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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Synergistota
Anticodon = GGG
HIT:
17 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.236090 (3 seq.)
>WENV170676910
LDZS01003184
[LDZS] terrestrial metagenome; oil reservoir sample K3
20426
20348
-
Pro
GGG
[ENA]
¢þ
>W1610613278
LGFQ01000004
Synergistota
Synergistales bacterium 54_24 [LGFQ]
20426
20348
-
Pro
GGG
[ENA]
¡û
>W1710734485
LGFQ01000004
Synergistota
Synergistales bacterium 54_24 [LGFQ]
20426
20348
-
Pro
GGG
[ENA]
¡û
Identical group No.241841 (14 seq.)
>WENV181230127
OFEK01000307
[OFEK] activated sludge metagenome; Anaerobic digester
11183
11106
-
Pro
GGG
[ENA]
¢þ
>WENV170678337
LDZT01014008
[LDZT] terrestrial metagenome; oil reservoir sample SB1
59800
59877
+
Pro
GGG
[ENA]
¢þ
>WENV170678621
LDZU01003378
[LDZU] terrestrial metagenome; oil reservoir sample SB2
25867
25790
-
Pro
GGG
[ENA]
¢þ
>WENV170718925
LSQX01095480
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
1372
1449
+
Pro
GGG
[ENA]
¢þ
>WENV170725625
LSQX01349791
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
1317
1394
+
Pro
GGG
[ENA]
¢þ
>WENV170967219
MTKW01000515
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
136962
136885
-
Pro
GGG
[ENA]
¢þ
>WENV170971377
MTKX01004540
[MTKX] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
237602
237525
-
Pro
GGG
[ENA]
¢þ
>WENV170977389
MTKZ01022312
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
9316
9393
+
Pro
GGG
[ENA]
¢þ
>W1610599279
LFLA01000022
Nitrospinota
Nitrospina sp. LS_NOB [LFLA]
141040
141117
+
Pro
GGG
[ENA]
¡û
>W1610613689
LGGE01000001
Synergistota
Synergistales bacterium 57_84 [LGGE]
59800
59877
+
Pro
GGG
[ENA]
¡û
>W1610614159
LGGV01000003
Synergistota
Synergistales bacterium 58_81 [LGGV]
25867
25790
-
Pro
GGG
[ENA]
¡û
>W1710720711
LFLA01000022
Nitrospinota
Nitrospina sp. LS_NOB [LFLA]
141040
141117
+
Pro
GGG
[ENA]
¡û
>W1710734842
LGGE01000001
Synergistota
Synergistales bacterium 57_84 [LGGE]
59800
59877
+
Pro
GGG
[ENA]
¡û
>W1710735242
LGGV01000003
Synergistota
Synergistales bacterium 58_81 [LGGV]
25867
25790
-
Pro
GGG
[ENA]
¡û
Identical group No.243285 (11 seq.)
>W1712039372
NFJQ01000008
Synergistota
Cloacibacillus sp. An23 [NFJQ]
150550
150627
+
Pro
GGG
[ENA]
¡û
>C171050555
CP016757
Synergistota
Cloacibacillus porcorum CL-84 [CP016757]
2348017
2347940
-
Pro
GGG
-
¡û
>WENV180274805
OBHE01052535
[OBHE] human gut metagenome; human gut
196
273
+
Pro
GGG
[ENA]
¢þ
>WENV181865692
OGWU01070444
[OGWU] human gut metagenome; faeces
569
646
+
Pro
GGG
[ENA]
¢þ
>WENV181915276
OGYF01004632
[OGYF] human gut metagenome; faeces
4624
4547
-
Pro
GGG
[ENA]
¢þ
>WENV182031156
OHCS01003824
[OHCS] human gut metagenome; feces
2429
2506
+
Pro
GGG
[ENA]
¢þ
>WENV182180667
OHNO01006097
[OHNO] human gut metagenome; feces
824
901
+
Pro
GGG
[ENA]
¢þ
>WENV182212835
OHQG01009993
[OHQG] human gut metagenome; feces
1304
1227
-
Pro
GGG
[ENA]
¢þ
>WENV182215804
OHQM01002799
[OHQM] human gut metagenome; feces
1712
1635
-
Pro
GGG
[ENA]
¢þ
>WENV182688064
OJOA01054330
[OJOA] human gut metagenome; human gut
611
534
-
Pro
GGG
[ENA]
¢þ
>WENV182892132
OKSH01020658
[OKSH] human gut metagenome; faeces
1436
1513
+
Pro
GGG
[ENA]
¢þ
Identical group No.243587 (7 seq.)
>W1711744517
MUHX01000041
Synergistota
Pyramidobacter sp. C12-8 [MUHX]
446
523
+
Pro
GGG
[ENA]
¡û
>WENV181638926
OGNC01034289
[OGNC] metagenome; Human gut stool
78
155
+
Pro
GGG
[ENA]
¢þ
>WENV183763935
PPYE01311247
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
14448
14371
-
Pro
GGG
[ENA]
¢þ
>WENV183787504
PPYF01329649
[PPYF] human gut metagenome; stool from patient with Crohn's disease
348
425
+
Pro
GGG
[ENA]
¢þ
>W09108931
ABTR01000017
Synergistota
Dethiosulfovibrio peptidovorans DSM 11002 [ABTR]
30952
30875
-
Pro
GGG
[ENA]
¡û
>W10113019
ADFP01000047
Synergistota
Pyramidobacter piscolens W5455 [ADFP]
118760
118837
+
Pro
GGG
[ENA]
¡û
>W11116246
ADFP01000047
Synergistota
Pyramidobacter piscolens W5455 [ADFP]
118760
118837
+
Pro
GGG
[ENA]
¡û
Identical group No.244958 (1 seq.)
>W1710594096
FSQZ01000001
Synergistota
Acetomicrobium flavidum [FSQZ]
206457
206380
-
Pro
GGG
[ENA]
¡û
Identical group No.245179 (5 seq.)
>WENV170008207
AMZC01004631
[AMZC] bioreactor sludge metagenome; anaerobic thermophilic cellulolytic sludge from lab reactor
1078
1001
-
Pro
GGG
[ENA]
¢þ
>WENV170563472
CZCB01019385
[CZCB] anaerobic digester metagenome; anaerobic digester
6702
6779
+
Pro
GGG
[ENA]
¢þ
>W09126606
ACJX01000142
Synergistota
Acetomicrobium hydrogeniformans ATCC BAA-1850 [ACJX]
23818
23895
+
Pro
GGG
[ENA]
¡û
>C121008067
CP003198
Synergistota
Acetomicrobium mobile DSM 13181 [CP003198]
882639
882716
+
Pro
GGG
[Ensembl]
¡û
>W1710530816
FNPD01000001
Synergistota
Acetomicrobium thermoterrenum DSM 13490 [FNPD]
298346
298269
-
Pro
GGG
[ENA]
¡û
Identical group No.245513 (4 seq.)
>W1711629558
MPPC01000010
Synergistota
Aminobacterium sp. EBM-42 [MPPC]
113338
113261
-
Pro
GGG
[ENA]
¡û
>W141279011
JAFZ01000001
Synergistota
Aminobacterium mobile DSM 12262 [JAFZ]
1082080
1082003
-
Pro
GGG
[ENA]
¡û
>WENV170719199
LSQX01104951
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
153206
153129
-
Pro
GGG
[ENA]
¢þ
>C10100315
CP001997
Synergistota
Aminobacterium colombiense DSM 12261 [CP001997]
1116777
1116854
+
Pro
GGG
[Ensembl]
¡û
Identical group No.245583 (15 seq.)
>WENV181908603
OGYB01000162
[OGYB] human gut metagenome; faeces
43397
43474
+
Pro
GGG
[ENA]
¢þ
>WENV182143900
OHKV01050651
[OHKV] human gut metagenome; feces
519
442
-
Pro
GGG
[ENA]
¢þ
>WENV182220885
OHQS01013825
[OHQS] human gut metagenome; feces
182
259
+
Pro
GGG
[ENA]
¢þ
>WENV182275083
OHUK01065702
[OHUK] human gut metagenome; feces
232
309
+
Pro
GGG
[ENA]
¢þ
>WENV182538014
OIXH01030663
[OIXH] human gut metagenome; faeces
1046
969
-
Pro
GGG
[ENA]
¢þ
>WENV183039115
OLGB01003223
[OLGB] human gut metagenome; faeces
4037
4114
+
Pro
GGG
[ENA]
¢þ
>WENV170686769
LFRM01162973
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
1423
1346
-
Pro
GGG
[ENA]
¢þ
>W141452036
JFBR01000002
Synergistota
Cloacibacillus evryensis DSM 19522 [JFBR]
1009862
1009785
-
Pro
GGG
[ENA]
¡û
>W141701198
JMKI01000026
Synergistota
Synergistes jonesii [JMKI]
99667
99590
-
Pro
GGG
[ENA]
¡û
>W121000506
ACUH01000059
Synergistota
Synergistes sp. 3_1_syn1 [ACUH]
122110
122033
-
Pro
GGG
[ENA]
¡û
>W1710629241
JPZQ01000030
Synergistota
Synergistes jonesii [JPZQ]
98875
98798
-
Pro
GGG
[ENA]
¡û
>W1710629285
JPZR01000022
Synergistota
Synergistes jonesii [JPZR]
98529
98452
-
Pro
GGG
[ENA]
¡û
>W1710629327
JPZS01000024
Synergistota
Synergistes jonesii [JPZS]
98529
98452
-
Pro
GGG
[ENA]
¡û
>W1710631847
JQEK01000046
Synergistota
Synergistes jonesii [JQEK]
98530
98453
-
Pro
GGG
[ENA]
¡û
>W1710631875
JQEL01000027
Synergistota
Synergistes jonesii [JQEL]
98529
98452
-
Pro
GGG
[ENA]
¡û
Identical group No.246111 (16 seq.)
>WENV180729092
ODGU01193035
[ODGU] human metagenome; G_DNA_Supragingival plaque
229
152
-
Pro
GGG
[ENA]
¢þ
>WENV180732044
ODGW01086065
[ODGW] human metagenome; G_DNA_Supragingival plaque
114
191
+
Pro
GGG
[ENA]
¢þ
>WENV180735295
ODGZ01138282
[ODGZ] human metagenome; G_DNA_Supragingival plaque
31
108
+
Pro
GGG
[ENA]
¢þ
>WENV180751812
ODHS01182316
[ODHS] human metagenome; G_DNA_Supragingival plaque
163
240
+
Pro
GGG
[ENA]
¢þ
>WENV180789124
ODIS01247146
[ODIS] human metagenome; G_DNA_Supragingival plaque
66
143
+
Pro
GGG
[ENA]
¢þ
>WENV180797766
ODJB01115952
[ODJB] human metagenome; G_DNA_Supragingival plaque
223
146
-
Pro
GGG
[ENA]
¢þ
>WENV180810156
ODJK01137427
[ODJK] human metagenome; G_DNA_Subgingival plaque
270
193
-
Pro
GGG
[ENA]
¢þ
>WENV180944361
ODUC01015087
[ODUC] human metagenome; G_DNA_Supragingival plaque
1496
1573
+
Pro
GGG
[ENA]
¢þ
>WENV180981809
ODVE01064892
[ODVE] human metagenome; G_DNA_Supragingival plaque
383
460
+
Pro
GGG
[ENA]
¢þ
>WENV181050668
ODYD01039851
[ODYD] human metagenome; G_DNA_Supragingival plaque
251
174
-
Pro
GGG
[ENA]
¢þ
>WENV181077372
OEAP01047478
[OEAP] human metagenome; G_DNA_Supragingival plaque
401
324
-
Pro
GGG
[ENA]
¢þ
>WENV181081331
OEAS01179012
[OEAS] human metagenome; G_DNA_Supragingival plaque
145
222
+
Pro
GGG
[ENA]
¢þ
>WENV181091546
OEBC01046631
[OEBC] human metagenome; G_DNA_Supragingival plaque
134
57
-
Pro
GGG
[ENA]
¢þ
>WENV181180234
OEJT01141992
[OEJT] human metagenome; G_DNA_Supragingival plaque
204
127
-
Pro
GGG
[ENA]
¢þ
>WENV181182983
OEJV01102274
[OEJV] human metagenome; G_DNA_Supragingival plaque
273
350
+
Pro
GGG
[ENA]
¢þ
>C161104053
FP929056
Synergistota
Fretibacterium fastidiosum SGP1 [FP929056]
753905
753828
-
Pro
GGG
-
¡û
Identical group No.246824 (8 seq.)
>WENV183516093
OMKS01130607
[OMKS] sediment metagenome; hot spring sediment
302
379
+
Pro
GGG
[ENA]
¢þ
>WENV170677169
LDZT01003314
[LDZT] terrestrial metagenome; oil reservoir sample SB1
7127
7050
-
Pro
GGG
[ENA]
¢þ
>WENV170679032
LDZU01006752
[LDZU] terrestrial metagenome; oil reservoir sample SB2
43131
43054
-
Pro
GGG
[ENA]
¢þ
>C121005690
CP003096
Synergistota
Thermovirga lienii DSM 17291 [CP003096]
1177023
1177100
+
Pro
GGG
[Ensembl]
¡û
>W1610613630
LGGB01000066
Synergistota
Synergistales bacterium 53_16 [LGGB]
7127
7050
-
Pro
GGG
[ENA]
¡û
>W1610614479
LGHG01000003
Synergistota
Synergistales bacterium 54_9 [LGHG]
43131
43054
-
Pro
GGG
[ENA]
¡û
>W1710734802
LGGB01000066
Synergistota
Synergistales bacterium 53_16 [LGGB]
7127
7050
-
Pro
GGG
[ENA]
¡û
>W1710735460
LGHG01000003
Synergistota
Synergistales bacterium 54_9 [LGHG]
43131
43054
-
Pro
GGG
[ENA]
¡û
Identical group No.248667 (5 seq.)
>W1711137588
LVBP01000176
Synergistota
Synergistales bacterium Syner_02 [LVBP]
17226
17303
+
Pro
GGG
[ENA]
¡û
>WENV180346193
OBLN01037116
[OBLN] sediment metagenome; sediment
42
119
+
Pro
GGG
[ENA]
¢þ
>WENV170687794
LFRM01211792
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
336
413
+
Pro
GGG
[ENA]
¢þ
>WENV170717467
LSQX01036117
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
2239
2316
+
Pro
GGG
[ENA]
¢þ
>W1610948708
LVBP01000176
Synergistota
Synergistales bacterium Syner_02 [LVBP]
17226
17303
+
Pro
GGG
[ENA]
¡û
Identical group No.253207 (5 seq.)
>WENV181409161
OGCI01000019
[OGCI] hot springs metagenome; Hot spring water
9456
9533
+
Pro
GGG
[ENA]
¢þ
>W09110147
ABUW01000004
Synergistota
Thermanaerovibrio acidaminovorans DSM 6589 [ABUW]
18740
18663
-
Pro
GGG
[ENA]
¡û
>C10113017
CP001818
Synergistota
Thermanaerovibrio acidaminovorans DSM 6589 [CP001818]
822361
822284
-
Pro
GGG
[Ensembl]
¡û
>W11138600
AEIV01000001
Synergistota
Aminomonas paucivorans DSM 12260 [AEIV]
1307588
1307511
-
Pro
GGG
[ENA]
¡û
>W121031638
AHGV01000001
Synergistota
Thermanaerovibrio velox DSM 12556 [AHGV]
1039334
1039411
+
Pro
GGG
[ENA]
¡û
Identical group No.254611 (2 seq.)
>W1711137575
LVBO01000438
Synergistota
Synergistales bacterium Syner_01 [LVBO]
1053
976
-
Pro
GGG
[ENA]
¡û
>W1610948695
LVBO01000438
Synergistota
Synergistales bacterium Syner_01 [LVBO]
1053
976
-
Pro
GGG
[ENA]
¡û
Identical group No.258131 (2 seq.)
>W1711137606
LVBQ01000002
Synergistota
Synergistales bacterium Syner_03 [LVBQ]
37673
37750
+
Pro
GGG
[ENA]
¡û
>W1610948726
LVBQ01000002
Synergistota
Synergistales bacterium Syner_03 [LVBQ]
37673
37750
+
Pro
GGG
[ENA]
¡û
Identical group No.266684 (1 seq.)
>W141278983
JAFY01000007
Synergistota
Aminiphilus circumscriptus DSM 16581 [JAFY]
595219
595142
-
Pro
GGG
[ENA]
¡û
Identical group No.363246 (3 seq.)
>W141146831
AWWC01000001
Synergistota
Jonquetella sp. BV3C21 [AWWC]
64572
64496
-
Pro
GGG
[ENA]
¡û
>W09132981
ACOO02000031
Synergistota
Jonquetella anthropi E3_33 E1 [ACOO]
55913
55989
+
Pro
GGG
[ENA]
¡û
>W121017508
AGRU01000004
Synergistota
Jonquetella anthropi DSM 22815 [AGRU]
145459
145535
+
Pro
GGG
[ENA]
¡û
Identical group No.406168 (3 seq.)
>WENV170655979
JTFN01106138
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
634
558
-
Pro
GGG
[ENA]
¢þ
>WENV170657001
JTFO01067447
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
536
460
-
Pro
GGG
[ENA]
¢þ
>W1710608668
FXBB01000001
Synergistota
Dethiosulfovibrio salsuginis [FXBB]
245098
245174
+
Pro
GGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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