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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Synergistota
Anticodon = GGC
HIT:
17 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.488000 (1 seq.)
>W1712039370
NFJQ01000006
Synergistota
Cloacibacillus sp. An23 [NFJQ]
138475
138400
-
Ala
GGC
[ENA]
¡û
Identical group No.490521 (2 seq.)
>W1711629563
MPPC01000017
Synergistota
Aminobacterium sp. EBM-42 [MPPC]
83711
83786
+
Ala
GGC
[ENA]
¡û
>C10100304
CP001997
Synergistota
Aminobacterium colombiense DSM 12261 [CP001997]
595579
595654
+
Ala
GGC
[Ensembl]
¡û
Identical group No.491406 (1 seq.)
>W141701226
JMKI01000052
Synergistota
Synergistes jonesii [JMKI]
194
269
+
Ala
GGC
[ENA]
¡û
Identical group No.491408 (8 seq.)
>WENV180001153
FLNX01000073
[FLNX] bioreactor metagenome; Moose rumen
31155
31080
-
Ala
GGC
[ENA]
¢þ
>C191012319
CP016379
Bacillota
Anoxybacter fermentans DY22613 [CP016379]
3354255
3354330
+
Ala
GGC
-
¡û
>W141701228
JMKI01000054
Synergistota
Synergistes jonesii [JMKI]
1200
1125
-
Ala
GGC
[ENA]
¡û
>W1710629268
JPZQ01000062
Synergistota
Synergistes jonesii [JPZQ]
334
259
-
Ala
GGC
[ENA]
¡û
>W1710629279
JPZR01000007
Synergistota
Synergistes jonesii [JPZR]
187351
187276
-
Ala
GGC
[ENA]
¡û
>W1710629354
JPZS01000054
Synergistota
Synergistes jonesii [JPZS]
333
258
-
Ala
GGC
[ENA]
¡û
>W1710631820
JQEK01000010
Synergistota
Synergistes jonesii [JQEK]
110951
111026
+
Ala
GGC
[ENA]
¡û
>W1710631902
JQEL01000054
Synergistota
Synergistes jonesii [JQEL]
334
259
-
Ala
GGC
[ENA]
¡û
Identical group No.495402 (18 seq.)
>W1710926242
LOED01000005
Bacillota
Fervidicola ferrireducens [LOED]
382
457
+
Ala
GGC
[ENA]
¡û
>W1711137560
LVBO01000177
Synergistota
Synergistales bacterium Syner_01 [LVBO]
3553
3478
-
Ala
GGC
[ENA]
¡û
>C024550
AP006840
Bacillota
Symbiobacterium thermophilum IAM 14863 IAM14863 [AP006840]
293649
293724
+
Ala
GGC
[Ensembl]
¡û
>C024624
AP006840
Bacillota
Symbiobacterium thermophilum IAM 14863 IAM14863 [AP006840]
2130348
2130273
-
Ala
GGC
[Ensembl]
¡û
>WENV180735402
ODGZ01211387
[ODGZ] human metagenome; G_DNA_Supragingival plaque
5
80
+
Ala
GGC
[ENA]
¢þ
>WENV180943776
ODUC01002437
[ODUC] human metagenome; G_DNA_Supragingival plaque
127
52
-
Ala
GGC
[ENA]
¢þ
>WENV180981904
ODVE01084892
[ODVE] human metagenome; G_DNA_Supragingival plaque
270
195
-
Ala
GGC
[ENA]
¢þ
>WENV181050218
ODYD01009118
[ODYD] human metagenome; G_DNA_Supragingival plaque
2787
2712
-
Ala
GGC
[ENA]
¢þ
>WENV181077294
OEAP01039628
[OEAP] human metagenome; G_DNA_Supragingival plaque
144
69
-
Ala
GGC
[ENA]
¢þ
>WENV181081748
OEAS01359395
[OEAS] human metagenome; G_DNA_Supragingival plaque
193
118
-
Ala
GGC
[ENA]
¢þ
>WENV181180256
OEJT01164252
[OEJT] human metagenome; G_DNA_Supragingival plaque
100
175
+
Ala
GGC
[ENA]
¢þ
>WENV181182540
OEJV01015968
[OEJV] human metagenome; G_DNA_Supragingival plaque
274
349
+
Ala
GGC
[ENA]
¢þ
>WENV183718554
PDWJ01004843
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
2184
2259
+
Ala
GGC
[ENA]
¢þ
>W09108908
ABTR01000002
Synergistota
Dethiosulfovibrio peptidovorans DSM 11002 [ABTR]
127190
127115
-
Ala
GGC
[ENA]
¡û
>C10113549
CP002131
Bacillota
Thermosediminibacter oceani DSM 16646 [CP002131]
1794463
1794388
-
Ala
GGC
[Ensembl]
¡û
>W1610783735
LOED01000005
Bacillota
Fervidicola ferrireducens [LOED]
382
457
+
Ala
GGC
[ENA]
¡û
>W1610948680
LVBO01000177
Synergistota
Synergistales bacterium Syner_01 [LVBO]
3553
3478
-
Ala
GGC
[ENA]
¡û
>W1710081781
BDGJ01000082
Bacillota
Calderihabitans maritimus [BDGJ]
6269
6194
-
Ala
GGC
[ENA]
¡û
Identical group No.503019 (12 seq.)
>C171050571
CP016757
Synergistota
Cloacibacillus porcorum CL-84 [CP016757]
496662
496587
-
Ala
GGC
-
¡û
>WENV180677627
OCVV011746499
[OCVV] gut metagenome; gut
208
133
-
Ala
GGC
[ENA]
¢þ
>WENV180677628
OCVV011746499
[OCVV] gut metagenome; gut
208
133
-
Ala
GGC
[ENA]
¢þ
>WENV181908708
OGYB01000356
[OGYB] human gut metagenome; faeces
8252
8177
-
Ala
GGC
[ENA]
¢þ
>WENV182212613
OHQG01002252
[OHQG] human gut metagenome; feces
4152
4227
+
Ala
GGC
[ENA]
¢þ
>WENV182216155
OHQM01024593
[OHQM] human gut metagenome; feces
713
638
-
Ala
GGC
[ENA]
¢þ
>WENV182537966
OIXH01026905
[OIXH] human gut metagenome; faeces
85
10
-
Ala
GGC
[ENA]
¢þ
>WENV183038644
OLGB01000936
[OLGB] human gut metagenome; faeces
115
190
+
Ala
GGC
[ENA]
¢þ
>WENV183419565
OMAZ01007446
[OMAZ] human gut metagenome; feces
91
16
-
Ala
GGC
[ENA]
¢þ
>WENV170562623
CZCB01003925
[CZCB] anaerobic digester metagenome; anaerobic digester
2596
2671
+
Ala
GGC
[ENA]
¢þ
>W141452034
JFBR01000002
Synergistota
Cloacibacillus evryensis DSM 19522 [JFBR]
1657341
1657416
+
Ala
GGC
[ENA]
¡û
>W121000465
ACUH01000028
Synergistota
Synergistes sp. 3_1_syn1 [ACUH]
1590
1515
-
Ala
GGC
[ENA]
¡û
Identical group No.516282 (9 seq.)
>W1711137599
LVBP01000279
Synergistota
Synergistales bacterium Syner_02 [LVBP]
1870
1795
-
Ala
GGC
[ENA]
¡û
>WENV180810218
ODJK01158500
[ODJK] human metagenome; G_DNA_Subgingival plaque
230
155
-
Ala
GGC
[ENA]
¢þ
>WENV181091618
OEBC01059604
[OEBC] human metagenome; G_DNA_Supragingival plaque
633
558
-
Ala
GGC
[ENA]
¢þ
>W141279018
JAFZ01000002
Synergistota
Aminobacterium mobile DSM 12262 [JAFZ]
238551
238476
-
Ala
GGC
[ENA]
¡û
>WENV183508030
OMHA01002352
[OMHA] human oral metagenome; human oral
321
246
-
Ala
GGC
[ENA]
¢þ
>WENV170656666
JTFO01031809
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
228
153
-
Ala
GGC
[ENA]
¢þ
>WENV170656713
JTFO01037256
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
183
108
-
Ala
GGC
[ENA]
¢þ
>W1610948719
LVBP01000279
Synergistota
Synergistales bacterium Syner_02 [LVBP]
1870
1795
-
Ala
GGC
[ENA]
¡û
>W1710608714
FXBB01000031
Synergistota
Dethiosulfovibrio salsuginis [FXBB]
2079
2004
-
Ala
GGC
[ENA]
¡û
Identical group No.530895 (4 seq.)
>WENV180789191
ODIS01312311
[ODIS] human metagenome; G_DNA_Supragingival plaque
256
181
-
Ala
GGC
[ENA]
¢þ
>WENV180809519
ODJK01022513
[ODJK] human metagenome; G_DNA_Subgingival plaque
578
653
+
Ala
GGC
[ENA]
¢þ
>WENV180952272
ODUH01200729
[ODUH] human metagenome; G_DNA_Subgingival plaque
159
84
-
Ala
GGC
[ENA]
¢þ
>C161104035
FP929056
Synergistota
Fretibacterium fastidiosum SGP1 [FP929056]
1878531
1878456
-
Ala
GGC
-
¡û
Identical group No.541205 (8 seq.)
>W1711744479
MUHX01000001
Synergistota
Pyramidobacter sp. C12-8 [MUHX]
4298
4373
+
Ala
GGC
[ENA]
¡û
>WENV181438151
OGDH01011816
[OGDH] metagenome; Human gut stool
789
864
+
Ala
GGC
[ENA]
¢þ
>WENV181638992
OGNC01055656
[OGNC] metagenome; Human gut stool
579
504
-
Ala
GGC
[ENA]
¢þ
>WENV181865634
OGWU01055400
[OGWU] human gut metagenome; faeces
658
733
+
Ala
GGC
[ENA]
¢þ
>WENV181988920
OHAO01001360
[OHAO] human gut metagenome; faeces
613
538
-
Ala
GGC
[ENA]
¢þ
>WENV183763915
PPYE01311215
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
30203
30128
-
Ala
GGC
[ENA]
¢þ
>W10113008
ADFP01000006
Synergistota
Pyramidobacter piscolens W5455 [ADFP]
93
168
+
Ala
GGC
[ENA]
¡û
>W11116235
ADFP01000006
Synergistota
Pyramidobacter piscolens W5455 [ADFP]
93
168
+
Ala
GGC
[ENA]
¡û
Identical group No.554144 (7 seq.)
>W141146847
AWWC01000018
Synergistota
Jonquetella sp. BV3C21 [AWWC]
42922
42997
+
Ala
GGC
[ENA]
¡û
>W141146848
AWWC01000018
Synergistota
Jonquetella sp. BV3C21 [AWWC]
43030
43105
+
Ala
GGC
[ENA]
¡û
>W09132949
ACOO02000017
Synergistota
Jonquetella anthropi E3_33 E1 [ACOO]
43154
43229
+
Ala
GGC
[ENA]
¡û
>W09132950
ACOO02000017
Synergistota
Jonquetella anthropi E3_33 E1 [ACOO]
43263
43338
+
Ala
GGC
[ENA]
¡û
>W1911726583
QSNL01000002
Bacillota
Thermoanaerobacteraceae bacterium SP2 [QSNL]
125962
125887
-
Ala
GGC
[ENA]
¡û
>W121017476
AGRU01000003
Synergistota
Jonquetella anthropi DSM 22815 [AGRU]
47893
47968
+
Ala
GGC
[ENA]
¡û
>W121017477
AGRU01000003
Synergistota
Jonquetella anthropi DSM 22815 [AGRU]
48002
48077
+
Ala
GGC
[ENA]
¡û
Identical group No.561268 (6 seq.)
>W1711137624
LVBQ01000053
Synergistota
Synergistales bacterium Syner_03 [LVBQ]
6123
6198
+
Ala
GGC
[ENA]
¡û
>WENV181311995
OFJB01030582
[OFJB] sludge metagenome; sludge
319
244
-
Ala
GGC
[ENA]
¢þ
>WENV170657430
JTFO01149015
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
603
678
+
Ala
GGC
[ENA]
¢þ
>WENV170688886
LFRM01266303
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
7269
7344
+
Ala
GGC
[ENA]
¢þ
>WENV170976172
MTKZ01005412
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
3362
3437
+
Ala
GGC
[ENA]
¢þ
>W1610948744
LVBQ01000053
Synergistota
Synergistales bacterium Syner_03 [LVBQ]
6123
6198
+
Ala
GGC
[ENA]
¡û
Identical group No.658506 (8 seq.)
>WENV170562805
CZCB01005500
[CZCB] anaerobic digester metagenome; anaerobic digester
9438
9364
-
Ala
GGC
[ENA]
¢þ
>WENV170684156
LFRM01023697
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
4233
4307
+
Ala
GGC
[ENA]
¢þ
>WENV170717728
LSQX01047433
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
3562
3488
-
Ala
GGC
[ENA]
¢þ
>WENV170967103
MTKW01000251
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
3148
3222
+
Ala
GGC
[ENA]
¢þ
>W09126620
ACJX01000165
Synergistota
Acetomicrobium hydrogeniformans ATCC BAA-1850 [ACJX]
1962
1888
-
Ala
GGC
[ENA]
¡û
>C121008056
CP003198
Synergistota
Acetomicrobium mobile DSM 13181 [CP003198]
523193
523267
+
Ala
GGC
[Ensembl]
¡û
>W1710530810
FNPD01000001
Synergistota
Acetomicrobium thermoterrenum DSM 13490 [FNPD]
120577
120651
+
Ala
GGC
[ENA]
¡û
>W1710594085
FSQZ01000001
Synergistota
Acetomicrobium flavidum [FSQZ]
548734
548660
-
Ala
GGC
[ENA]
¡û
Identical group No.684011 (8 seq.)
>WENV170676503
LDZS01000260
[LDZS] terrestrial metagenome; oil reservoir sample K3
150
224
+
Ala
GGC
[ENA]
¢þ
>WENV170677164
LDZT01003276
[LDZT] terrestrial metagenome; oil reservoir sample SB1
6109
6035
-
Ala
GGC
[ENA]
¢þ
>WENV170679041
LDZU01006781
[LDZU] terrestrial metagenome; oil reservoir sample SB2
7472
7546
+
Ala
GGC
[ENA]
¢þ
>C121005696
CP003096
Synergistota
Thermovirga lienii DSM 17291 [CP003096]
1457806
1457732
-
Ala
GGC
[Ensembl]
¡û
>W1610613625
LGGB01000028
Synergistota
Synergistales bacterium 53_16 [LGGB]
6109
6035
-
Ala
GGC
[ENA]
¡û
>W1610614488
LGHG01000032
Synergistota
Synergistales bacterium 54_9 [LGHG]
7472
7546
+
Ala
GGC
[ENA]
¡û
>W1710734797
LGGB01000028
Synergistota
Synergistales bacterium 53_16 [LGGB]
6109
6035
-
Ala
GGC
[ENA]
¡û
>W1710735469
LGHG01000032
Synergistota
Synergistales bacterium 54_9 [LGHG]
7472
7546
+
Ala
GGC
[ENA]
¡û
Identical group No.684038 (3 seq.)
>WENV170676932
LDZS01003218
[LDZS] terrestrial metagenome; oil reservoir sample K3
1687
1613
-
Ala
GGC
[ENA]
¢þ
>W1610613300
LGFQ01000038
Synergistota
Synergistales bacterium 54_24 [LGFQ]
1687
1613
-
Ala
GGC
[ENA]
¡û
>W1710734507
LGFQ01000038
Synergistota
Synergistales bacterium 54_24 [LGFQ]
1687
1613
-
Ala
GGC
[ENA]
¡û
Identical group No.706861 (5 seq.)
>WENV181409753
OGCI01000560
[OGCI] hot springs metagenome; Hot spring water
6688
6614
-
Ala
GGC
[ENA]
¢þ
>W09110120
ABUW01000002
Synergistota
Thermanaerovibrio acidaminovorans DSM 6589 [ABUW]
136088
136162
+
Ala
GGC
[ENA]
¡û
>C10113004
CP001818
Synergistota
Thermanaerovibrio acidaminovorans DSM 6589 [CP001818]
1447965
1447891
-
Ala
GGC
[Ensembl]
¡û
>W11138590
AEIV01000001
Synergistota
Aminomonas paucivorans DSM 12260 [AEIV]
890540
890614
+
Ala
GGC
[ENA]
¡û
>W121031617
AHGV01000001
Synergistota
Thermanaerovibrio velox DSM 12556 [AHGV]
406044
406118
+
Ala
GGC
[ENA]
¡û
Identical group No.721550 (1 seq.)
>W131157324
AQRZ01000041
Synergistota
Synergistetes bacterium JGI 0000079-D21 [AQRZ]
4220
4294
+
Ala
GGC
[ENA]
¡û
Identical group No.762360 (1 seq.)
>W141278949
JAFY01000005
Synergistota
Aminiphilus circumscriptus DSM 16581 [JAFY]
221555
221481
-
Ala
GGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK