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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Anticodon = AAC
HIT:
14 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.245472 (1 seq.)
>FG090100016
AE016815
Ascomycota
Ashbya gossypii ATCC 10895
426677
426602
-
Val
AAC
[ENA]
¡û
Identical group No.280942 (53 seq.)
>WENV180024536
FTIH01090348
[FTIH] metagenome; soil
74
1
-
Val
AAC
[ENA]
¢þ
>WENV180623479
OCQE01060940
[OCQE] human gut metagenome; human gut
117
192
+
Val
AAC
[ENA]
¢þ
>WENV182597855
OJJC01002633
[OJJC] metagenome; faeces
373
448
+
Val
AAC
[ENA]
¢þ
>WENV183751536
PPYE01018137
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
1237
1162
-
Val
AAC
[ENA]
¢þ
>WENV170659136
JXWR01000444
[JXWR] soil metagenome; rice field; ambient CO2
4331
4256
-
Val
AAC
[ENA]
¢þ
>WENV170659223
JXWR01001715
[JXWR] soil metagenome; rice field; ambient CO2
3612
3537
-
Val
AAC
[ENA]
¢þ
>WENV170659446
JXWR01005716
[JXWR] soil metagenome; rice field; ambient CO2
5308
5235
-
Val
AAC
[ENA]
¢þ
>WENV170659447
JXWR01005717
[JXWR] soil metagenome; rice field; ambient CO2
2007
1934
-
Val
AAC
[ENA]
¢þ
>WENV170659448
JXWR01005718
[JXWR] soil metagenome; rice field; ambient CO2
258
183
-
Val
AAC
[ENA]
¢þ
>WENV170659453
JXWR01005815
[JXWR] soil metagenome; rice field; ambient CO2
10959
11032
+
Val
AAC
[ENA]
¢þ
>WENV170659545
JXWR01009315
[JXWR] soil metagenome; rice field; ambient CO2
3213
3288
+
Val
AAC
[ENA]
¢þ
>WENV170659595
JXWR01012045
[JXWR] soil metagenome; rice field; ambient CO2
259
184
-
Val
AAC
[ENA]
¢þ
>WENV170659636
JXWR01018249
[JXWR] soil metagenome; rice field; ambient CO2
2012
2087
+
Val
AAC
[ENA]
¢þ
>W1810698974
QMBO01002335
Gammaproteobacteria
Klebsiella oxytoca JK01 [QMBO]
149
224
+
Val
AAC
[ENA]
¡û
>FG090100033
AE016817
Ascomycota
Ashbya gossypii ATCC 10895
15043
14968
-
Val
AAC
[ENA]
¡û
>FG090100034
AE016818
Ascomycota
Ashbya gossypii ATCC 10895
49708
49783
+
Val
AAC
[ENA]
¡û
>FG090100050
AE016818
Ascomycota
Ashbya gossypii ATCC 10895
1515605
1515680
+
Val
AAC
[ENA]
¡û
>FG090100087
CR380949
Ascomycota
Candida glabrata CBS 138 CBS138
310054
309979
-
Val
AAC
[ENA]
¡û
>FG090100099
CR380950
Ascomycota
Candida glabrata CBS 138 CBS138
590297
590372
+
Val
AAC
[ENA]
¡û
>FG090100103
CR380950
Ascomycota
Candida glabrata CBS 138 CBS138
416642
416567
-
Val
AAC
[ENA]
¡û
>FG090100128
CR380953
Ascomycota
Candida glabrata CBS 138 CBS138
486478
486403
-
Val
AAC
[ENA]
¡û
>FG090100136
CR380954
Ascomycota
Candida glabrata CBS 138 CBS138
418418
418493
+
Val
AAC
[ENA]
¡û
>FG090100147
CR380955
Ascomycota
Candida glabrata CBS 138 CBS138
667630
667705
+
Val
AAC
[ENA]
¡û
>FG090100160
CR380955
Ascomycota
Candida glabrata CBS 138 CBS138
641922
641847
-
Val
AAC
[ENA]
¡û
>FG090100174
CR380956
Ascomycota
Candida glabrata CBS 138 CBS138
146478
146403
-
Val
AAC
[ENA]
¡û
>FG090100179
CR380957
Ascomycota
Candida glabrata CBS 138 CBS138
109313
109388
+
Val
AAC
[ENA]
¡û
>FG090100191
CR380957
Ascomycota
Candida glabrata CBS 138 CBS138
235749
235674
-
Val
AAC
[ENA]
¡û
>FG090100423
CR382122
Ascomycota
Kluyveromyces lactis NRRL Y-1140
1201072
1200997
-
Val
AAC
[ENA]
¡û
>FG090100483
CR382126
Ascomycota
Kluyveromyces lactis NRRL Y-1140
1176162
1176237
+
Val
AAC
[ENA]
¡û
>FG090100487
CR382126
Ascomycota
Kluyveromyces lactis NRRL Y-1140
1873729
1873804
+
Val
AAC
[ENA]
¡û
>FG090100492
CR382126
Ascomycota
Kluyveromyces lactis NRRL Y-1140
2460900
2460825
-
Val
AAC
[ENA]
¡û
>FG090100497
CR382126
Ascomycota
Kluyveromyces lactis NRRL Y-1140
2118129
2118056
-
Val
AAC
[ENA]
¡û
>SC0100052
NC_001137
Ascomycota
Saccharomyces cerevisiae S288c
438696
438769
+
Val
AAC
[ENA]
¡û
>SC0100053
NC_001137
Ascomycota
Saccharomyces cerevisiae S288c
469451
469526
+
Val
AAC
[ENA]
¡û
>SC0100082
NC_001139
Ascomycota
Saccharomyces cerevisiae S288c
823486
823561
+
Val
AAC
[ENA]
¡û
>SC0100091
NC_001139
Ascomycota
Saccharomyces cerevisiae S288c
412371
412296
-
Val
AAC
[ENA]
¡û
>SC0100095
NC_001139
Ascomycota
Saccharomyces cerevisiae S288c
73902
73827
-
Val
AAC
[ENA]
¡û
>SC0100103
NC_001140
Ascomycota
Saccharomyces cerevisiae S288c
85368
85293
-
Val
AAC
[ENA]
¡û
>SC0100117
NC_001142
Ascomycota
Saccharomyces cerevisiae S288c
378355
378428
+
Val
AAC
[ENA]
¡û
>SC0100137
NC_001143
Ascomycota
Saccharomyces cerevisiae S288c
379323
379396
+
Val
AAC
[ENA]
¡û
>SC0100142
NC_001143
Ascomycota
Saccharomyces cerevisiae S288c
307862
307787
-
Val
AAC
[ENA]
¡û
>SC0100155
NC_001144
Ascomycota
Saccharomyces cerevisiae S288c
687934
687861
-
Val
AAC
[ENA]
¡û
>SC0100166
NC_001145
Ascomycota
Saccharomyces cerevisiae S288c
586709
586634
-
Val
AAC
[ENA]
¡û
>SC0100169
NC_001145
Ascomycota
Saccharomyces cerevisiae S288c
420660
420587
-
Val
AAC
[ENA]
¡û
>SC0100170
NC_001145
Ascomycota
Saccharomyces cerevisiae S288c
372518
372443
-
Val
AAC
[ENA]
¡û
>FG091100003
AE016814
Ascomycota
Ashbya gossypii ATCC 10895
564352
564427
+
Val
AAC
[ENA]
¡û
>FG091100058
AE016819
Ascomycota
Ashbya gossypii ATCC 10895
644904
644829
-
Val
AAC
[ENA]
¡û
>FG091100109
CR382123
Ascomycota
Kluyveromyces lactis NRRL Y-1140
1355908
1355983
+
Val
AAC
[ENA]
¡û
>FG091100111
CR382123
Ascomycota
Kluyveromyces lactis NRRL Y-1140
1592690
1592615
-
Val
AAC
[ENA]
¡û
>W1610134950
FABT01000757
Bacillota
Clostridioides difficile [FABT]
182
107
-
Val
AAC
[ENA]
¡û
>W1610142286
FAFB01001405
Bacillota
Clostridioides difficile [FAFB]
96
171
+
Val
AAC
[ENA]
¡û
>W1710136617
FABT01000757
Bacillota
Clostridioides difficile [FABT]
182
107
-
Val
AAC
[ENA]
¡û
>W1710143953
FAFB01001405
Bacillota
Clostridioides difficile [FAFB]
96
171
+
Val
AAC
[ENA]
¡û
Identical group No.281004 (7 seq.)
>FG090800053
AE017352
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
497760
497849
+
Val
AAC
[ENA]
¡û
>FG090800054
AE017352
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
511669
511757
+
Val
AAC
[ENA]
¡û
>FG090800055
AE017352
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
529453
529543
+
Val
AAC
[ENA]
¡û
>FG090800056
AE017352
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
580145
580234
+
Val
AAC
[ENA]
¡û
>FG090800058
AE017352
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
512524
512436
-
Val
AAC
[ENA]
¡û
>FG091800009
AE017341
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
1955473
1955382
-
Val
AAC
[ENA]
¡û
>FG091800026
AE017348
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
995348
995439
+
Val
AAC
[ENA]
¡û
Identical group No.293074 (21 seq.)
>WENV183511955
OMJG01022732
[OMJG] food metagenome; Cotija cheese
554
479
-
Val
AAC
[ENA]
¢þ
>WENV170659141
JXWR01000480
[JXWR] soil metagenome; rice field; ambient CO2
334
409
+
Val
AAC
[ENA]
¢þ
>WENV170659164
JXWR01001001
[JXWR] soil metagenome; rice field; ambient CO2
3617
3542
-
Val
AAC
[ENA]
¢þ
>WENV170659221
JXWR01001686
[JXWR] soil metagenome; rice field; ambient CO2
4966
5041
+
Val
AAC
[ENA]
¢þ
>WENV170659227
JXWR01001794
[JXWR] soil metagenome; rice field; ambient CO2
546
621
+
Val
AAC
[ENA]
¢þ
>WENV170659232
JXWR01001983
[JXWR] soil metagenome; rice field; ambient CO2
1171
1246
+
Val
AAC
[ENA]
¢þ
>WENV170659235
JXWR01002028
[JXWR] soil metagenome; rice field; ambient CO2
440
513
+
Val
AAC
[ENA]
¢þ
>WENV170659335
JXWR01003549
[JXWR] soil metagenome; rice field; ambient CO2
36
111
+
Val
AAC
[ENA]
¢þ
>WENV170659439
JXWR01005502
[JXWR] soil metagenome; rice field; ambient CO2
2486
2411
-
Val
AAC
[ENA]
¢þ
>WENV170659449
JXWR01005719
[JXWR] soil metagenome; rice field; ambient CO2
9286
9211
-
Val
AAC
[ENA]
¢þ
>WENV170659477
JXWR01006667
[JXWR] soil metagenome; rice field; ambient CO2
2593
2668
+
Val
AAC
[ENA]
¢þ
>WENV170659492
JXWR01006961
[JXWR] soil metagenome; rice field; ambient CO2
3593
3668
+
Val
AAC
[ENA]
¢þ
>FG090100252
CR382134
Ascomycota
Debaryomyces hansenii CBS767
873997
874072
+
Val
AAC
[ENA]
¡û
>FG090100281
CR382137
Ascomycota
Debaryomyces hansenii CBS767
950092
950167
+
Val
AAC
[ENA]
¡û
>FG090100286
CR382137
Ascomycota
Debaryomyces hansenii CBS767
1546052
1546127
+
Val
AAC
[ENA]
¡û
>FG090100290
CR382137
Ascomycota
Debaryomyces hansenii CBS767
1885020
1885095
+
Val
AAC
[ENA]
¡û
>FG090100295
CR382137
Ascomycota
Debaryomyces hansenii CBS767
1679562
1679487
-
Val
AAC
[ENA]
¡û
>FG090100325
CR382138
Ascomycota
Debaryomyces hansenii CBS767
1517012
1516937
-
Val
AAC
[ENA]
¡û
>FG090100335
CR382139
Ascomycota
Debaryomyces hansenii CBS767
984375
984450
+
Val
AAC
[ENA]
¡û
>FG091100182
CR382135
Ascomycota
Debaryomyces hansenii CBS767
950137
950062
-
Val
AAC
[ENA]
¡û
>FG091100196
CR382136
Ascomycota
Debaryomyces hansenii CBS767
1417393
1417320
-
Val
AAC
[ENA]
¡û
Identical group No.306493 (3 seq.)
>FG090100525
CM000437
Ascomycota
Pichia stipitis CBS 6054
2417714
2417639
-
Val
AAC
[ENA]
¡û
>FG090100602
CP000502
Ascomycota
Pichia stipitis CBS 6054
253311
253236
-
Val
AAC
[ENA]
¡û
>FG091100083
CP000496
Ascomycota
Pichia stipitis CBS 6054
907296
907221
-
Val
AAC
[ENA]
¡û
Identical group No.306519 (2 seq.)
>FG091100012
AE016815
Ascomycota
Ashbya gossypii ATCC 10895
570325
570400
+
Val
AAC
[ENA]
¡û
>FG091100064
AE016820
Ascomycota
Ashbya gossypii ATCC 10895
1252653
1252578
-
Val
AAC
[ENA]
¡û
Identical group No.323950 (5 seq.)
>WENV170659130
JXWR01000377
[JXWR] soil metagenome; rice field; ambient CO2
391
466
+
Val
AAC
[ENA]
¢þ
>WENV170659533
JXWR01008698
[JXWR] soil metagenome; rice field; ambient CO2
375
450
+
Val
AAC
[ENA]
¢þ
>FG090100545
CP000497
Ascomycota
Pichia stipitis CBS 6054
284347
284422
+
Val
AAC
[ENA]
¡û
>FG090100553
CP000498
Ascomycota
Pichia stipitis CBS 6054
1302407
1302332
-
Val
AAC
[ENA]
¡û
>FG090100584
CP000500
Ascomycota
Pichia stipitis CBS 6054
1210590
1210665
+
Val
AAC
[ENA]
¡û
Identical group No.323953 (22 seq.)
>FG090100689
CR382128
Ascomycota
Yarrowia lipolytica CLIB122
665559
665633
+
Val
AAC
[ENA]
¡û
>FG090100690
CR382128
Ascomycota
Yarrowia lipolytica CLIB122
685616
685690
+
Val
AAC
[ENA]
¡û
>FG090100693
CR382128
Ascomycota
Yarrowia lipolytica CLIB122
1479582
1479656
+
Val
AAC
[ENA]
¡û
>FG090100695
CR382128
Ascomycota
Yarrowia lipolytica CLIB122
2112388
2112462
+
Val
AAC
[ENA]
¡û
>FG090100696
CR382128
Ascomycota
Yarrowia lipolytica CLIB122
2862549
2862623
+
Val
AAC
[ENA]
¡û
>FG090100721
CR382129
Ascomycota
Yarrowia lipolytica CLIB122
1972146
1972220
+
Val
AAC
[ENA]
¡û
>FG090100729
CR382129
Ascomycota
Yarrowia lipolytica CLIB122
3089420
3089346
-
Val
AAC
[ENA]
¡û
>FG090100734
CR382129
Ascomycota
Yarrowia lipolytica CLIB122
1873308
1873235
-
Val
AAC
[ENA]
¡û
>FG090100735
CR382129
Ascomycota
Yarrowia lipolytica CLIB122
1651851
1651778
-
Val
AAC
[ENA]
¡û
>FG090100741
CR382130
Ascomycota
Yarrowia lipolytica CLIB122
569754
569827
+
Val
AAC
[ENA]
¡û
>FG090100745
CR382130
Ascomycota
Yarrowia lipolytica CLIB122
1328162
1328236
+
Val
AAC
[ENA]
¡û
>FG090100752
CR382130
Ascomycota
Yarrowia lipolytica CLIB122
2633141
2633215
+
Val
AAC
[ENA]
¡û
>FG090100755
CR382130
Ascomycota
Yarrowia lipolytica CLIB122
2846888
2846814
-
Val
AAC
[ENA]
¡û
>FG090100758
CR382130
Ascomycota
Yarrowia lipolytica CLIB122
2044290
2044216
-
Val
AAC
[ENA]
¡û
>FG091100125
CR382127
Ascomycota
Yarrowia lipolytica CLIB122
1424784
1424858
+
Val
AAC
[ENA]
¡û
>FG091100129
CR382127
Ascomycota
Yarrowia lipolytica CLIB122
1633502
1633576
+
Val
AAC
[ENA]
¡û
>FG091100130
CR382127
Ascomycota
Yarrowia lipolytica CLIB122
1749922
1749996
+
Val
AAC
[ENA]
¡û
>FG091100137
CR382127
Ascomycota
Yarrowia lipolytica CLIB122
1494551
1494477
-
Val
AAC
[ENA]
¡û
>FG091100145
CR382127
Ascomycota
Yarrowia lipolytica CLIB122
585401
585327
-
Val
AAC
[ENA]
¡û
>FG091100154
CR382132
Ascomycota
Yarrowia lipolytica CLIB122
3672769
3672842
+
Val
AAC
[ENA]
¡û
>FG091100163
CR382132
Ascomycota
Yarrowia lipolytica CLIB122
1515690
1515616
-
Val
AAC
[ENA]
¡û
>FG091100164
CR382132
Ascomycota
Yarrowia lipolytica CLIB122
1023634
1023560
-
Val
AAC
[ENA]
¡û
Identical group No.340228 (9 seq.)
>FG090800090
CU329671
Ascomycota
Schizosaccharomyces_pombe_972h-
1629159
1629241
+
Val
AAC
[ENA]
¡û
>FG090800094
CU329671
Ascomycota
Schizosaccharomyces_pombe_972h-
1646387
1646305
-
Val
AAC
[ENA]
¡û
>FG090800095
CU329671
Ascomycota
Schizosaccharomyces_pombe_972h-
1619256
1619174
-
Val
AAC
[ENA]
¡û
>FG090800096
CU329671
Ascomycota
Schizosaccharomyces_pombe_972h-
1601049
1600967
-
Val
AAC
[ENA]
¡û
>FG090800097
CU329672
Ascomycota
Schizosaccharomyces_pombe_972h-
1092934
1093016
+
Val
AAC
[ENA]
¡û
>FG090800101
CU329672
Ascomycota
Schizosaccharomyces_pombe_972h-
1106060
1105978
-
Val
AAC
[ENA]
¡û
>FG090800102
CU329672
Ascomycota
Schizosaccharomyces_pombe_972h-
1065860
1065778
-
Val
AAC
[ENA]
¡û
>FG092810003
CU329670
Ascomycota
Schizosaccharomyces_pombe_972h-
3710822
3710738
-
Val
AAC
[ENA]
¡û
>FG092910009
CU329670
Ascomycota
Schizosaccharomyces_pombe_972h-
2214814
2214733
-
Val
AAC
[ENA]
¡û
Identical group No.382654 (1 seq.)
>FG090100754
CR382130
Ascomycota
Yarrowia lipolytica CLIB122
3375865
3375939
+
Val
AAC
[ENA]
¡û
Identical group No.393133 (2 seq.)
>FG090100351
CR382139
Ascomycota
Debaryomyces hansenii CBS767
1422314
1422241
-
Val
AAC
[ENA]
¡û
>FG090100596
CP000501
Ascomycota
Pichia stipitis CBS 6054
788314
788387
+
Val
AAC
[ENA]
¡û
Identical group No.393135 (1 seq.)
>SC0100192
NC_001147
Ascomycota
Saccharomyces cerevisiae S288c
663887
663812
-
Val
AAC
[ENA]
¡û
Identical group No.417072 (1 seq.)
>FG090100686
CR382127
Ascomycota
Yarrowia lipolytica CLIB122
227164
227089
-
Val
AAC
[ENA]
¡û
Identical group No.586969 (1 seq.)
>FG090100380
AL590448
Microsporidia
Encephalitozoon_cuniculi_GB-M1
107288
107360
+
Val
AAC
[ENA]
¡û
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Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
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Direction
AA
Anticodon
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Decision
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