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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Anticodon = AAG
HIT:
10 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.160822 (4 seq.)
>FG090100520
CM000437
Ascomycota
Pichia stipitis CBS 6054
3179586
3179504
-
Leu
AAG
[ENA]
¡û
>FG090100546
CP000497
Ascomycota
Pichia stipitis CBS 6054
303827
303909
+
Leu
AAG
[ENA]
¡û
>FG090100588
CP000500
Ascomycota
Pichia stipitis CBS 6054
1338652
1338570
-
Leu
AAG
[ENA]
¡û
>FG091100179
CR382135
Ascomycota
Debaryomyces hansenii CBS767
1452409
1452491
+
Leu
AAG
[ENA]
¡û
Identical group No.164833 (1 seq.)
>FG090100257
CR382135
Ascomycota
Debaryomyces hansenii CBS767
305467
305552
+
Leu
AAG
[ENA]
¡û
Identical group No.190888 (1 seq.)
>FG090800127
CR382129
Ascomycota
Yarrowia lipolytica CLIB122
976064
976163
+
Leu
AAG
[ENA]
¡û
Identical group No.190889 (9 seq.)
>FG090800108
CR382127
Ascomycota
Yarrowia lipolytica CLIB122
163182
163083
-
Leu
AAG
[ENA]
¡û
>FG090800111
CR382128
Ascomycota
Yarrowia lipolytica CLIB122
44278
44377
+
Leu
AAG
[ENA]
¡û
>FG090800132
CR382129
Ascomycota
Yarrowia lipolytica CLIB122
2484477
2484576
+
Leu
AAG
[ENA]
¡û
>FG090800144
CR382130
Ascomycota
Yarrowia lipolytica CLIB122
435291
435390
+
Leu
AAG
[ENA]
¡û
>FG090800149
CR382130
Ascomycota
Yarrowia lipolytica CLIB122
2492601
2492700
+
Leu
AAG
[ENA]
¡û
>FG090800165
CR382131
Ascomycota
Yarrowia lipolytica CLIB122
1916796
1916697
-
Leu
AAG
[ENA]
¡û
>FG091800027
CR382127
Ascomycota
Yarrowia lipolytica CLIB122
163183
163082
-
Leu
AAG
[ENA]
¡û
>FG091800045
CR382127
Ascomycota
Yarrowia lipolytica CLIB122
1594263
1594161
-
Leu
AAG
[ENA]
¡û
>FG091800054
CR382132
Ascomycota
Yarrowia lipolytica CLIB122
2179698
2179797
+
Leu
AAG
[ENA]
¡û
Identical group No.190890 (12 seq.)
>FU090900199
CR382127
Ascomycota
Yarrowia lipolytica CLIB122
166763
166861
+
Leu
AAG
[ENA]
¡û
>FU090900201
CR382127
Ascomycota
Yarrowia lipolytica CLIB122
377817
377916
+
Leu
AAG
[ENA]
¡û
>FU090900228
CR382129
Ascomycota
Yarrowia lipolytica CLIB122
436858
436957
+
Leu
AAG
[ENA]
¡û
>FU090900255
CR382129
Ascomycota
Yarrowia lipolytica CLIB122
524803
524704
-
Leu
AAG
[ENA]
¡û
>FU090900284
CR382131
Ascomycota
Yarrowia lipolytica CLIB122
916365
916464
+
Leu
AAG
[ENA]
¡û
>FG091900234
CR382127
Ascomycota
Yarrowia lipolytica CLIB122
701288
701387
+
Leu
AAG
[ENA]
¡û
>FG091900259
CR382127
Ascomycota
Yarrowia lipolytica CLIB122
1750234
1750135
-
Leu
AAG
[ENA]
¡û
>FG091900273
CR382127
Ascomycota
Yarrowia lipolytica CLIB122
847879
847779
-
Leu
AAG
[ENA]
¡û
>FG091900281
CR382132
Ascomycota
Yarrowia lipolytica CLIB122
1075595
1075694
+
Leu
AAG
[ENA]
¡û
>FG091900290
CR382132
Ascomycota
Yarrowia lipolytica CLIB122
3657968
3658067
+
Leu
AAG
[ENA]
¡û
>FG091900295
CR382132
Ascomycota
Yarrowia lipolytica CLIB122
3938324
3938423
+
Leu
AAG
[ENA]
¡û
>FG091900308
CR382132
Ascomycota
Yarrowia lipolytica CLIB122
3217867
3217768
-
Leu
AAG
[ENA]
¡û
Identical group No.205475 (1 seq.)
>FG090100357
AL590442
Microsporidia
Encephalitozoon_cuniculi_GB-M1
179296
179377
+
Leu
AAG
[ENA]
¡û
Identical group No.228704 (5 seq.)
>FG090800034
AE017349
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
964404
964302
-
Leu
AAG
[ENA]
¡û
>FU090900065
AE017346
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
232120
232020
-
Leu
AAG
[ENA]
¡û
>FG091900192
AE017341
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
1208523
1208623
+
Leu
AAG
[ENA]
¡û
>FG091900194
AE017341
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
1199520
1199420
-
Leu
AAG
[ENA]
¡û
>FG091900195
AE017341
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
1197701
1197601
-
Leu
AAG
[ENA]
¡û
Identical group No.232371 (1 seq.)
>FG090800049
AE017351
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
573294
573396
+
Leu
AAG
[ENA]
¡û
Identical group No.232836 (3 seq.)
>FG090100623
CU329671
Ascomycota
Schizosaccharomyces_pombe_972h-
3914042
3914122
+
Leu
AAG
[ENA]
¡û
>FG090100631
CU329671
Ascomycota
Schizosaccharomyces_pombe_972h-
2768335
2768257
-
Leu
AAG
[ENA]
¡û
>FG090100659
CU329672
Ascomycota
Schizosaccharomyces_pombe_972h-
1069166
1069244
+
Leu
AAG
[ENA]
¡û
Identical group No.232837 (2 seq.)
>FG090100629
CU329671
Ascomycota
Schizosaccharomyces_pombe_972h-
3209217
3209139
-
Leu
AAG
[ENA]
¡û
>FG092110023
CU329670
Ascomycota
Schizosaccharomyces_pombe_972h-
4059106
4059028
-
Leu
AAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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