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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Anticodon = CGA
HIT:
27 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.2332 (1 seq.)
>CHL090100116
AB086179
Viridiplantae
Anthoceros formosae
23269
23176
-
Ser
CGA
[ENA]
¡û
Identical group No.4081 (1 seq.)
>CHL1810000674
AP014702
Viridiplantae
Takakia lepidozioides (AP014702)
26238
26146
-
Ser
CGA
[ENA]
¡û
Identical group No.5186 (1 seq.)
>CHL1810006620
JX827163
Viridiplantae
Apopellia endiviifolia (JX827163)
24097
24005
-
Ser
CGA
[ENA]
¡û
Identical group No.15532 (1 seq.)
>CHL090102239
DQ422812
Viridiplantae
Chlorokybus atmophyticus
57286
57375
+
Ser
CGA
[ENA]
¡û
Identical group No.27246 (1 seq.)
>CHL090103147
U30821
Glaucocystophyceae
Cyanophora paradoxa
86083
85995
-
Ser
CGA
[ENA]
¡û
Identical group No.41530 (1 seq.)
>CHL090100363
AF166114
Viridiplantae
Mesostigma viride
43904
43815
-
Ser
CGA
[ENA]
¡û
Identical group No.81277 (1 seq.)
>CHL090101737
AY958086
Viridiplantae
Zygnema circumcarinatum
29161
29247
+
Ser
CGA
[ENA]
¡û
Identical group No.85811 (1 seq.)
>CHL1810046775
LC008447
Alveolata
Lepidodinium chlorophorum (LC008447)
36053
36138
+
Ser
CGA
[ENA]
¡û
Identical group No.90113 (1 seq.)
>CHL1810027062
KU646494
Viridiplantae
Closterium baillyanum (KU646494)
23382
23298
-
Ser
CGA
[ENA]
¡û
Identical group No.93039 (1 seq.)
>CHL1810006677
KC117177
Viridiplantae
Equisetum hyemale (KC117177)
18803
18887
+
Ser
CGA
[ENA]
¡û
Identical group No.93779 (1 seq.)
>CHL090103178
U38804
Rhodophyta
Porphyra purpurea
114147
114063
-
Ser
CGA
[ENA]
¡û
Identical group No.97031 (1 seq.)
>CHL1810011725
KJ461682
Viridiplantae
Mesotaenium endlicherianum (KJ461682)
44854
44768
-
Ser
CGA
[ENA]
¡û
Identical group No.98684 (1 seq.)
>CHL1810004157
JF343520
Viridiplantae
Mankyua chejuensis (JF343520)
25694
25778
+
Ser
CGA
[ENA]
¡û
Identical group No.99275 (1 seq.)
>CHL090102350
DQ821119
Viridiplantae
Angiopteris evecta
16262
16346
+
Ser
CGA
[ENA]
¡û
Identical group No.100346 (2 seq.)
>CHL1810011676
KJ461681
Viridiplantae
Roya anglica (KJ461681)
76460
76544
+
Ser
CGA
[ENA]
¡û
>CHL1810027101
KU646496
Viridiplantae
Roya obtusa (KU646496)
76460
76544
+
Ser
CGA
[ENA]
¡û
Identical group No.102976 (1 seq.)
>CHL1810002479
GU191334
Viridiplantae
Equisetum arvense (GU191334)
74152
74068
-
Ser
CGA
[ENA]
¡û
Identical group No.103674 (1 seq.)
>CHL090100886
AP006715
Rhodophyta
Porphyra yezoensis
114893
114807
-
Ser
CGA
[ENA]
¡û
Identical group No.104324 (1 seq.)
>CHL1810012838
KJ746600
Viridiplantae
Nephroselmis astigmatica (KJ746600)
8534
8450
-
Ser
CGA
[ENA]
¡û
Identical group No.106833 (1 seq.)
>CHL1810008228
KC464603
Rhodophyta
Pyropia haitanensis (KC464603)
115909
115823
-
Ser
CGA
[ENA]
¡û
Identical group No.108195 (1 seq.)
>CHL090100777
AP004638
Viridiplantae
Psilotum nudum
13138
13224
+
Ser
CGA
[ENA]
¡û
Identical group No.109176 (1 seq.)
>CHL090100305
AF137379
Viridiplantae
Nephroselmis olivacea
55497
55581
+
Ser
CGA
[ENA]
¡û
Identical group No.110405 (1 seq.)
>CHL1810026988
KU646492
Viridiplantae
Cosmarium botrytis (KU646492)
128285
128369
+
Ser
CGA
[ENA]
¡û
Identical group No.110407 (1 seq.)
>CHL1830000508
KF225592
Viridiplantae
Osmundastrum cinnamomeum (KF225592)
23367
23453
+
Ser
CGA
[ENA]
¡û
Identical group No.112137 (1 seq.)
>CHL1810001722
FJ493498
Viridiplantae
Pycnococcus provasolii CCMP 1203 (FJ493498)
70361
70447
+
Ser
CGA
[ENA]
¡û
Identical group No.134548 (1 seq.)
>CHL1810026954
KU646491
Viridiplantae
Netrium digitus (KU646491)
37141
37224
+
Ser
CGA
[ENA]
¡û
Identical group No.134552 (1 seq.)
>CHL1830000356
KC117178
Viridiplantae
Ophioglossum californicum (KC117178)
22381
22464
+
Ser
CGA
[ENA]
¡û
Identical group No.152227 (1 seq.)
>CHL1810011667
KJ461680
Viridiplantae
Klebsormidium flaccidum (KJ461680)
27073
26990
-
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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