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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
Anticodon = TCA
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.2052 (1 seq.)
>SRA1003144
SRR002326.240877
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
123
218
+
SeC
TCA
[SRA]
Identical group No.2305 (1 seq.)
>SRA1003663
SRR002327.104193
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
181
89
-
SeC
TCA
[SRA]
Identical group No.585241 (1 seq.)
>SRA1004049
SRR002328.115618
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
59
131
+
SeC
TCA
[SRA]
Identical group No.685998 (1 seq.)
>SRA1003118
SRR002326.212700
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
186
115
-
SeC
TCA
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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