This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Nitrososphaerota
Anticodon = TGG
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.259864 (2 seq.)
>A171004249
CP007174
Nitrososphaerota
Candidatus Nitrososphaera evergladensis SR1 [CP007174]
814465
814540
+
Pro
TGG
-
¡û
>A171004329
CP007536
Nitrososphaerota
Nitrososphaera viennensis EN76 [CP007536]
2292352
2292426
+
Pro
TGG
-
¡û
Identical group No.271178 (3 seq.)
>A173000120
CP003843
Nitrososphaerota
Candidatus Nitrosopumilus sediminis AR2 [CP003843]
519351
519427
+
Pro
TGG
-
¡û
>W1630000380
AJVJ01000041
Nitrososphaerota
Nitrosopumilus sp. AR [AJVJ]
48034
48110
+
Pro
TGG
[ENA]
¡û
>W1630010284
LFLC01000010
Nitrososphaerota
Nitrosopumilus sp. LS_AOA [LFLC]
32941
32865
-
Pro
TGG
[ENA]
¡û
Identical group No.371838 (4 seq.)
>A173000263
CP011070
Nitrososphaerota
Nitrosopumilus adriaticus NF5 [CP011070]
1247700
1247624
-
Pro
TGG
-
¡û
>A173000343
CP021324
Nitrososphaerota
Candidatus Nitrosomarinus catalina SPOT01 [CP021324]
852179
852103
-
Pro
TGG
-
¡û
>W1630010758
LGTD01000662
Nitrososphaerota
Candidatus Nitrosopumilus sp. DDS1 [LGTD]
42
118
+
Pro
TGG
[ENA]
¡û
>W1630016209
LQMW01000011
Nitrososphaerota
Nitrosopumilus sp. Nsub [LQMW]
3513
3589
+
Pro
TGG
[ENA]
¡û
Identical group No.440185 (1 seq.)
>A171006056
CP011097
Nitrososphaerota
Candidatus Nitrosotenuis cloacae SAT1 [CP011097]
1081457
1081383
-
Pro
TGG
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK