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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Unclassified
Anticodon = CTC
HIT:
12 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.245175 (5 seq.)
>A171007743
LT671858
Unclassified
Cuniculiplasma divulgatum S5(T) [LT671858]
1327545
1327619
+
Glu
CTC
-
¡û
>A171007780
LT719092
Unclassified
Cuniculiplasma divulgatum PM4 [LT719092]
1329125
1329199
+
Glu
CTC
-
¡û
>W141000101
AADL01001619
Unclassified
mine drainage metagenome Group III [AADL]
2660
2734
+
Glu
CTC
[ENA]
¡û
>ENV09002172
ACXJ01010700
Mine drainage metagenome Contig1
1995
1921
-
Glu
CTC
[ENA]
¡û
>WENV077109
AADL01001619
Acid Mine Drainage microbial communities from Richmond mine
2660
2737
+
Glu
CTC
[ENA]
Identical group No.248015 (6 seq.)
>At1988
AL139299
Unclassified
Thermoplasma acidophilum [AL139299]
148300
148226
-
Glu
CTC
[Ensembl]
¡û
>At2030
BA000011
Unclassified
Thermoplasma volcanium GSS1 [BA000011]
226360
226286
-
Glu
CTC
[Ensembl]
¡û
>W1630002066
BBDK01000025
Unclassified
Acidiplasma cupricumulans JCM 13668 [BBDK]
22055
22129
+
Pseudo
CTC
[ENA]
¡û
>W1630011601
LJCQ01000277
Unclassified
Acidiplasma aeolicum V [LJCQ]
1783
1709
-
Pseudo
CTC
[ENA]
¡û
>W1630012176
LKBG01000267
Unclassified
Acidiplasma aeolicum VT [LKBG]
1784
1858
+
Pseudo
CTC
[ENA]
¡û
>W1630012183
LKBH01000050
Unclassified
Acidiplasma cupricumulans BH2 [LKBH]
3642
3716
+
Pseudo
CTC
[ENA]
¡û
Identical group No.250760 (4 seq.)
>A171001360
CP001941
Unclassified
Aciduliprofundum boonei T469 [CP001941]
1143988
1144063
+
Glu
CTC
-
¡û
>W1610000638
ABSD01000005
Unclassified
Candidatus Aciduliprofundum boonei T469 [ABSD]
77083
77160
+
Glu
CTC
[ENA]
¡û
>W1610000665
ABSD01000035
Unclassified
Candidatus Aciduliprofundum boonei T469 [ABSD]
74998
75075
+
Glu
CTC
[ENA]
¡û
>W1610001701
ADFG01000017
Unclassified
Candidatus Aciduliprofundum boonei T469 [ADFG]
11148
11225
+
Glu
CTC
[ENA]
¡û
Identical group No.254658 (1 seq.)
>A171002880
CP003168
Unclassified
Aciduliprofundum sp. MAR08-339 [CP003168]
1264807
1264732
-
Glu
CTC
-
¡û
Identical group No.256440 (1 seq.)
>A171000326
CP000968
Unclassified
Candidatus Korarchaeum cryptofilum OPF8 [CP000968]
1008933
1008859
-
Glu
CTC
-
¡û
Identical group No.256674 (2 seq.)
>At1744
AE017261
Unclassified
Picrophilus oshimae DSM 9789 DSM 9790 [AE017261]
904112
904186
+
Glu
CTC
[Ensembl]
¡û
>W1910469093
FWYE01000001
Unclassified
Picrophilus oshimae DSM 9789 [FWYE]
73137
73063
-
Glu
CTC
[ENA]
¡û
Identical group No.268361 (1 seq.)
>C151068547
CP010424
Unclassified
archaeon GW2011_AR10 [CP010424]
719101
719176
+
Glu
CTC
-
¡û
Identical group No.452698 (2 seq.)
>A173000134
CP004049
Unclassified
Candidatus Methanomethylophilus alvi Mx1201 [CP004049]
1318592
1318519
-
Glu
CTC
-
¡û
>W1630000473
AMSE01000005
Unclassified
Methanomethylophilus alvi alvus Mx1201 [AMSE]
657576
657649
+
Glu
CTC
[ENA]
¡û
Identical group No.456282 (8 seq.)
>A171003703
CP005934
Unclassified
Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1 [CP005934]
1481497
1481570
+
Glu
CTC
-
¡û
>WENV180963167
ODUN01077554
[ODUN] human metagenome; G_DNA_Stool
286
359
+
Glu
CTC
[ENA]
¢þ
>WENV180963563
ODUN01252254
[ODUN] human metagenome; G_DNA_Stool
100
173
+
Glu
CTC
[ENA]
¢þ
>WENV181035837
ODXP01000015
[ODXP] human metagenome; G_DNA_Stool
134193
134120
-
Glu
CTC
[ENA]
¢þ
>WENV181088961
OEBA01008730
[OEBA] human metagenome; G_DNA_Stool
848
921
+
Glu
CTC
[ENA]
¢þ
>WENV182535781
OIXH01000001
[OIXH] human gut metagenome; faeces
319601
319674
+
Glu
CTC
[ENA]
¢þ
>WENV183038992
OLGB01002328
[OLGB] human gut metagenome; faeces
10274
10201
-
Glu
CTC
[ENA]
¢þ
>WENV183040426
OLGD01000006
[OLGD] human gut metagenome; faeces
319600
319673
+
Glu
CTC
[ENA]
¢þ
Identical group No.513973 (3 seq.)
>A171005743
CP010070
Unclassified
Candidatus Methanoplasma termitum MpT1 [CP010070]
838719
838646
-
Glu
CTC
-
¡û
>WENV180658173
OCVV010737628
[OCVV] gut metagenome; gut
1354
1281
-
Glu
CTC
[ENA]
¢þ
>WENV180658174
OCVV010737628
[OCVV] gut metagenome; gut
1354
1281
-
Glu
CTC
[ENA]
¢þ
Identical group No.514531 (8 seq.)
>A171002550
CP002916
Unclassified
Thermoplasmatales archaeon BRNA1 [CP002916]
1163094
1163021
-
Glu
CTC
-
¡û
>A171006508
CP014214
Unclassified
methanogenic archaeon ISO4-H5 [CP014214]
307364
307437
+
Glu
CTC
-
¡û
>WENV180664459
OCVV011157976
[OCVV] gut metagenome; gut
1093
1020
-
Glu
CTC
[ENA]
¢þ
>WENV180664460
OCVV011157976
[OCVV] gut metagenome; gut
1093
1020
-
Glu
CTC
[ENA]
¢þ
>WENV180669231
OCVV011277360
[OCVV] gut metagenome; gut
292
219
-
Glu
CTC
[ENA]
¢þ
>WENV180669232
OCVV011277360
[OCVV] gut metagenome; gut
292
219
-
Glu
CTC
[ENA]
¢þ
>WENV180681813
OCVV012803478
[OCVV] gut metagenome; gut
173
246
+
Glu
CTC
[ENA]
¢þ
>WENV180681814
OCVV012803478
[OCVV] gut metagenome; gut
173
246
+
Glu
CTC
[ENA]
¢þ
Identical group No.775534 (1 seq.)
>C151068557
CP010426
Unclassified
archaeon GW2011_AR20 [CP010426]
302172
302243
+
Glu
CTC
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK