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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Synergistota
Anticodon = AAG
HIT:
8 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.119772 (3 seq.)
>W1711629562
MPPC01000017
Synergistota
Aminobacterium sp. EBM-42 [MPPC]
70519
70605
+
Leu
AAG
[ENA]
¡û
>WENV170716683
LSQX01007843
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
78992
78906
-
Leu
AAG
[ENA]
¢þ
>C10100303
CP001997
Synergistota
Aminobacterium colombiense DSM 12261 [CP001997]
582387
582473
+
Leu
AAG
[Ensembl]
¡û
Identical group No.127954 (4 seq.)
>WENV180797760
ODJB01114762
[ODJB] human metagenome; G_DNA_Supragingival plaque
464
550
+
Leu
AAG
[ENA]
¢þ
>WENV180809396
ODJK01015334
[ODJK] human metagenome; G_DNA_Subgingival plaque
1698
1784
+
Leu
AAG
[ENA]
¢þ
>WENV180952326
ODUH01243857
[ODUH] human metagenome; G_DNA_Subgingival plaque
105
19
-
Leu
AAG
[ENA]
¢þ
>C161104021
FP929056
Synergistota
Fretibacterium fastidiosum SGP1 [FP929056]
597932
598018
+
Leu
AAG
-
¡û
Identical group No.132346 (4 seq.)
>W1711137553
LVBO01000034
Synergistota
Synergistales bacterium Syner_01 [LVBO]
1422
1508
+
Leu
AAG
[ENA]
¡û
>WENV170717347
LSQX01032588
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
171
257
+
Leu
AAG
[ENA]
¢þ
>WENV170721950
LSQX01210618
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
3594
3508
-
Leu
AAG
[ENA]
¢þ
>W1610948673
LVBO01000034
Synergistota
Synergistales bacterium Syner_01 [LVBO]
1422
1508
+
Leu
AAG
[ENA]
¡û
Identical group No.151456 (1 seq.)
>W141279017
JAFZ01000002
Synergistota
Aminobacterium mobile DSM 12262 [JAFZ]
256950
256864
-
Leu
AAG
[ENA]
¡û
Identical group No.167224 (5 seq.)
>WENV183711847
PDWI01082242
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
827
742
-
Leu
AAG
[ENA]
¢þ
>WENV183717233
PDWJ01000610
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
2773
2688
-
Leu
AAG
[ENA]
¢þ
>W09108907
ABTR01000002
Synergistota
Dethiosulfovibrio peptidovorans DSM 11002 [ABTR]
161186
161101
-
Leu
AAG
[ENA]
¡û
>W1710608713
FXBB01000031
Synergistota
Dethiosulfovibrio salsuginis [FXBB]
14537
14622
+
Leu
AAG
[ENA]
¡û
>W1710608715
FXBB01000044
Synergistota
Dethiosulfovibrio salsuginis [FXBB]
17088
17173
+
Leu
AAG
[ENA]
¡û
Identical group No.199244 (2 seq.)
>W141146857
AWWC01000018
Synergistota
Jonquetella sp. BV3C21 [AWWC]
131631
131547
-
Leu
AAG
[ENA]
¡û
>W09132959
ACOO02000017
Synergistota
Jonquetella anthropi E3_33 E1 [ACOO]
132006
131922
-
Leu
AAG
[ENA]
¡û
Identical group No.211052 (3 seq.)
>W1711744520
MUHX01000055
Synergistota
Pyramidobacter sp. C12-8 [MUHX]
1924
1840
-
Leu
AAG
[ENA]
¡û
>WENV181989354
OHAO01007182
[OHAO] human gut metagenome; faeces
88
4
-
Leu
AAG
[ENA]
¢þ
>WENV183763936
PPYE01311249
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
16220
16136
-
Leu
AAG
[ENA]
¢þ
Identical group No.215921 (1 seq.)
>W121017505
AGRU01000003
Synergistota
Jonquetella anthropi DSM 22815 [AGRU]
136638
136554
-
Leu
AAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK