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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Synergistota
Anticodon = GAC
HIT:
17 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.658521 (21 seq.)
>W131157320
AQRZ01000032
Synergistota
Synergistetes bacterium JGI 0000079-D21 [AQRZ]
11301
11375
+
Val
GAC
[ENA]
¡û
>WENV181230568
OFEK01001604
[OFEK] activated sludge metagenome; Anaerobic digester
2842
2768
-
Val
GAC
[ENA]
¢þ
>WENV170676985
LDZS01003909
[LDZS] terrestrial metagenome; oil reservoir sample K3
2036
1962
-
Val
GAC
[ENA]
¢þ
>WENV170677146
LDZT01003249
[LDZT] terrestrial metagenome; oil reservoir sample SB1
11459
11385
-
Val
GAC
[ENA]
¢þ
>WENV170678356
LDZT01014035
[LDZT] terrestrial metagenome; oil reservoir sample SB1
20157
20083
-
Val
GAC
[ENA]
¢þ
>WENV170678618
LDZU01003377
[LDZU] terrestrial metagenome; oil reservoir sample SB2
17459
17385
-
Val
GAC
[ENA]
¢þ
>WENV170679037
LDZU01006758
[LDZU] terrestrial metagenome; oil reservoir sample SB2
11459
11385
-
Val
GAC
[ENA]
¢þ
>WENV170967233
MTKW01000525
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
238575
238501
-
Val
GAC
[ENA]
¢þ
>WENV170971384
MTKX01004560
[MTKX] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
89157
89083
-
Val
GAC
[ENA]
¢þ
>WENV170976203
MTKZ01005715
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
11938
12012
+
Val
GAC
[ENA]
¢þ
>C121005688
CP003096
Synergistota
Thermovirga lienii DSM 17291 [CP003096]
1005882
1005956
+
Val
GAC
[Ensembl]
¡û
>W1610613347
LGFS01000071
Synergistota
Thermovirga lienii [LGFS]
2036
1962
-
Val
GAC
[ENA]
¡û
>W1610613607
LGGB01000001
Synergistota
Synergistales bacterium 53_16 [LGGB]
11459
11385
-
Val
GAC
[ENA]
¡û
>W1610613708
LGGE01000028
Synergistota
Synergistales bacterium 57_84 [LGGE]
20157
20083
-
Val
GAC
[ENA]
¡û
>W1610614156
LGGV01000002
Synergistota
Synergistales bacterium 58_81 [LGGV]
17459
17385
-
Val
GAC
[ENA]
¡û
>W1610614484
LGHG01000009
Synergistota
Synergistales bacterium 54_9 [LGHG]
11459
11385
-
Val
GAC
[ENA]
¡û
>W1710734554
LGFS01000071
Synergistota
Thermovirga lienii [LGFS]
2036
1962
-
Val
GAC
[ENA]
¡û
>W1710734779
LGGB01000001
Synergistota
Synergistales bacterium 53_16 [LGGB]
11459
11385
-
Val
GAC
[ENA]
¡û
>W1710734861
LGGE01000028
Synergistota
Synergistales bacterium 57_84 [LGGE]
20157
20083
-
Val
GAC
[ENA]
¡û
>W1710735239
LGGV01000002
Synergistota
Synergistales bacterium 58_81 [LGGV]
17459
17385
-
Val
GAC
[ENA]
¡û
>W1710735465
LGHG01000009
Synergistota
Synergistales bacterium 54_9 [LGHG]
11459
11385
-
Val
GAC
[ENA]
¡û
Identical group No.658577 (8 seq.)
>WENV170562538
CZCB01003423
[CZCB] anaerobic digester metagenome; anaerobic digester
3154
3228
+
Val
GAC
[ENA]
¢þ
>WENV170684832
LFRM01060381
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
861
787
-
Val
GAC
[ENA]
¢þ
>WENV170725691
LSQX01352479
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
5761
5687
-
Val
GAC
[ENA]
¢þ
>W09126616
ACJX01000146
Synergistota
Acetomicrobium hydrogeniformans ATCC BAA-1850 [ACJX]
359
285
-
Val
GAC
[ENA]
¡û
>WENV170967714
MTKW01002970
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
2989
3063
+
Val
GAC
[ENA]
¢þ
>C121008058
CP003198
Synergistota
Acetomicrobium mobile DSM 13181 [CP003198]
687056
687130
+
Val
GAC
[Ensembl]
¡û
>W1710530812
FNPD01000001
Synergistota
Acetomicrobium thermoterrenum DSM 13490 [FNPD]
287855
287929
+
Val
GAC
[ENA]
¡û
>W1710594087
FSQZ01000001
Synergistota
Acetomicrobium flavidum [FSQZ]
385195
385121
-
Val
GAC
[ENA]
¡û
Identical group No.674600 (11 seq.)
>W1711137619
LVBQ01000036
Synergistota
Synergistales bacterium Syner_03 [LVBQ]
65373
65447
+
Val
GAC
[ENA]
¡û
>W1712039349
NFJQ01000001
Synergistota
Cloacibacillus sp. An23 [NFJQ]
214936
214862
-
Val
GAC
[ENA]
¡û
>WENV180224795
OBBK01038446
[OBBK] human gut metagenome; human gut
143
217
+
Val
GAC
[ENA]
¢þ
>WENV181865515
OGWU01035404
[OGWU] human gut metagenome; faeces
590
516
-
Val
GAC
[ENA]
¢þ
>W141701187
JMKI01000002
Synergistota
Synergistes jonesii [JMKI]
21799
21873
+
Val
GAC
[ENA]
¡û
>W1610948739
LVBQ01000036
Synergistota
Synergistales bacterium Syner_03 [LVBQ]
65373
65447
+
Val
GAC
[ENA]
¡û
>W1710629230
JPZQ01000001
Synergistota
Synergistes jonesii [JPZQ]
19756
19830
+
Val
GAC
[ENA]
¡û
>W1710629273
JPZR01000002
Synergistota
Synergistes jonesii [JPZR]
4315
4389
+
Val
GAC
[ENA]
¡û
>W1710629316
JPZS01000001
Synergistota
Synergistes jonesii [JPZS]
19756
19830
+
Val
GAC
[ENA]
¡û
>W1710631856
JQEK01000047
Synergistota
Synergistes jonesii [JQEK]
165069
164995
-
Val
GAC
[ENA]
¡û
>W1710631864
JQEL01000001
Synergistota
Synergistes jonesii [JQEL]
19756
19830
+
Val
GAC
[ENA]
¡û
Identical group No.676117 (3 seq.)
>W1711629545
MPPC01000006
Synergistota
Aminobacterium sp. EBM-42 [MPPC]
20352
20426
+
Val
GAC
[ENA]
¡û
>WENV170725599
LSQX01348891
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
20278
20352
+
Val
GAC
[ENA]
¢þ
>C10100313
CP001997
Synergistota
Aminobacterium colombiense DSM 12261 [CP001997]
820203
820277
+
Val
GAC
[Ensembl]
¡û
Identical group No.681012 (7 seq.)
>C171050562
CP016757
Synergistota
Cloacibacillus porcorum CL-84 [CP016757]
1884678
1884604
-
Val
GAC
-
¡û
>WENV181915614
OGYF01011263
[OGYF] human gut metagenome; faeces
130
204
+
Val
GAC
[ENA]
¢þ
>WENV182143797
OHKV01026302
[OHKV] human gut metagenome; feces
769
695
-
Val
GAC
[ENA]
¢þ
>WENV182221120
OHQS01054092
[OHQS] human gut metagenome; feces
324
398
+
Val
GAC
[ENA]
¢þ
>WENV182274843
OHUK01016053
[OHUK] human gut metagenome; feces
441
515
+
Val
GAC
[ENA]
¢þ
>WENV182398826
OIEN01011265
[OIEN] human gut metagenome; human gut
309
235
-
Val
GAC
[ENA]
¢þ
>WENV182537535
OIXH01009719
[OIXH] human gut metagenome; faeces
736
662
-
Val
GAC
[ENA]
¢þ
Identical group No.692196 (8 seq.)
>WENV181311848
OFJB01016045
[OFJB] sludge metagenome; sludge
866
792
-
Val
GAC
[ENA]
¢þ
>WENV181908454
OGYB01000037
[OGYB] human gut metagenome; faeces
44552
44626
+
Val
GAC
[ENA]
¢þ
>WENV183039997
OLGB01030862
[OLGB] human gut metagenome; faeces
116
190
+
Val
GAC
[ENA]
¢þ
>WENV170657277
JTFO01116416
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
181
255
+
Val
GAC
[ENA]
¢þ
>WENV170685221
LFRM01079115
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
2606
2532
-
Val
GAC
[ENA]
¢þ
>WENV170719801
LSQX01129291
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
2620
2546
-
Val
GAC
[ENA]
¢þ
>WENV170720752
LSQX01164775
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
12406
12332
-
Val
GAC
[ENA]
¢þ
>W121000489
ACUH01000051
Synergistota
Synergistes sp. 3_1_syn1 [ACUH]
91167
91241
+
Val
GAC
[ENA]
¡û
Identical group No.698457 (3 seq.)
>WENV180096747
MTBK01144849
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
212328
212254
-
Val
GAC
[ENA]
¢þ
>W141278963
JAFY01000007
Synergistota
Aminiphilus circumscriptus DSM 16581 [JAFY]
448787
448861
+
Val
GAC
[ENA]
¡û
>WENV170972845
MTKY01003004
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
329
403
+
Val
GAC
[ENA]
¢þ
Identical group No.702180 (8 seq.)
>W1711744485
MUHX01000002
Synergistota
Pyramidobacter sp. C12-8 [MUHX]
24785
24711
-
Val
GAC
[ENA]
¡û
>WENV181989504
OHAO01013038
[OHAO] human gut metagenome; faeces
1296
1222
-
Val
GAC
[ENA]
¢þ
>WENV183419703
OMAZ01021612
[OMAZ] human gut metagenome; feces
888
962
+
Val
GAC
[ENA]
¢þ
>WENV183763978
PPYE01311400
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
156
230
+
Val
GAC
[ENA]
¢þ
>W10113048
ADFP01000135
Synergistota
Pyramidobacter piscolens W5455 [ADFP]
3028
3102
+
Val
GAC
[ENA]
¡û
>W10113049
ADFP01000135
Synergistota
Pyramidobacter piscolens W5455 [ADFP]
3129
3203
+
Val
GAC
[ENA]
¡û
>W11116275
ADFP01000135
Synergistota
Pyramidobacter piscolens W5455 [ADFP]
3028
3102
+
Val
GAC
[ENA]
¡û
>W11116276
ADFP01000135
Synergistota
Pyramidobacter piscolens W5455 [ADFP]
3129
3203
+
Val
GAC
[ENA]
¡û
Identical group No.704963 (1 seq.)
>C161104025
FP929056
Synergistota
Fretibacterium fastidiosum SGP1 [FP929056]
899792
899866
+
Val
GAC
-
¡û
Identical group No.706864 (1 seq.)
>W11138615
AEIV01000002
Synergistota
Aminomonas paucivorans DSM 12260 [AEIV]
96106
96180
+
Val
GAC
[ENA]
¡û
Identical group No.713155 (2 seq.)
>W1711137555
LVBO01000042
Synergistota
Synergistales bacterium Syner_01 [LVBO]
3731
3805
+
Val
GAC
[ENA]
¡û
>W1610948675
LVBO01000042
Synergistota
Synergistales bacterium Syner_01 [LVBO]
3731
3805
+
Val
GAC
[ENA]
¡û
Identical group No.714274 (3 seq.)
>W141146875
AWWC01000028
Synergistota
Jonquetella sp. BV3C21 [AWWC]
31009
30935
-
Val
GAC
[ENA]
¡û
>W09132963
ACOO02000018
Synergistota
Jonquetella anthropi E3_33 E1 [ACOO]
88098
88172
+
Val
GAC
[ENA]
¡û
>W121017487
AGRU01000003
Synergistota
Jonquetella anthropi DSM 22815 [AGRU]
207394
207468
+
Val
GAC
[ENA]
¡û
Identical group No.744218 (5 seq.)
>WENV170656746
JTFO01039771
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
939
865
-
Val
GAC
[ENA]
¢þ
>WENV170656747
JTFO01039771
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
816
742
-
Val
GAC
[ENA]
¢þ
>WENV170657451
JTFO01155405
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
691
765
+
Val
GAC
[ENA]
¢þ
>W1710608674
FXBB01000001
Synergistota
Dethiosulfovibrio salsuginis [FXBB]
183642
183568
-
Val
GAC
[ENA]
¡û
>W1710608675
FXBB01000001
Synergistota
Dethiosulfovibrio salsuginis [FXBB]
183531
183457
-
Val
GAC
[ENA]
¡û
Identical group No.752748 (4 seq.)
>WENV181409422
OGCI01000163
[OGCI] hot springs metagenome; Hot spring water
82550
82476
-
Val
GAC
[ENA]
¢þ
>W09110146
ABUW01000004
Synergistota
Thermanaerovibrio acidaminovorans DSM 6589 [ABUW]
197310
197236
-
Val
GAC
[ENA]
¡û
>C10113016
CP001818
Synergistota
Thermanaerovibrio acidaminovorans DSM 6589 [CP001818]
1000934
1000860
-
Val
GAC
[Ensembl]
¡û
>W121031651
AHGV01000001
Synergistota
Thermanaerovibrio velox DSM 12556 [AHGV]
990243
990169
-
Val
GAC
[ENA]
¡û
Identical group No.757415 (2 seq.)
>W09108922
ABTR01000003
Synergistota
Dethiosulfovibrio peptidovorans DSM 11002 [ABTR]
222005
221931
-
Val
GAC
[ENA]
¡û
>W09108923
ABTR01000003
Synergistota
Dethiosulfovibrio peptidovorans DSM 11002 [ABTR]
221897
221823
-
Val
GAC
[ENA]
¡û
Identical group No.772430 (1 seq.)
>W141279009
JAFZ01000001
Synergistota
Aminobacterium mobile DSM 12262 [JAFZ]
1354681
1354607
-
Val
GAC
[ENA]
¡û
Identical group No.772433 (1 seq.)
>W141452043
JFBR01000002
Synergistota
Cloacibacillus evryensis DSM 19522 [JFBR]
519741
519667
-
Val
GAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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