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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Synergistota
Anticodon = TAC
HIT:
15 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.658657 (11 seq.)
>WENV170008226
AMZC01005281
[AMZC] bioreactor sludge metagenome; anaerobic thermophilic cellulolytic sludge from lab reactor
1150
1224
+
Val
TAC
[ENA]
¢þ
>WENV170561534
CZCA01012879
[CZCA] anaerobic digester metagenome; anaerobic digester
1010
1084
+
Val
TAC
[ENA]
¢þ
>WENV170562823
CZCB01005732
[CZCB] anaerobic digester metagenome; anaerobic digester
1010
1084
+
Val
TAC
[ENA]
¢þ
>WENV170563429
CZCB01017675
[CZCB] anaerobic digester metagenome; anaerobic digester
2373
2447
+
Val
TAC
[ENA]
¢þ
>WENV170685652
LFRM01103005
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
888
814
-
Val
TAC
[ENA]
¢þ
>WENV170718816
LSQX01091600
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
3533
3607
+
Val
TAC
[ENA]
¢þ
>W09126627
ACJX01000176
Synergistota
Acetomicrobium hydrogeniformans ATCC BAA-1850 [ACJX]
15213
15139
-
Val
TAC
[ENA]
¡û
>WENV170968339
MTKW01008389
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
527
453
-
Val
TAC
[ENA]
¢þ
>C121008046
CP003198
Synergistota
Acetomicrobium mobile DSM 13181 [CP003198]
216731
216805
+
Val
TAC
[Ensembl]
¡û
>W1710530849
FNPD01000014
Synergistota
Acetomicrobium thermoterrenum DSM 13490 [FNPD]
32784
32710
-
Val
TAC
[ENA]
¡û
>W1710594075
FSQZ01000001
Synergistota
Acetomicrobium flavidum [FSQZ]
854999
854925
-
Val
TAC
[ENA]
¡û
Identical group No.674601 (9 seq.)
>W1711137611
LVBQ01000027
Synergistota
Synergistales bacterium Syner_03 [LVBQ]
30607
30681
+
Val
TAC
[ENA]
¡û
>W1712039353
NFJQ01000002
Synergistota
Cloacibacillus sp. An23 [NFJQ]
128145
128219
+
Val
TAC
[ENA]
¡û
>WENV180096977
MTBK01159519
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
295
369
+
Val
TAC
[ENA]
¢þ
>WENV180224018
OBBI01024341
[OBBI] human gut metagenome; human gut
20
94
+
Val
TAC
[ENA]
¢þ
>WENV182291862
OHVZ01041008
[OHVZ] human gut metagenome; feces
262
188
-
Val
TAC
[ENA]
¢þ
>WENV170657442
JTFO01152932
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
143
217
+
Val
TAC
[ENA]
¢þ
>WENV170686404
LFRM01142826
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
17402
17328
-
Val
TAC
[ENA]
¢þ
>WENV170978286
MTKZ01045906
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
236
162
-
Val
TAC
[ENA]
¢þ
>W1610948731
LVBQ01000027
Synergistota
Synergistales bacterium Syner_03 [LVBQ]
30607
30681
+
Val
TAC
[ENA]
¡û
Identical group No.676114 (4 seq.)
>W1711629536
MPPC01000004
Synergistota
Aminobacterium sp. EBM-42 [MPPC]
80879
80805
-
Val
TAC
[ENA]
¡û
>W141279026
JAFZ01000004
Synergistota
Aminobacterium mobile DSM 12262 [JAFZ]
85076
85002
-
Val
TAC
[ENA]
¡û
>WENV170720779
LSQX01166068
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
5496
5570
+
Val
TAC
[ENA]
¢þ
>C10100296
CP001997
Synergistota
Aminobacterium colombiense DSM 12261 [CP001997]
337023
337097
+
Val
TAC
[Ensembl]
¡û
Identical group No.676525 (17 seq.)
>C171050537
CP016757
Synergistota
Cloacibacillus porcorum CL-84 [CP016757]
1584025
1584099
+
Val
TAC
-
¡û
>WENV180274731
OBHE01025304
[OBHE] human gut metagenome; human gut
448
374
-
Val
TAC
[ENA]
¢þ
>WENV181908444
OGYB01000027
[OGYB] human gut metagenome; faeces
136132
136058
-
Val
TAC
[ENA]
¢þ
>WENV181915168
OGYF01003639
[OGYF] human gut metagenome; faeces
9083
9157
+
Val
TAC
[ENA]
¢þ
>WENV182031202
OHCS01005332
[OHCS] human gut metagenome; feces
134
60
-
Val
TAC
[ENA]
¢þ
>WENV182212722
OHQG01005066
[OHQG] human gut metagenome; feces
2957
3031
+
Val
TAC
[ENA]
¢þ
>WENV182216032
OHQM01013743
[OHQM] human gut metagenome; feces
1436
1362
-
Val
TAC
[ENA]
¢þ
>WENV182537976
OIXH01028019
[OIXH] human gut metagenome; faeces
1685
1759
+
Val
TAC
[ENA]
¢þ
>WENV183039650
OLGB01011383
[OLGB] human gut metagenome; faeces
2855
2781
-
Val
TAC
[ENA]
¢þ
>W141452026
JFBR01000002
Synergistota
Cloacibacillus evryensis DSM 19522 [JFBR]
209041
209115
+
Val
TAC
[ENA]
¡û
>W141701183
JMKI01000002
Synergistota
Synergistes jonesii [JMKI]
14514
14588
+
Val
TAC
[ENA]
¡û
>W121000482
ACUH01000050
Synergistota
Synergistes sp. 3_1_syn1 [ACUH]
10113
10187
+
Val
TAC
[ENA]
¡û
>W1710629226
JPZQ01000001
Synergistota
Synergistes jonesii [JPZQ]
12471
12545
+
Val
TAC
[ENA]
¡û
>W1710629269
JPZR01000001
Synergistota
Synergistes jonesii [JPZR]
12471
12545
+
Val
TAC
[ENA]
¡û
>W1710629312
JPZS01000001
Synergistota
Synergistes jonesii [JPZS]
12471
12545
+
Val
TAC
[ENA]
¡û
>W1710631852
JQEK01000047
Synergistota
Synergistes jonesii [JQEK]
172354
172280
-
Val
TAC
[ENA]
¡û
>W1710631860
JQEL01000001
Synergistota
Synergistes jonesii [JQEL]
12471
12545
+
Val
TAC
[ENA]
¡û
Identical group No.681962 (4 seq.)
>WENV183516307
OMKS01156339
[OMKS] sediment metagenome; hot spring sediment
117
43
-
Val
TAC
[ENA]
¢þ
>WENV170677179
LDZT01003492
[LDZT] terrestrial metagenome; oil reservoir sample SB1
82
8
-
Val
TAC
[ENA]
¢þ
>W1610613640
LGGB01000244
Synergistota
Synergistales bacterium 53_16 [LGGB]
82
8
-
Val
TAC
[ENA]
¡û
>W1710734812
LGGB01000244
Synergistota
Synergistales bacterium 53_16 [LGGB]
82
8
-
Val
TAC
[ENA]
¡û
Identical group No.691501 (17 seq.)
>W1711137577
LVBO01000648
Synergistota
Synergistales bacterium Syner_01 [LVBO]
1407
1481
+
Val
TAC
[ENA]
¡û
>WENV180731894
ODGW01031308
[ODGW] human metagenome; G_DNA_Supragingival plaque
341
267
-
Val
TAC
[ENA]
¢þ
>WENV180751856
ODHS01214636
[ODHS] human metagenome; G_DNA_Supragingival plaque
125
51
-
Val
TAC
[ENA]
¢þ
>WENV180789222
ODIS01335096
[ODIS] human metagenome; G_DNA_Supragingival plaque
94
168
+
Val
TAC
[ENA]
¢þ
>WENV180798227
ODJB01361483
[ODJB] human metagenome; G_DNA_Supragingival plaque
67
141
+
Val
TAC
[ENA]
¢þ
>WENV180810200
ODJK01152524
[ODJK] human metagenome; G_DNA_Subgingival plaque
226
152
-
Val
TAC
[ENA]
¢þ
>WENV180944643
ODUC01027292
[ODUC] human metagenome; G_DNA_Supragingival plaque
125
199
+
Val
TAC
[ENA]
¢þ
>WENV180982180
ODVE01193253
[ODVE] human metagenome; G_DNA_Supragingival plaque
124
198
+
Val
TAC
[ENA]
¢þ
>WENV181050709
ODYD01045969
[ODYD] human metagenome; G_DNA_Supragingival plaque
143
217
+
Val
TAC
[ENA]
¢þ
>WENV181081564
OEAS01261682
[OEAS] human metagenome; G_DNA_Supragingival plaque
131
205
+
Val
TAC
[ENA]
¢þ
>WENV181091996
OEBC01171813
[OEBC] human metagenome; G_DNA_Supragingival plaque
125
199
+
Val
TAC
[ENA]
¢þ
>WENV181182924
OEJV01079106
[OEJV] human metagenome; G_DNA_Supragingival plaque
140
214
+
Val
TAC
[ENA]
¢þ
>WENV183507945
OMGZ01001316
[OMGZ] human oral metagenome; human oral
503
429
-
Val
TAC
[ENA]
¢þ
>WENV170684590
LFRM01047651
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
3062
2988
-
Val
TAC
[ENA]
¢þ
>WENV170717726
LSQX01047364
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
351
277
-
Val
TAC
[ENA]
¢þ
>C161104047
FP929056
Synergistota
Fretibacterium fastidiosum SGP1 [FP929056]
945512
945438
-
Val
TAC
-
¡û
>W1610948697
LVBO01000648
Synergistota
Synergistales bacterium Syner_01 [LVBO]
1407
1481
+
Val
TAC
[ENA]
¡û
Identical group No.706764 (4 seq.)
>W1711744509
MUHX01000030
Synergistota
Pyramidobacter sp. C12-8 [MUHX]
4828
4902
+
Val
TAC
[ENA]
¡û
>WENV183764060
PPYE01312981
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
5842
5916
+
Val
TAC
[ENA]
¢þ
>W10113033
ADFP01000084
Synergistota
Pyramidobacter piscolens W5455 [ADFP]
4783
4857
+
Val
TAC
[ENA]
¡û
>W11116260
ADFP01000084
Synergistota
Pyramidobacter piscolens W5455 [ADFP]
4783
4857
+
Val
TAC
[ENA]
¡û
Identical group No.706865 (1 seq.)
>W11138617
AEIV01000002
Synergistota
Aminomonas paucivorans DSM 12260 [AEIV]
707592
707518
-
Val
TAC
[ENA]
¡û
Identical group No.714273 (3 seq.)
>W141146849
AWWC01000018
Synergistota
Jonquetella sp. BV3C21 [AWWC]
46115
46189
+
Val
TAC
[ENA]
¡û
>W09132951
ACOO02000017
Synergistota
Jonquetella anthropi E3_33 E1 [ACOO]
46348
46422
+
Val
TAC
[ENA]
¡û
>W121017478
AGRU01000003
Synergistota
Jonquetella anthropi DSM 22815 [AGRU]
51087
51161
+
Val
TAC
[ENA]
¡û
Identical group No.721549 (2 seq.)
>W131157315
AQRZ01000027
Synergistota
Synergistetes bacterium JGI 0000079-D21 [AQRZ]
1328
1254
-
Val
TAC
[ENA]
¡û
>WENV181230274
OFEK01000582
[OFEK] activated sludge metagenome; Anaerobic digester
25067
25141
+
Val
TAC
[ENA]
¢þ
Identical group No.752746 (4 seq.)
>WENV181409527
OGCI01000259
[OGCI] hot springs metagenome; Hot spring water
57189
57115
-
Val
TAC
[ENA]
¢þ
>W09110113
ABUW01000002
Synergistota
Thermanaerovibrio acidaminovorans DSM 6589 [ABUW]
10588
10662
+
Val
TAC
[ENA]
¡û
>C10112997
CP001818
Synergistota
Thermanaerovibrio acidaminovorans DSM 6589 [CP001818]
1573447
1573373
-
Val
TAC
[Ensembl]
¡û
>W121031610
AHGV01000001
Synergistota
Thermanaerovibrio velox DSM 12556 [AHGV]
297026
297100
+
Val
TAC
[ENA]
¡û
Identical group No.756739 (2 seq.)
>W141278941
JAFY01000005
Synergistota
Aminiphilus circumscriptus DSM 16581 [JAFY]
427738
427664
-
Val
TAC
[ENA]
¡û
>W1610945994
LUYG01000291
Euryarchaeota
Methanosarcinales archaeon Methan_03 [LUYG]
1042
968
-
Val
TAC
[ENA]
¡û
Identical group No.757414 (1 seq.)
>W09108891
ABTR01000001
Synergistota
Dethiosulfovibrio peptidovorans DSM 11002 [ABTR]
417042
416968
-
Val
TAC
[ENA]
¡û
Identical group No.761590 (1 seq.)
>W1710608702
FXBB01000019
Synergistota
Dethiosulfovibrio salsuginis [FXBB]
5348
5422
+
Val
TAC
[ENA]
¡û
Identical group No.772061 (1 seq.)
>C121005670
CP003096
Synergistota
Thermovirga lienii DSM 17291 [CP003096]
484021
484095
+
Val
TAC
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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