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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Unclassified
Anticodon = GAG
HIT:
11 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.60139 (1 seq.)
>A171000305
CP000968
Unclassified
Candidatus Korarchaeum cryptofilum OPF8 [CP000968]
1559593
1559680
+
Leu
GAG
-
¡û
Identical group No.91331 (3 seq.)
>A171007747
LT671858
Unclassified
Cuniculiplasma divulgatum S5(T) [LT671858]
1927518
1927433
-
Leu
GAG
-
¡û
>A171007784
LT719092
Unclassified
Cuniculiplasma divulgatum PM4 [LT719092]
1867735
1867650
-
Leu
GAG
-
¡û
>ENV09002101
ACXJ01009672
Mine drainage metagenome Contig1
2649
2562
-
Leu
GAG
[ENA]
¡û
Identical group No.95683 (5 seq.)
>A171001358
CP001941
Unclassified
Aciduliprofundum boonei T469 [CP001941]
860474
860559
+
Leu
GAG
-
¡û
>A171002893
CP003168
Unclassified
Aciduliprofundum sp. MAR08-339 [CP003168]
99196
99111
-
Leu
GAG
-
¡û
>W1610000657
ABSD01000027
Unclassified
Candidatus Aciduliprofundum boonei T469 [ABSD]
20393
20480
+
Leu
GAG
[ENA]
¡û
>W1610000676
ABSD01000040
Unclassified
Candidatus Aciduliprofundum boonei T469 [ABSD]
21824
21911
+
Leu
GAG
[ENA]
¡û
>W1610001696
ADFG01000010
Unclassified
Candidatus Aciduliprofundum boonei T469 [ADFG]
36892
36979
+
Leu
GAG
[ENA]
¡û
Identical group No.97692 (3 seq.)
>At1987
AL139299
Unclassified
Thermoplasma acidophilum [AL139299]
15112
15028
-
Leu
GAG
[Ensembl]
¡û
>At2027
BA000011
Unclassified
Thermoplasma volcanium GSS1 [BA000011]
63598
63514
-
Leu
GAG
[Ensembl]
¡û
>W1911681159
QJSM01000002
Unclassified
Thermoplasma sp. Kam2015 [QJSM]
9264
9350
+
Leu
GAG
[ENA]
¡û
Identical group No.100827 (2 seq.)
>At1742
AE017261
Unclassified
Picrophilus oshimae DSM 9789 DSM 9790 [AE017261]
861295
861379
+
Leu
GAG
[Ensembl]
¡û
>W1910469091
FWYE01000001
Unclassified
Picrophilus oshimae DSM 9789 [FWYE]
115950
115866
-
Leu
GAG
[ENA]
¡û
Identical group No.110526 (1 seq.)
>C151068543
CP010424
Unclassified
archaeon GW2011_AR10 [CP010424]
182649
182735
+
Leu
GAG
-
¡û
Identical group No.112918 (11 seq.)
>A171003514
CP004049
Unclassified
Candidatus Methanomethylophilus alvi Mx1201 [CP004049]
389255
389341
+
Leu
GAG
-
¡û
>WENV180326264
OBKS01047278
[OBKS] human gut metagenome; human gut
924
1010
+
Leu
GAG
[ENA]
¢þ
>WENV181606389
OGLM01000182
[OGLM] metagenome; Human gut stool
39635
39549
-
Leu
GAG
[ENA]
¢þ
>WENV181655771
OGOB01001066
[OGOB] metagenome; Human gut stool
8736
8650
-
Leu
GAG
[ENA]
¢þ
>WENV181772708
OGRD01012860
[OGRD] human gut metagenome; faeces
1528
1442
-
Leu
GAG
[ENA]
¢þ
>WENV182525493
OIWT01002582
[OIWT] human gut metagenome; faeces
11006
10920
-
Leu
GAG
[ENA]
¢þ
>WENV183045448
OLGE01011447
[OLGE] human gut metagenome; faeces
3499
3585
+
Leu
GAG
[ENA]
¢þ
>WENV183382739
OLYL01011543
[OLYL] human gut metagenome; feces
1371
1457
+
Leu
GAG
[ENA]
¢þ
>WENV183438922
OMCF01011543
[OMCF] human gut metagenome; feces
1371
1457
+
Leu
GAG
[ENA]
¢þ
>WENV183517968
OMNP01036617
[OMNP] human gut metagenome; feces
643
557
-
Leu
GAG
[ENA]
¢þ
>W1610011048
AMSE01000004
Unclassified
Methanomethylophilus alvi alvus Mx1201 [AMSE]
13773
13687
-
Pseudo
GAG
[ENA]
¡û
Identical group No.113051 (9 seq.)
>A171003698
CP005934
Unclassified
Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1 [CP005934]
648131
648217
+
Leu
GAG
-
¡û
>WENV181035825
ODXP01000012
[ODXP] human metagenome; G_DNA_Stool
7791
7877
+
Leu
GAG
[ENA]
¢þ
>WENV181088736
OEBA01004336
[OEBA] human metagenome; G_DNA_Stool
335
421
+
Leu
GAG
[ENA]
¢þ
>WENV181702259
OGPH01038792
[OGPH] human gut metagenome; faeces
662
748
+
Leu
GAG
[ENA]
¢þ
>WENV182082280
OHGK01056704
[OHGK] human gut metagenome; feces
252
338
+
Leu
GAG
[ENA]
¢þ
>WENV182220141
OHQR01050019
[OHQR] human gut metagenome; feces
111
197
+
Leu
GAG
[ENA]
¢þ
>WENV182536101
OIXH01000171
[OIXH] human gut metagenome; faeces
75584
75498
-
Leu
GAG
[ENA]
¢þ
>WENV183039286
OLGB01005038
[OLGB] human gut metagenome; faeces
2094
2008
-
Leu
GAG
[ENA]
¢þ
>WENV183041201
OLGD01000452
[OLGD] human gut metagenome; faeces
8537
8623
+
Leu
GAG
[ENA]
¢þ
Identical group No.124615 (3 seq.)
>A171002526
CP002916
Unclassified
Thermoplasmatales archaeon BRNA1 [CP002916]
440302
440388
+
Leu
GAG
-
¡û
>WENV180669149
OCVV011275938
[OCVV] gut metagenome; gut
7
93
+
Leu
GAG
[ENA]
¢þ
>WENV180669150
OCVV011275938
[OCVV] gut metagenome; gut
7
93
+
Leu
GAG
[ENA]
¢þ
Identical group No.124661 (3 seq.)
>A171006525
CP014214
Unclassified
methanogenic archaeon ISO4-H5 [CP014214]
1465222
1465136
-
Leu
GAG
-
¡û
>WENV180672865
OCVV011334291
[OCVV] gut metagenome; gut
264
180
-
Leu
GAG
[ENA]
¢þ
>WENV180672866
OCVV011334291
[OCVV] gut metagenome; gut
264
180
-
Leu
GAG
[ENA]
¢þ
Identical group No.152464 (1 seq.)
>A171005719
CP010070
Unclassified
Candidatus Methanoplasma termitum MpT1 [CP010070]
386295
386379
+
Leu
GAG
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK