ¢þ
>WENV170408542 CEUI01035832 [CEUI] marine metagenome genome assembly TARA_125_MIX_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 687 611 - Ala TGC [ENA] ¢þ
>WENV020916 AACY020560680 Marine microbial communities from Global Ocean Sampling (GOS) 845 923 + Ala TGC [ENA]
>WENV170411838 CEUJ01365921 [CEUJ] marine metagenome genome assembly TARA_125_MIX_0.22-0.45 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 142 66 - Ala TGC [ENA] ¢þ
>WENV170418997 CEUM01086223 [CEUM] marine metagenome genome assembly TARA_123_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 370 446 + Ala TGC [ENA] ¢þ
>WENV170424044 CEUO01059708 [CEUO] marine metagenome genome assembly TARA_124_MIX_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 496 572 + Ala TGC [ENA] ¢þ
>WENV170424944 CEUP01024731 [CEUP] marine metagenome genome assembly TARA_123_MIX_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 304 380 + Ala TGC [ENA] ¢þ
>WENV170441645 CEUV01250012 [CEUV] marine metagenome genome assembly TARA_123_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 91 15 - Ala TGC [ENA] ¢þ
>WENV170444660 CEUX01193588 [CEUX] marine metagenome genome assembly TARA_123_MIX_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 633 557 - Ala TGC [ENA] ¢þ
>WENV170444819 CEUY01004799 [CEUY] marine metagenome genome assembly TARA_123_MIX_0.22-0.45 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 568 644 + Ala TGC [ENA] ¢þ
>WENV170467610 CEVE01200946 [CEVE] marine metagenome genome assembly TARA_124_SRF_0.22-0.45 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 308 232 - Ala TGC [ENA] ¢þ
>WENV170469012 CEVF01078280 [CEVF] marine metagenome genome assembly TARA_124_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 394 470 + Ala TGC [ENA] ¢þ
>WENV170478421 CEVK01047671 [CEVK] marine metagenome genome assembly TARA_149_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 201 125 - Ala TGC [ENA] ¢þ
>WENV170487765 CEVO01089619 [CEVO] marine metagenome genome assembly TARA_152_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 209 285 + Ala TGC [ENA] ¢þ
>WENV170496971 CEVS01121117 [CEVS] marine metagenome genome assembly TARA_151_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 1017 1093 + Ala TGC [ENA] ¢þ
>WENV170500142 CEVT01367709 [CEVT] marine metagenome genome assembly TARA_150_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 157 233 + Ala TGC [ENA] ¢þ
>WENV170500902 CEVU01057635 [CEVU] marine metagenome genome assembly TARA_151_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 405 329 - Ala TGC [ENA] ¢þ
>WENV170505905 CEVW01115613 [CEVW] marine metagenome genome assembly TARA_149_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 190 114 - Ala TGC [ENA] ¢þ
>WENV170513215 CEVZ01386092 [CEVZ] marine metagenome genome assembly TARA_041_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 670 746 + Ala TGC [ENA] ¢þ
>WENV170515222 CEWB01010505 [CEWB] marine metagenome genome assembly TARA_068_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 459 383 - Ala TGC [ENA] ¢þ
>WENV170519444 CEWE01237182 [CEWE] marine metagenome genome assembly TARA_124_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 651 575 - Ala TGC [ENA] ¢þ
>WENV170599956 FUWD010099883 [FUWD] metagenome; unknown 144 68 - Ala TGC [ENA] ¢þ
>WENV170625151 FUWD013192595 [FUWD] metagenome; unknown 2175 2251 + Ala TGC [ENA] ¢þ
>WENV170625153 FUWD013192596 [FUWD] metagenome; unknown 69 145 + Ala TGC [ENA] ¢þ
>WENV170633407 FUWD013395737 [FUWD] metagenome; unknown 2175 2251 + Ala TGC [ENA] ¢þ
>WENV170633409 FUWD013395738 [FUWD] metagenome; unknown 69 145 + Ala TGC [ENA] ¢þ
>WENV170730026 LULG01007693 [LULG] marine metagenome; Red Sea water column Station 169 - depth 200m 1726 1650 - Ala TGC [ENA] ¢þ
>WENV170736682 LULM01017305 [LULM] marine metagenome; Red Sea water column Station 149 - depth 200m 722 798 + Ala TGC [ENA] ¢þ
>WENV170747690 LUMD01000016 [LUMD] marine metagenome; Red Sea water column Station 34 - depth 258m 25195 25119 - Ala TGC [ENA] ¢þ
>WENV170748561 LUME01000006 [LUME] marine metagenome; Red Sea water column Station 34 - depth 200m 23256 23180 - Ala TGC [ENA] ¢þ
>WENV170750080 LUMG01000155 [LUMG] marine metagenome; Red Sea water column Station 34 - depth 50m 707 783 + Ala TGC [ENA] ¢þ
>WENV170756847 LUMP01002410 [LUMP] marine metagenome; Red Sea water column Station 12 - depth 47m 1359 1283 - Ala TGC [ENA] ¢þ
>WENV170761547 LUMV01001281 [LUMV] marine metagenome; Red Sea water column Station 192 - depth 200m 7392 7316 - Ala TGC [ENA] ¢þ
>WENV170930347 MDTG01166420 [MDTG] marine metagenome; seawater 2192 2116 - Ala TGC [ENA] ¢þ
>W1910647541 LXWN01000002 Nitrososphaerota Candidatus Nitrosopelagicus brevis brevis U25 [LXWN] 424201 424277 + Ala TGC [ENA] ¡û
>W1610597538 LFEZ01000007 Nitrososphaerota Thaumarchaeota archaeon casp-thauma4 [LFEZ] 10100 10176 + Ala TGC [ENA] ¡û
Identical group No.300091 (13 seq.)
>A173000008 CP000866 Nitrososphaerota Nitrosopumilus maritimus SCM1 [CP000866] 1363723 1363649 - Ala TGC - ¡û
>A173000116 CP003842 Nitrososphaerota Candidatus Nitrosopumilus koreensis AR1 [CP003842] 1346374 1346300 - Ala TGC - ¡û
>A173000124 CP003843 Nitrososphaerota Candidatus Nitrosopumilus sediminis AR2 [CP003843] 1378824 1378750 - Ala TGC - ¡û
>A173000254 CP010868 Nitrososphaerota Nitrosopumilus piranensis D3C [CP010868] 1685938 1685864 - Ala TGC - ¡û
>A173000259 CP011070 Nitrososphaerota Nitrosopumilus adriaticus NF5 [CP011070] 344227 344301 + Ala TGC - ¡û
>A173000339 CP021324 Nitrososphaerota Candidatus Nitrosomarinus catalina SPOT01 [CP021324] 237415 237489 + Ala TGC - ¡û
>W1630000064 ABEO01000001 Nitrososphaerota Nitrosopumilus maritimus maritimus SCM1 [ABEO] 624339 624265 - Ala TGC [ENA] ¡û
>W1630000366 AJVI01000004 Nitrososphaerota Nitrosopumilus sp. SJ [AJVI] 65485 65411 - Ala TGC [ENA] ¡û
>W1630000371 AJVJ01000009 Nitrososphaerota Nitrosopumilus sp. AR [AJVJ] 669 595 - Ala TGC [ENA] ¡û
>W1630000384 AJVJ01000047 Nitrososphaerota Nitrosopumilus sp. AR [AJVJ] 77497 77571 + Ala TGC [ENA] ¡û
>W1630010225 LFEW01000013 Nitrososphaerota Thaumarchaeota archaeon casp-thauma1 [LFEW] 60880 60806 - Ala TGC [ENA] ¡û
>W1630010233 LFEY01000011 Nitrososphaerota Thaumarchaeota archaeon casp-thauma3 [LFEY] 22874 22948 + Ala TGC [ENA] ¡û
>W1630016211 LQMW01000017 Nitrososphaerota Nitrosopumilus sp. Nsub [LQMW] 195438 195364 - Ala TGC [ENA] ¡û
Identical group No.301941 (3 seq.)
>A179000635 CP012850 Nitrososphaerota Candidatus Nitrosocosmicus oleophilus MY3 [CP012850] 2832927 2833018 + Ala TGC - ¡û
>A179000678 CP017922 Nitrososphaerota Candidatus Nitrosocosmicus hydrocola G61 [CP017922] 1376767 1376676 - Ala TGC - ¡û
>A17A001548 CP017922 Nitrososphaerota Candidatus Nitrosocosmicus hydrocola G61 [CP017922] 1376768 1376677 - Ala TGC - ¡û
Identical group No.391927 (4 seq.)
>A179000477 CP007174 Nitrososphaerota Candidatus Nitrososphaera evergladensis SR1 [CP007174] 625760 625649 - Ala TGC - ¡û
>A179000493 CP007536 Nitrososphaerota Nitrososphaera viennensis EN76 [CP007536] 1419228 1419331 + Ala TGC - ¡û
>A17A001173 CP007174 Nitrososphaerota Candidatus Nitrososphaera evergladensis SR1 [CP007174] 625760 625649 - Ala TGC - ¡û
>A17A001199 CP007536 Nitrososphaerota Nitrososphaera viennensis EN76 [CP007536] 1419228 1419331 + Ala TGC - ¡û
Identical group No.398589 (4 seq.)
>At0058 DP000238 Nitrososphaerota Cenarchaeum symbiosum [DP000238] 252238 252314 + Ala TGC [Ensembl] ¡û
>ENV004175 DQ397587 Environmental sample from ENV division of INSDC 20775 20851 + Ala TGC [ENA]
>ENV004206 DQ397828 Environmental sample from ENV division of INSDC 5033 5109 + Ala TGC [ENA]
>ENV004219 DQ397844 Environmental sample from ENV division of INSDC 23621 23697 + Ala TGC [ENA]
Identical group No.415939 (2 seq.)
>A17A000506 CP002408 Nitrososphaerota Candidatus Nitrososphaera gargensis Ga9.2 [CP002408] 2357379 2357481 + Ala TGC - ¡û
>A179000209 CP002408 Nitrososphaerota Candidatus Nitrososphaera gargensis Ga9.2 [CP002408] 2357379 2357480 + Ala TGC - ¡û
Identical group No.697081 (4 seq.)
>A171007483 LN890280 Nitrososphaerota Candidatus Nitrosotalea devanaterra [LN890280] 1518576 1518505 - Ala TGC - ¡û
>WENV180274936 OBHP01000449 [OBHP] metagenome; freshwater sediment 96 21 - Ala TGC [ENA] ¢þ
>W1910285428 FRFC01000003 Nitrososphaerota Candidatus Nitrosotalea sinensis Nd2 [FRFC] 359131 359203 + Ala TGC [ENA] ¡û
>W1910402082 FUYK01000008 Nitrososphaerota Candidatus Nitrosotalea bavarica SbT1 [FUYK] 49212 49284 + Ala TGC [ENA] ¡û
Identical group No.735727 (2 seq.)
>A171006044 CP011097 Nitrososphaerota Candidatus Nitrosotenuis cloacae SAT1 [CP011097] 391784 391856 + Ala TGC - ¡û
>WENV180041961 LLBZ010809141 [LLBZ] soil metagenome; soil from tomato rhizosphere 591 517 - Ala TGC [ENA] ¢þ
Select
 Sequence ID Genome ID
(or Accession No.)		 Phylum/Class
(Sample source for ENV)		 Species Start End Direction AA Anticodon Genome/Seq. Info. Decision
Download Sequence Representative sequence of each cluster
View ClustalW result

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