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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Unclassified
Anticodon = CAA
HIT:
14 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.60140 (1 seq.)
>A171000315
CP000968
Unclassified
Candidatus Korarchaeum cryptofilum OPF8 [CP000968]
1347074
1346987
-
Leu
CAA
-
¡û
Identical group No.91056 (7 seq.)
>A171003632
CP004145
Unclassified
Ferroplasma acidarmanus Fer1 [CP004145]
1402911
1402827
-
Leu
CAA
-
¡û
>A171006636
CP015363
Unclassified
Ferroplasma acidiphilum Y [CP015363]
377112
377027
-
Leu
CAA
-
¡û
>W141000055
AADL01001151
Unclassified
mine drainage metagenome Group III [AADL]
715
628
-
Leu
CAA
[ENA]
¡û
>W141000069
AADL01001483
Unclassified
mine drainage metagenome Group III [AADL]
63562
63646
+
Leu
CAA
[ENA]
¡û
>W1610000078
AABC05000014
Unclassified
Ferroplasma acidarmanus fer1 [AABC]
58793
58706
-
Leu
CAA
[ENA]
¡û
>WENV077063
AADL01001151
Acid Mine Drainage microbial communities from Richmond mine
715
628
-
Leu
CAA
[ENA]
>WENV077077
AADL01001483
Acid Mine Drainage microbial communities from Richmond mine
63562
63649
+
Leu
CAA
[ENA]
Identical group No.91062 (4 seq.)
>A171007735
LT671858
Unclassified
Cuniculiplasma divulgatum S5(T) [LT671858]
843999
844083
+
Leu
CAA
-
¡û
>A171007772
LT719092
Unclassified
Cuniculiplasma divulgatum PM4 [LT719092]
846458
846542
+
Leu
CAA
-
¡û
>W141000103
AADL01001626
Unclassified
mine drainage metagenome Group III [AADL]
1550
1634
+
Leu
CAA
[ENA]
¡û
>WENV077111
AADL01001626
Acid Mine Drainage microbial communities from Richmond mine
1550
1637
+
Leu
CAA
[ENA]
Identical group No.95684 (4 seq.)
>A171001366
CP001941
Unclassified
Aciduliprofundum boonei T469 [CP001941]
1466456
1466372
-
Leu
CAA
-
¡û
>A171002877
CP003168
Unclassified
Aciduliprofundum sp. MAR08-339 [CP003168]
1420052
1419968
-
Leu
CAA
-
¡û
>W1610000671
ABSD01000038
Unclassified
Candidatus Aciduliprofundum boonei T469 [ABSD]
71644
71728
+
Leu
CAA
[ENA]
¡û
>W1610001683
ADFG01000001
Unclassified
Candidatus Aciduliprofundum boonei T469 [ADFG]
11704
11620
-
Leu
CAA
[ENA]
¡û
Identical group No.97691 (1 seq.)
>At2020
BA000011
Unclassified
Thermoplasma volcanium GSS1 [BA000011]
1139566
1139650
+
Leu
CAA
[Ensembl]
¡û
Identical group No.100829 (2 seq.)
>At1771
AE017261
Unclassified
Picrophilus oshimae DSM 9789 DSM 9790 [AE017261]
948816
948732
-
Leu
CAA
[Ensembl]
¡û
>W1910469075
FWYE01000001
Unclassified
Picrophilus oshimae DSM 9789 [FWYE]
28449
28533
+
Leu
CAA
[ENA]
¡û
Identical group No.103057 (2 seq.)
>At1975
AL139299
Unclassified
Thermoplasma acidophilum [AL139299]
1008253
1008337
+
Leu
CAA
[Ensembl]
¡û
>W1911681171
QJSM01000026
Unclassified
Thermoplasma sp. Kam2015 [QJSM]
27803
27890
+
Leu
CAA
[ENA]
¡û
Identical group No.111566 (1 seq.)
>A171005716
CP010070
Unclassified
Candidatus Methanoplasma termitum MpT1 [CP010070]
165134
165219
+
Leu
CAA
-
¡û
Identical group No.113063 (1 seq.)
>A17A001022
CP005934
Unclassified
Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1 [CP005934]
1408779
1408889
+
Leu
CAA
-
¡û
Identical group No.154096 (13 seq.)
>A171003513
CP004049
Unclassified
Candidatus Methanomethylophilus alvi Mx1201 [CP004049]
313036
313121
+
Leu
CAA
-
¡û
>WENV180326783
OBKS01173228
[OBKS] human gut metagenome; human gut
206
121
-
Leu
CAA
[ENA]
¢þ
>WENV180341409
OBLI01123062
[OBLI] pig gut metagenome; faeces
452
537
+
Leu
CAA
[ENA]
¢þ
>WENV181606931
OGLM01001891
[OGLM] metagenome; Human gut stool
12818
12903
+
Leu
CAA
[ENA]
¢þ
>WENV181655701
OGOB01000603
[OGOB] metagenome; Human gut stool
7734
7649
-
Leu
CAA
[ENA]
¢þ
>WENV181772401
OGRD01002616
[OGRD] human gut metagenome; faeces
5114
5029
-
Leu
CAA
[ENA]
¢þ
>WENV182524633
OIWT01000408
[OIWT] human gut metagenome; faeces
22287
22372
+
Leu
CAA
[ENA]
¢þ
>WENV183045411
OLGE01010689
[OLGE] human gut metagenome; faeces
2668
2753
+
Leu
CAA
[ENA]
¢þ
>WENV183382910
OLYL01031630
[OLYL] human gut metagenome; feces
364
279
-
Leu
CAA
[ENA]
¢þ
>WENV183409854
OMAG01012406
[OMAG] human gut metagenome; feces
860
775
-
Leu
CAA
[ENA]
¢þ
>WENV183439093
OMCF01031630
[OMCF] human gut metagenome; feces
364
279
-
Leu
CAA
[ENA]
¢þ
>WENV183517634
OMNP01006161
[OMNP] human gut metagenome; feces
320
405
+
Leu
CAA
[ENA]
¢þ
>W1610011047
AMSE01000004
Unclassified
Methanomethylophilus alvi alvus Mx1201 [AMSE]
89992
89907
-
Leu
CAA
[ENA]
¡û
Identical group No.167862 (1 seq.)
>A171002525
CP002916
Unclassified
Thermoplasmatales archaeon BRNA1 [CP002916]
370349
370434
+
Leu
CAA
-
¡û
Identical group No.191741 (3 seq.)
>A171006524
CP014214
Unclassified
methanogenic archaeon ISO4-H5 [CP014214]
1527704
1527620
-
Leu
CAA
-
¡û
>WENV180670527
OCVV011303229
[OCVV] gut metagenome; gut
1006
922
-
Leu
CAA
[ENA]
¢þ
>WENV180670528
OCVV011303229
[OCVV] gut metagenome; gut
1006
922
-
Leu
CAA
[ENA]
¢þ
Identical group No.551766 (1 seq.)
>A17A000790
CP003168
Unclassified
Aciduliprofundum sp. MAR08-339 [CP003168]
253637
253757
+
Leu
CAA
-
¡û
Identical group No.585686 (1 seq.)
>A17A000360
CP001941
Unclassified
Aciduliprofundum boonei T469 [CP001941]
738958
738832
-
Leu
CAA
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK