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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Synergistota
Anticodon = CCT
HIT:
21 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.301519 (16 seq.)
>W1711137593
LVBP01000229
Synergistota
Synergistales bacterium Syner_02 [LVBP]
11706
11782
+
Arg
CCT
[ENA]
¡û
>W1711318179
MAYB01000004
Alphaproteobacteria
Nitratireductor aquibiodomus [MAYB]
607474
607398
-
Arg
CCT
[ENA]
¡û
>W131046298
AMSI01000008
Alphaproteobacteria
Nitratireductor indicus C115 [AMSI]
118992
118916
-
Arg
CCT
[ENA]
¡û
>W141229366
BAMP01000026
Alphaproteobacteria
Nitratireductor aquibiodomus JCM 21793 [BAMP]
43115
43039
-
Arg
CCT
[ENA]
¡û
>WENV170853517
MDTA01171197
[MDTA] marine metagenome; seawater
4574
4650
+
Arg
CCT
[ENA]
¢þ
>WENV170964008
MRWG01001916
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
10393
10469
+
Arg
CCT
[ENA]
¢þ
>C181176128
CP029208
Alphaproteobacteria
Nitratireductor sp. OM-1 [CP029208]
759417
759493
+
Arg
CCT
-
¡û
>W141712282
JMQM01000002
Alphaproteobacteria
Nitratireductor basaltis [JMQM]
662797
662873
+
Arg
CCT
[ENA]
¡û
>W1910859313
NBYO01000001
Alphaproteobacteria
Notoacmeibacter marinus XMTR2A4 [NBYO]
1489701
1489625
-
Arg
CCT
[ENA]
¡û
>W1810592075
QFWV01000001
Alphaproteobacteria
Oceaniradius stylonematis StC1 [QFWV]
370457
370381
-
Arg
CCT
[ENA]
¡û
>W1810625988
QHKP01000004
Alphaproteobacteria
Notoacmeibacter marinus HMA008 [QHKP]
87567
87643
+
Arg
CCT
[ENA]
¡û
>W121071503
AJXZ01000055
Alphaproteobacteria
Nitratireductor aquibiodomus RA22 [AJXZ]
31181
31105
-
Arg
CCT
[ENA]
¡û
>W1610948713
LVBP01000229
Synergistota
Synergistales bacterium Syner_02 [LVBP]
11706
11782
+
Arg
CCT
[ENA]
¡û
>W1611061597
MAYB01000004
Alphaproteobacteria
Nitratireductor aquibiodomus [MAYB]
607474
607398
-
Arg
CCT
[ENA]
¡û
>W1710535288
FNSL01000001
Alphaproteobacteria
Nitratireductor aquibiodomus ES.061 [FNSL]
2052562
2052638
+
Arg
CCT
[ENA]
¡û
>W1710574065
FOXZ01000004
Alphaproteobacteria
Nitratireductor indicus [FOXZ]
133279
133355
+
Arg
CCT
[ENA]
¡û
Identical group No.302263 (5 seq.)
>WENV170676934
LDZS01003235
[LDZS] terrestrial metagenome; oil reservoir sample K3
9200
9276
+
Arg
CCT
[ENA]
¢þ
>C121008078
CP003198
Synergistota
Acetomicrobium mobile DSM 13181 [CP003198]
895986
895910
-
Arg
CCT
[Ensembl]
¡û
>W1610613302
LGFQ01000055
Synergistota
Synergistales bacterium 54_24 [LGFQ]
9200
9276
+
Arg
CCT
[ENA]
¡û
>W1710594052
FSQZ01000001
Synergistota
Acetomicrobium flavidum [FSQZ]
191022
191098
+
Arg
CCT
[ENA]
¡û
>W1710734509
LGFQ01000055
Synergistota
Synergistales bacterium 54_24 [LGFQ]
9200
9276
+
Arg
CCT
[ENA]
¡û
Identical group No.304068 (1 seq.)
>W1712039371
NFJQ01000007
Synergistota
Cloacibacillus sp. An23 [NFJQ]
144622
144698
+
Arg
CCT
[ENA]
¡û
Identical group No.307532 (6 seq.)
>W141701193
JMKI01000009
Synergistota
Synergistes jonesii [JMKI]
1177
1101
-
Arg
CCT
[ENA]
¡û
>W1710629236
JPZQ01000010
Synergistota
Synergistes jonesii [JPZQ]
286
210
-
Arg
CCT
[ENA]
¡û
>W1710629280
JPZR01000009
Synergistota
Synergistes jonesii [JPZR]
287
211
-
Arg
CCT
[ENA]
¡û
>W1710629322
JPZS01000008
Synergistota
Synergistes jonesii [JPZS]
286
210
-
Arg
CCT
[ENA]
¡û
>W1710631838
JQEK01000028
Synergistota
Synergistes jonesii [JQEK]
16020
16096
+
Arg
CCT
[ENA]
¡û
>W1710631870
JQEL01000009
Synergistota
Synergistes jonesii [JQEL]
286
210
-
Arg
CCT
[ENA]
¡û
Identical group No.314430 (8 seq.)
>W1711744501
MUHX01000020
Synergistota
Pyramidobacter sp. C12-8 [MUHX]
22634
22558
-
Arg
CCT
[ENA]
¡û
>WENV181638736
OGNC01011095
[OGNC] metagenome; Human gut stool
1445
1369
-
Arg
CCT
[ENA]
¢þ
>WENV181973449
OHAA01049112
[OHAA] human gut metagenome; faeces
303
227
-
Arg
CCT
[ENA]
¢þ
>WENV181989134
OHAO01003472
[OHAO] human gut metagenome; faeces
2916
2992
+
Arg
CCT
[ENA]
¢þ
>WENV183484249
OMFO01007227
[OMFO] human gut metagenome; feces
220
296
+
Arg
CCT
[ENA]
¢þ
>WENV183763976
PPYE01311392
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
9302
9378
+
Arg
CCT
[ENA]
¢þ
>W10113026
ADFP01000055
Synergistota
Pyramidobacter piscolens W5455 [ADFP]
2977
3053
+
Arg
CCT
[ENA]
¡û
>W11116253
ADFP01000055
Synergistota
Pyramidobacter piscolens W5455 [ADFP]
2977
3053
+
Arg
CCT
[ENA]
¡û
Identical group No.330349 (10 seq.)
>C171050522
CP016757
Synergistota
Cloacibacillus porcorum CL-84 [CP016757]
110335
110411
+
Arg
CCT
-
¡û
>WENV181614355
OGLV01048918
[OGLV] metagenome; Human gut stool
610
534
-
Arg
CCT
[ENA]
¢þ
>WENV181908770
OGYB01000617
[OGYB] human gut metagenome; faeces
9900
9824
-
Arg
CCT
[ENA]
¢þ
>WENV181915470
OGYF01007516
[OGYF] human gut metagenome; faeces
2253
2329
+
Arg
CCT
[ENA]
¢þ
>WENV182221023
OHQS01032154
[OHQS] human gut metagenome; feces
19
95
+
Arg
CCT
[ENA]
¢þ
>WENV182274880
OHUK01019380
[OHUK] human gut metagenome; feces
832
756
-
Arg
CCT
[ENA]
¢þ
>WENV182538201
OIXH01051492
[OIXH] human gut metagenome; faeces
129
53
-
Arg
CCT
[ENA]
¢þ
>WENV183039532
OLGB01008551
[OLGB] human gut metagenome; faeces
5453
5377
-
Arg
CCT
[ENA]
¢þ
>W141452022
JFBR01000001
Synergistota
Cloacibacillus evryensis DSM 19522 [JFBR]
44047
43971
-
Arg
CCT
[ENA]
¡û
>W121000456
ACUH01000002
Synergistota
Synergistes sp. 3_1_syn1 [ACUH]
10149
10073
-
Arg
CCT
[ENA]
¡û
Identical group No.352497 (1 seq.)
>W11138606
AEIV01000002
Synergistota
Aminomonas paucivorans DSM 12260 [AEIV]
74646
74722
+
Arg
CCT
[ENA]
¡û
Identical group No.370679 (6 seq.)
>WENV170690154
LFRM01327453
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
642
566
-
Arg
CCT
[ENA]
¢þ
>WENV170724396
LSQX01303912
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
7708
7784
+
Arg
CCT
[ENA]
¢þ
>WENV170725306
LSQX01338052
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
815
739
-
Arg
CCT
[ENA]
¢þ
>WENV170727099
LSQX01404838
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
8996
9072
+
Arg
CCT
[ENA]
¢þ
>W09126602
ACJX01000116
Synergistota
Acetomicrobium hydrogeniformans ATCC BAA-1850 [ACJX]
118
42
-
Arg
CCT
[ENA]
¡û
>W1710530829
FNPD01000003
Synergistota
Acetomicrobium thermoterrenum DSM 13490 [FNPD]
186732
186656
-
Arg
CCT
[ENA]
¡û
Identical group No.381606 (2 seq.)
>W1711137636
LVBQ01000140
Synergistota
Synergistales bacterium Syner_03 [LVBQ]
6026
5950
-
Arg
CCT
[ENA]
¡û
>W1610948756
LVBQ01000140
Synergistota
Synergistales bacterium Syner_03 [LVBQ]
6026
5950
-
Arg
CCT
[ENA]
¡û
Identical group No.402117 (1 seq.)
>W09126615
ACJX01000145
Synergistota
Acetomicrobium hydrogeniformans ATCC BAA-1850 [ACJX]
321
245
-
Arg
CCT
[ENA]
¡û
Identical group No.417202 (4 seq.)
>WENV181409359
OGCI01000124
[OGCI] hot springs metagenome; Hot spring water
26036
25960
-
Arg
CCT
[ENA]
¢þ
>W09110155
ABUW01000007
Synergistota
Thermanaerovibrio acidaminovorans DSM 6589 [ABUW]
69220
69296
+
Arg
CCT
[ENA]
¡û
>C10113015
CP001818
Synergistota
Thermanaerovibrio acidaminovorans DSM 6589 [CP001818]
1033275
1033199
-
Arg
CCT
[Ensembl]
¡û
>W121031627
AHGV01000001
Synergistota
Thermanaerovibrio velox DSM 12556 [AHGV]
857197
857273
+
Arg
CCT
[ENA]
¡û
Identical group No.422778 (2 seq.)
>W141278978
JAFY01000007
Synergistota
Aminiphilus circumscriptus DSM 16581 [JAFY]
838438
838362
-
Arg
CCT
[ENA]
¡û
>W1610945975
LUYG01000159
Euryarchaeota
Methanosarcinales archaeon Methan_03 [LUYG]
3289
3213
-
Arg
CCT
[ENA]
¡û
Identical group No.461168 (9 seq.)
>WENV181230110
OFEK01000298
[OFEK] activated sludge metagenome; Anaerobic digester
4839
4914
+
Arg
CCT
[ENA]
¢þ
>WENV183514356
OMKS01017006
[OMKS] sediment metagenome; hot spring sediment
3017
3092
+
Arg
CCT
[ENA]
¢þ
>WENV170678342
LDZT01014015
[LDZT] terrestrial metagenome; oil reservoir sample SB1
76
1
-
Arg
CCT
[ENA]
¢þ
>WENV170719649
LSQX01121978
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
56469
56544
+
Arg
CCT
[ENA]
¢þ
>WENV170967223
MTKW01000525
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
113534
113609
+
Arg
CCT
[ENA]
¢þ
>WENV170971699
MTKX01009951
[MTKX] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
9701
9626
-
Arg
CCT
[ENA]
¢þ
>WENV170978114
MTKZ01041200
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
3241
3316
+
Arg
CCT
[ENA]
¢þ
>W1610613694
LGGE01000008
Synergistota
Synergistales bacterium 57_84 [LGGE]
76
1
-
Arg
CCT
[ENA]
¡û
>W1710734847
LGGE01000008
Synergistota
Synergistales bacterium 57_84 [LGGE]
76
1
-
Arg
CCT
[ENA]
¡û
Identical group No.490527 (3 seq.)
>W1711629549
MPPC01000010
Synergistota
Aminobacterium sp. EBM-42 [MPPC]
225364
225439
+
Arg
CCT
[ENA]
¡û
>WENV170719193
LSQX01104951
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
265137
265212
+
Arg
CCT
[ENA]
¢þ
>C10100327
CP001997
Synergistota
Aminobacterium colombiense DSM 12261 [CP001997]
1004754
1004679
-
Arg
CCT
[Ensembl]
¡û
Identical group No.500427 (5 seq.)
>WENV183515202
OMKS01050609
[OMKS] sediment metagenome; hot spring sediment
972
1047
+
Arg
CCT
[ENA]
¢þ
>WENV170679065
LDZU01006955
[LDZU] terrestrial metagenome; oil reservoir sample SB2
1964
1889
-
Arg
CCT
[ENA]
¢þ
>C121005684
CP003096
Synergistota
Thermovirga lienii DSM 17291 [CP003096]
983255
983330
+
Arg
CCT
[Ensembl]
¡û
>W1610614512
LGHG01000206
Synergistota
Synergistales bacterium 54_9 [LGHG]
1964
1889
-
Arg
CCT
[ENA]
¡û
>W1710735493
LGHG01000206
Synergistota
Synergistales bacterium 54_9 [LGHG]
1964
1889
-
Arg
CCT
[ENA]
¡û
Identical group No.530886 (3 seq.)
>WENV180952122
ODUH01130412
[ODUH] human metagenome; G_DNA_Subgingival plaque
269
194
-
Arg
CCT
[ENA]
¢þ
>WENV181081345
OEAS01182335
[OEAS] human metagenome; G_DNA_Supragingival plaque
250
325
+
Arg
CCT
[ENA]
¢þ
>C161104046
FP929056
Synergistota
Fretibacterium fastidiosum SGP1 [FP929056]
1053152
1053077
-
Arg
CCT
-
¡û
Identical group No.551486 (3 seq.)
>W1711137569
LVBO01000398
Synergistota
Synergistales bacterium Syner_01 [LVBO]
759
684
-
Arg
CCT
[ENA]
¡û
>WENV180096734
MTBK01144849
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
67451
67526
+
Arg
CCT
[ENA]
¢þ
>W1610948689
LVBO01000398
Synergistota
Synergistales bacterium Syner_01 [LVBO]
759
684
-
Arg
CCT
[ENA]
¡û
Identical group No.554137 (3 seq.)
>W141146874
AWWC01000028
Synergistota
Jonquetella sp. BV3C21 [AWWC]
48553
48478
-
Arg
CCT
[ENA]
¡û
>W09132962
ACOO02000018
Synergistota
Jonquetella anthropi E3_33 E1 [ACOO]
28855
28930
+
Arg
CCT
[ENA]
¡û
>W121017486
AGRU01000003
Synergistota
Jonquetella anthropi DSM 22815 [AGRU]
189850
189925
+
Arg
CCT
[ENA]
¡û
Identical group No.559287 (6 seq.)
>WENV183713273
PDWI01131848
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1471
1396
-
Arg
CCT
[ENA]
¢þ
>WENV183717645
PDWJ01001296
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
23752
23827
+
Arg
CCT
[ENA]
¢þ
>WENV170655653
JTFN01055100
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
682
607
-
Arg
CCT
[ENA]
¢þ
>WENV170656707
JTFO01035909
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
1566
1491
-
Arg
CCT
[ENA]
¢þ
>W09108910
ABTR01000003
Synergistota
Dethiosulfovibrio peptidovorans DSM 11002 [ABTR]
114239
114314
+
Arg
CCT
[ENA]
¡û
>W1710608677
FXBB01000001
Synergistota
Dethiosulfovibrio salsuginis [FXBB]
109326
109251
-
Arg
CCT
[ENA]
¡û
Identical group No.589565 (5 seq.)
>W1711137587
LVBP01000145
Synergistota
Synergistales bacterium Syner_02 [LVBP]
17501
17576
+
Arg
CCT
[ENA]
¡û
>WENV181231824
OFEK01071014
[OFEK] activated sludge metagenome; Anaerobic digester
584
659
+
Arg
CCT
[ENA]
¢þ
>WENV170671582
LAHU01095154
[LAHU] activated sludge metagenome; sample C-0; Zero hour mixed sludge faded in reactor as a methanogenic microbial inoculum from
211
136
-
Arg
CCT
[ENA]
¢þ
>WENV170724719
LSQX01316244
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
7198
7123
-
Arg
CCT
[ENA]
¢þ
>W1610948707
LVBP01000145
Synergistota
Synergistales bacterium Syner_02 [LVBP]
17501
17576
+
Arg
CCT
[ENA]
¡û
Identical group No.642158 (1 seq.)
>W141278996
JAFZ01000001
Synergistota
Aminobacterium mobile DSM 12262 [JAFZ]
1200954
1201029
+
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK