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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Unclassified
Anticodon = TGA
HIT:
16 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.60138 (1 seq.)
>A171000303
CP000968
Unclassified
Candidatus Korarchaeum cryptofilum OPF8 [CP000968]
1471112
1471199
+
Ser
TGA
-
¡û
Identical group No.79482 (1 seq.)
>A171002876
CP003168
Unclassified
Aciduliprofundum sp. MAR08-339 [CP003168]
1296730
1296817
+
Ser
TGA
-
¡û
Identical group No.80381 (2 seq.)
>A171001359
CP001941
Unclassified
Aciduliprofundum boonei T469 [CP001941]
1062019
1062105
+
Ser
TGA
-
¡û
>W1610001690
ADFG01000007
Unclassified
Candidatus Aciduliprofundum boonei T469 [ADFG]
24476
24562
+
Ser
TGA
[ENA]
¡û
Identical group No.87382 (7 seq.)
>A171003714
CP005934
Unclassified
Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1 [CP005934]
1089232
1089145
-
Ser
TGA
-
¡û
>WENV180620458
OCQB01088137
[OCQB] human gut metagenome; human gut
345
432
+
Ser
TGA
[ENA]
¢þ
>WENV181035966
ODXP01000088
[ODXP] human metagenome; G_DNA_Stool
101276
101189
-
Ser
TGA
[ENA]
¢þ
>WENV181088930
OEBA01007657
[OEBA] human metagenome; G_DNA_Stool
47
134
+
Ser
TGA
[ENA]
¢þ
>WENV182535978
OIXH01000063
[OIXH] human gut metagenome; faeces
56971
57058
+
Ser
TGA
[ENA]
¢þ
>WENV183039436
OLGB01007174
[OLGB] human gut metagenome; faeces
2689
2776
+
Ser
TGA
[ENA]
¢þ
>WENV183040912
OLGD01000221
[OLGD] human gut metagenome; faeces
57283
57370
+
Ser
TGA
[ENA]
¢þ
Identical group No.94316 (3 seq.)
>A171006511
CP014214
Unclassified
methanogenic archaeon ISO4-H5 [CP014214]
868405
868492
+
Ser
TGA
-
¡û
>WENV180668173
OCVV011254115
[OCVV] gut metagenome; gut
117
30
-
Ser
TGA
[ENA]
¢þ
>WENV180668174
OCVV011254115
[OCVV] gut metagenome; gut
117
30
-
Ser
TGA
[ENA]
¢þ
Identical group No.111567 (1 seq.)
>A171005720
CP010070
Unclassified
Candidatus Methanoplasma termitum MpT1 [CP010070]
489425
489512
+
Ser
TGA
-
¡û
Identical group No.151263 (1 seq.)
>CL170500016
CP010424
Unclassified
archaeon GW2011_AR10 [CP010424]
191592
191391
-
Ser
TGA
-
¡û
Identical group No.152637 (1 seq.)
>CL170500017
CP010426
Unclassified
archaeon GW2011_AR20 [CP010426]
382344
382440
+
Ser
TGA
-
¡û
Identical group No.154095 (8 seq.)
>A171003539
CP004049
Unclassified
Candidatus Methanomethylophilus alvi Mx1201 [CP004049]
831347
831262
-
Ser
TGA
-
¡û
>WENV181606855
OGLM01001436
[OGLM] metagenome; Human gut stool
17871
17786
-
Ser
TGA
[ENA]
¢þ
>WENV181655685
OGOB01000474
[OGOB] metagenome; Human gut stool
15749
15834
+
Ser
TGA
[ENA]
¢þ
>WENV181772914
OGRD01034451
[OGRD] human gut metagenome; faeces
7
92
+
Ser
TGA
[ENA]
¢þ
>WENV182524885
OIWT01000784
[OIWT] human gut metagenome; faeces
26785
26700
-
Ser
TGA
[ENA]
¢þ
>WENV183045438
OLGE01011170
[OLGE] human gut metagenome; faeces
467
382
-
Ser
TGA
[ENA]
¢þ
>WENV183517765
OMNP01012799
[OMNP] human gut metagenome; feces
686
601
-
Ser
TGA
[ENA]
¢þ
>W1610011041
AMSE01000002
Unclassified
Methanomethylophilus alvi alvus Mx1201 [AMSE]
37158
37243
+
Ser
TGA
[ENA]
¡û
Identical group No.167863 (1 seq.)
>A171002529
CP002916
Unclassified
Thermoplasmatales archaeon BRNA1 [CP002916]
721670
721755
+
Ser
TGA
-
¡û
Identical group No.186809 (5 seq.)
>A171007759
LT671858
Unclassified
Cuniculiplasma divulgatum S5(T) [LT671858]
438577
438494
-
Ser
TGA
-
¡û
>A171007796
LT719092
Unclassified
Cuniculiplasma divulgatum PM4 [LT719092]
421281
421198
-
Ser
TGA
-
¡û
>W141000125
AADL01001764
Unclassified
mine drainage metagenome Group III [AADL]
456
373
-
Ser
TGA
[ENA]
¡û
>ENV09002220
ACXJ01011284
Mine drainage metagenome Contig1
12127
12210
+
Ser
TGA
[ENA]
¡û
>WENV077133
AADL01001764
Acid Mine Drainage microbial communities from Richmond mine
456
370
-
Ser
TGA
[ENA]
Identical group No.201406 (2 seq.)
>At1743
AE017261
Unclassified
Picrophilus oshimae DSM 9789 DSM 9790 [AE017261]
891135
891216
+
Ser
TGA
[Ensembl]
¡û
>W1910469092
FWYE01000001
Unclassified
Picrophilus oshimae DSM 9789 [FWYE]
86114
86031
-
Ser
TGA
[ENA]
¡û
Identical group No.219820 (7 seq.)
>A171003627
CP004145
Unclassified
Ferroplasma acidarmanus Fer1 [CP004145]
1460010
1460090
+
Ser
TGA
-
¡û
>A171006615
CP015363
Unclassified
Ferroplasma acidiphilum Y [CP015363]
433946
434026
+
Ser
TGA
-
¡û
>W141000043
AADL01001071
Unclassified
mine drainage metagenome Group III [AADL]
3653
3733
+
Ser
TGA
[ENA]
¡û
>W141000068
AADL01001481
Unclassified
mine drainage metagenome Group III [AADL]
24038
24120
+
Ser
TGA
[ENA]
¡û
>W1610000075
AABC05000014
Unclassified
Ferroplasma acidarmanus fer1 [AABC]
115892
115972
+
Ser
TGA
[ENA]
¡û
>WENV077051
AADL01001071
Acid Mine Drainage microbial communities from Richmond mine
3653
3736
+
Ser
TGA
[ENA]
>WENV077076
AADL01001481
Acid Mine Drainage microbial communities from Richmond mine
24038
24123
+
Ser
TGA
[ENA]
Identical group No.222465 (1 seq.)
>At2015
BA000011
Unclassified
Thermoplasma volcanium GSS1 [BA000011]
525553
525633
+
Ser
TGA
[Ensembl]
¡û
Identical group No.224709 (2 seq.)
>At1980
AL139299
Unclassified
Thermoplasma acidophilum [AL139299]
1340143
1340223
+
Ser
TGA
[Ensembl]
¡û
>W1911681181
QJSM01000036
Unclassified
Thermoplasma sp. Kam2015 [QJSM]
61032
60951
-
Ser
TGA
[ENA]
¡û
Identical group No.361483 (1 seq.)
>A17A000792
CP003168
Unclassified
Aciduliprofundum sp. MAR08-339 [CP003168]
765057
764929
-
Ser
TGA
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK