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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Tenericutes
Anticodon = GCA
HIT:
6 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.659618 (7 seq.)
>PL191001756
LR214964
Tenericutes
Mycoplasma fermentans NCTC10117 plasmid:10 (LR214964)
36581
36507
-
Cys
GCA
[ENA]
¡û
>PL191001817
LR215003
Tenericutes
Mycoplasma conjunctivae NCTC10147 plasmid:7 (LR215003)
549859
549785
-
Cys
GCA
[ENA]
¡û
>W1910002646
ATFG01000041
Mycoplasmatota
Mycoplasmopsis fermentans MF-I1 [ATFG]
14945
14871
-
Cys
GCA
[ENA]
¡û
>W1910002681
ATFH01000036
Mycoplasmatota
Mycoplasmopsis fermentans MF-I2 [ATFH]
14948
14874
-
Cys
GCA
[ENA]
¡û
>C09107659
AP009608
Mycoplasmatota
Mycoplasmopsis fermentans PG18 [AP009608]
583050
583124
+
Cys
GCA
[Ensembl]
¡û
>C11114244
CP001995
Mycoplasmatota
Mycoplasmopsis fermentans JER [CP001995]
807391
807317
-
Cys
GCA
[Ensembl]
¡û
>C11114279
CP002458
Mycoplasmatota
Mycoplasmopsis fermentans M64 [CP002458]
936117
936043
-
Cys
GCA
[Ensembl]
¡û
Identical group No.660079 (60 seq.)
>W131098154
AORG01000009
Mycoplasmatota
Mycoplasmopsis arginini 7264 [AORG]
56882
56808
-
Cys
GCA
[ENA]
¡û
>W131098228
AORI01000012
Mycoplasmatota
Metamycoplasma auris 15026 [AORI]
94659
94585
-
Cys
GCA
[ENA]
¡û
>W131182328
ARQG01000021
Mycoplasmatota
Metamycoplasma hominis ATCC 27545 [ARQG]
13872
13798
-
Cys
GCA
[ENA]
¡û
>W131211445
ATMU01000009
Chlamydiota
Chlamydia psittaci 02DC14 [ATMU]
117
43
-
Cys
GCA
[ENA]
¡û
>W131214582
ATUH01000006
Mycoplasmatota
Metamycoplasma orale ATCC 23714 [ATUH]
14116
14190
+
Cys
GCA
[ENA]
¡û
>W1711665615
MRAX01000023
Mycoplasmatota
Metamycoplasma hominis [MRAX]
61765
61691
-
Cys
GCA
[ENA]
¡û
>W1711665646
MRAY01000023
Mycoplasmatota
Metamycoplasma hominis [MRAY]
61951
61877
-
Cys
GCA
[ENA]
¡û
>W141051158
AMWK01000006
Mycoplasmatota
Metamycoplasma alkalescens 14918 [AMWK]
155373
155299
-
Cys
GCA
[ENA]
¡û
>WENV180883872
ODMC01019559
[ODMC] human metagenome; G_DNA_Tongue dorsum
244
170
-
Cys
GCA
[ENA]
¢þ
>WENV180900283
ODOJ01000931
[ODOJ] human metagenome; G_DNA_Tongue dorsum
14886
14812
-
Cys
GCA
[ENA]
¢þ
>WENV180932576
ODTP01094186
[ODTP] human metagenome; G_DNA_Tongue dorsum
342
268
-
Cys
GCA
[ENA]
¢þ
>WENV180950581
ODUH01000199
[ODUH] human metagenome; G_DNA_Subgingival plaque
17178
17104
-
Cys
GCA
[ENA]
¢þ
>WENV181075006
OEAO01052822
[OEAO] human metagenome; G_DNA_Tongue dorsum
218
144
-
Cys
GCA
[ENA]
¢þ
>WENV181113568
OEEL01041626
[OEEL] human metagenome; G_DNA_Tongue dorsum
113
39
-
Cys
GCA
[ENA]
¢þ
>WENV181178523
OEJT01000043
[OEJT] human metagenome; G_DNA_Supragingival plaque
26589
26663
+
Cys
GCA
[ENA]
¢þ
>W141170951
AXZE01000009
Mycoplasmatota
Metamycoplasma salivarium ATCC 23064 [AXZE]
13989
14063
+
Cys
GCA
[ENA]
¡û
>PL191001687
LR214939
Tenericutes
Mycoplasma salivarium NCTC10113 plasmid:2 (LR214939)
618403
618477
+
Cys
GCA
[ENA]
¡û
>C181131007
CP026341
Mycoplasmatota
Metamycoplasma hominis [CP026341]
558652
558578
-
Cys
GCA
-
¡û
>C181176680
CP029295
Mycoplasmatota
[Mycoplasma] phocae 105 [CP029295]
629425
629351
-
Cys
GCA
-
¡û
>C191095649
CP032849
Mycoplasmatota
Metamycoplasma hominis PX1114 [CP032849]
529833
529759
-
Cys
GCA
-
¡û
>C191098206
CP033021
Mycoplasmatota
Metamycoplasma hominis TO0613 [CP033021]
594212
594138
-
Cys
GCA
-
¡û
>C191099499
CP033058
Mycoplasmatota
Metamycoplasma phocicerebrale 1049 [CP033058]
111413
111339
-
Cys
GCA
-
¡û
>C191118044
CP034044
Mycoplasmatota
Mycoplasma struthionis 237IA [CP034044]
282419
282493
+
Cys
GCA
-
¡û
>C191218025
LR214940
Mycoplasmatota
Metamycoplasma orale NCTC10112 [LR214940]
361961
361887
-
Cys
GCA
-
¡û
>C191218739
LR215044
Mycoplasmatota
Mycoplasmopsis arginini NCTC10129 [LR215044]
5458
5532
+
Cys
GCA
-
¡û
>C191224746
LS991949
Mycoplasmatota
Metamycoplasma alkalescens NCTC10135 [LS991949]
5427
5501
+
Cys
GCA
-
¡û
>W1910236644
FPIG01000020
Chlamydiota
Chlamydia abortus AB7 [FPIG]
4476
4402
-
Cys
GCA
[ENA]
¡û
>W1910237995
FPLQ01000003
Chlamydiota
Chlamydia abortus C2_98 [FPLQ]
45409
45335
-
Cys
GCA
[ENA]
¡û
>W1910238576
FPMH01000003
Mycoplasmatota
Mycoplasmopsis arginini C10_98 [FPMH]
45358
45284
-
Cys
GCA
[ENA]
¡û
>W1910238687
FPMJ01000004
Chlamydiota
Chlamydia abortus 99DC4 [FPMJ]
39796
39870
+
Cys
GCA
[ENA]
¡û
>W1910238941
FPMR01000002
Mycoplasmatota
Mycoplasmopsis arginini C7_98 [FPMR]
39820
39894
+
Cys
GCA
[ENA]
¡û
>W1910239056
FPMT01000283
Chlamydiota
Chlamydia abortus C20_98 [FPMT]
271
345
+
Cys
GCA
[ENA]
¡û
>W1910239129
FPMU01000127
Chlamydiota
Chlamydia abortus 03DC36 [FPMU]
425
499
+
Cys
GCA
[ENA]
¡û
>W1910281342
FQTM01000097
Chlamydiota
Chlamydia abortus 162STDY5437294 [FQTM]
14028
14102
+
Cys
GCA
[ENA]
¡û
>W1810585948
QFDN01000008
Mycoplasmatota
Mycoplasmopsis arginini NGR_2017 [QFDN]
39855
39929
+
Cys
GCA
[ENA]
¡û
>W1810657067
QJGS01000002
Mycoplasmatota
Metamycoplasma phocicerebrale 1049 [QJGS]
106899
106825
-
Cys
GCA
[ENA]
¡û
>W1810675896
QKLP01000007
Mycoplasmatota
Metamycoplasma alkalescens ATCC 29103 [QKLP]
33563
33637
+
Cys
GCA
[ENA]
¡û
>W1810682365
QKUB01000001
Mycoplasmatota
Metamycoplasma auris ATCC 51348 [QKUB]
27846
27920
+
Cys
GCA
[ENA]
¡û
>W1810706274
QMJZ01000026
Mycoplasmatota
Metamycoplasma hominis MH529 [QMJZ]
61753
61679
-
Cys
GCA
[ENA]
¡û
>W1810707432
QNHH01000016
Mycoplasmatota
Metamycoplasma hominis MH1019 [QNHH]
61728
61654
-
Cys
GCA
[ENA]
¡û
>W1810707463
QNHI01000020
Mycoplasmatota
Metamycoplasma hominis MH1002 [QNHI]
50631
50557
-
Cys
GCA
[ENA]
¡û
>W1810707494
QNHJ01000012
Mycoplasmatota
Metamycoplasma hominis MH621 [QNHJ]
61766
61692
-
Cys
GCA
[ENA]
¡û
>W1810735558
QOKN01000017
Mycoplasmatota
Metamycoplasma hominis MH1861 [QOKN]
120693
120619
-
Cys
GCA
[ENA]
¡û
>W1810735590
QOKO01000015
Mycoplasmatota
Metamycoplasma hominis MH1866 [QOKO]
61729
61655
-
Cys
GCA
[ENA]
¡û
>W1810735621
QOKP01000018
Mycoplasmatota
Metamycoplasma hominis MH1991 [QOKP]
61727
61653
-
Cys
GCA
[ENA]
¡û
>W1810735651
QOKQ01000014
Mycoplasmatota
Metamycoplasma hominis MH1817 [QOKQ]
95125
95051
-
Cys
GCA
[ENA]
¡û
>C151002631
AP014631
Mycoplasmatota
Metamycoplasma canadense HAZ360_1 [AP014631]
224004
224078
+
Cys
GCA
[Ensembl]
¡û
>C151056707
CP009652
Mycoplasmatota
Metamycoplasma hominis ATCC 27545 LBD-4 [CP009652]
541999
541925
-
Cys
GCA
[Ensembl]
¡û
>C151056780
CP009677
Mycoplasmatota
Metamycoplasma hominis AF1 [CP009677]
514277
514351
+
Cys
GCA
-
¡û
>C151084308
CP011538
Mycoplasmatota
Metamycoplasma hominis Sprott [CP011538]
513132
513058
-
Cys
GCA
[Ensembl]
¡û
>W1510644527
CVNN01000315
Chlamydiota
Chlamydia trachomatis R3059IMS [CVNN]
121
47
-
Cys
GCA
[ENA]
¡û
>W1510644833
CVNU01000015
Chlamydiota
Chlamydia trachomatis R36176extract [CVNU]
6060
5986
-
Cys
GCA
[ENA]
¡û
>W1510644880
CVNV01000005
Chlamydiota
Chlamydia trachomatis R3059extract [CVNV]
2983
3057
+
Cys
GCA
[ENA]
¡û
>W1511346471
JRHE01000011
Mycoplasmatota
Metamycoplasma hominis H34 [JRHE]
13658
13584
-
Cys
GCA
[ENA]
¡û
>W1511346488
JRHF01000006
Mycoplasmatota
Metamycoplasma hominis TOA [JRHF]
150922
150996
+
Cys
GCA
[ENA]
¡û
>W1511358373
JRWZ01000009
Mycoplasmatota
Metamycoplasma hominis AF3 [JRWZ]
13535
13461
-
Cys
GCA
[ENA]
¡û
>W1511358402
JRXA01000009
Mycoplasmatota
Metamycoplasma hominis PL5 [JRXA]
13534
13460
-
Cys
GCA
[ENA]
¡û
>W1511457727
JVIN01000013
Mycoplasmatota
Metamycoplasma hominis 403_MHOM [JVIN]
18299
18225
-
Cys
GCA
[ENA]
¡û
>W1511458245
JVJC01000041
Mycoplasmatota
Metamycoplasma hominis 387_MHOM [JVJC]
80114
80188
+
Cys
GCA
[ENA]
¡û
>C161000989
AP014657
Mycoplasmatota
Mycoplasmopsis arginini HAZ145_1 [AP014657]
494419
494493
+
Cys
GCA
[Ensembl]
¡û
Identical group No.676508 (4 seq.)
>PL191001847
LR215032
Tenericutes
Mycoplasma gallopavonis NCTC10186 plasmid:2 (LR215032)
10942
11016
+
Cys
GCA
[ENA]
¡û
>C191218449
LR215024
Mycoplasmatota
Mycoplasmopsis glycophila NCTC10194 [LR215024]
769723
769797
+
Cys
GCA
-
¡û
>W141561105
JHYE01000003
Mycoplasmatota
Mycoplasmopsis glycophila ATCC 35277 [JHYE]
37820
37894
+
Cys
GCA
[ENA]
¡û
>W1911768475
QXGN01000071
Mycoplasmatota
Mycoplasmopsis gallopavonis WR1 [QXGN]
260
334
+
Cys
GCA
[ENA]
¡û
Identical group No.697128 (2 seq.)
>PL191001786
LR214986
Tenericutes
Mycoplasma cynos NCTC10142 plasmid:13 (LR214986)
559611
559537
-
Cys
GCA
[ENA]
¡û
>C151099852
HF559394
Mycoplasmatota
Mycoplasmopsis cynos C142 [HF559394]
535933
535859
-
Cys
GCA
[Ensembl]
¡û
Identical group No.782378 (8 seq.)
>W131185079
ARTL01000012
Mycoplasmatota
Mesomycoplasma hyorhinis ATCC 17981 [ARTL]
27628
27701
+
Cys
GCA
[ENA]
¡û
>C171051533
CP016817
Mycoplasmatota
Mesomycoplasma hyorhinis MDBK-IPV [CP016817]
451148
451075
-
Cys
GCA
-
¡û
>PL191001740
LR214949
Tenericutes
Mycoplasma hyorhinis NCTC10121 plasmid:3 (LR214949)
454641
454568
-
Cys
GCA
[ENA]
¡û
>C191224781
LS991950
Mycoplasmatota
Mesomycoplasma hyorhinis NCTC10130 [LS991950]
295704
295777
+
Cys
GCA
-
¡û
>C141009345
CP006849
Mycoplasmatota
Mesomycoplasma hyorhinis DBS 1050 [CP006849]
451247
451174
-
Cys
GCA
[Ensembl]
¡û
>C10109437
CP002170
Mycoplasmatota
Mesomycoplasma hyorhinis HUB-1 [CP002170]
292722
292795
+
Cys
GCA
[Ensembl]
¡û
>C11114521
CP002669
Mycoplasmatota
Mesomycoplasma hyorhinis MCLD [CP002669]
184006
183933
-
Cys
GCA
[Ensembl]
¡û
>C121009172
CP003231
Mycoplasmatota
Mesomycoplasma hyorhinis GDL-1 [CP003231]
451264
451191
-
Cys
GCA
[Ensembl]
¡û
Identical group No.786852 (2 seq.)
>PL191000231
CP017949
Tenericutes
Tenericutes bacterium MO-XQ plasmid:unnamed (CP017949)
14671
14744
+
Cys
GCA
[ENA]
¡û
>C181029243
CP017950
Mycoplasmatota
Tenericutes bacterium MZ-XQ [CP017950]
1584651
1584578
-
Cys
GCA
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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