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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Anticodon = AAT
HIT:
8 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.260112 (6 seq.)
>FG090800030
AE017349
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
119969
120057
+
Ile
AAT
[ENA]
¡û
>FG090800031
AE017349
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
139526
139615
+
Ile
AAT
[ENA]
¡û
>FG090800035
AE017349
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
183511
183423
-
Ile
AAT
[ENA]
¡û
>FG090800037
AE017349
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
127579
127491
-
Ile
AAT
[ENA]
¡û
>FG090800038
AE017349
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
108254
108166
-
Ile
AAT
[ENA]
¡û
>FG090800052
AE017352
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
464299
464389
+
Ile
AAT
[ENA]
¡û
Identical group No.280943 (36 seq.)
>WENV181967843
OGZV01031376
[OGZV] human gut metagenome; faeces
514
439
-
Ile
AAT
[ENA]
¢þ
>WENV182597854
OJJC01002490
[OJJC] metagenome; faeces
44
119
+
Ile
AAT
[ENA]
¢þ
>WENV183751602
PPYE01022404
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
1176
1251
+
Ile
AAT
[ENA]
¢þ
>WENV183751665
PPYE01027005
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
995
1070
+
Ile
AAT
[ENA]
¢þ
>WENV170659156
JXWR01000795
[JXWR] soil metagenome; rice field; ambient CO2
2564
2637
+
Ile
AAT
[ENA]
¢þ
>WENV170659237
JXWR01002166
[JXWR] soil metagenome; rice field; ambient CO2
754
679
-
Ile
AAT
[ENA]
¢þ
>WENV170659445
JXWR01005716
[JXWR] soil metagenome; rice field; ambient CO2
731
806
+
Ile
AAT
[ENA]
¢þ
>WENV170659594
JXWR01011853
[JXWR] soil metagenome; rice field; ambient CO2
3611
3686
+
Ile
AAT
[ENA]
¢þ
>WENV170659665
JXWR01022707
[JXWR] soil metagenome; rice field; ambient CO2
1100
1025
-
Ile
AAT
[ENA]
¢þ
>WENV170659678
JXWR01026052
[JXWR] soil metagenome; rice field; ambient CO2
150
77
-
Ile
AAT
[ENA]
¢þ
>WENV170659683
JXWR01027391
[JXWR] soil metagenome; rice field; ambient CO2
106
31
-
Ile
AAT
[ENA]
¢þ
>WENV170659693
JXWR01030049
[JXWR] soil metagenome; rice field; ambient CO2
21
96
+
Ile
AAT
[ENA]
¢þ
>FG090100130
CR380953
Ascomycota
Candida glabrata CBS 138 CBS138
152679
152606
-
Ile
AAT
[ENA]
¡û
>FG090100146
CR380955
Ascomycota
Candida glabrata CBS 138 CBS138
625425
625500
+
Ile
AAT
[ENA]
¡û
>FG090100153
CR380955
Ascomycota
Candida glabrata CBS 138 CBS138
1058503
1058428
-
Ile
AAT
[ENA]
¡û
>FG090100165
CR380956
Ascomycota
Candida glabrata CBS 138 CBS138
928133
928208
+
Ile
AAT
[ENA]
¡û
>FG090100169
CR380956
Ascomycota
Candida glabrata CBS 138 CBS138
329394
329319
-
Ile
AAT
[ENA]
¡û
>FG090100203
CR380958
Ascomycota
Candida glabrata CBS 138 CBS138
1343774
1343849
+
Ile
AAT
[ENA]
¡û
>FG090100211
CR380958
Ascomycota
Candida glabrata CBS 138 CBS138
936689
936614
-
Ile
AAT
[ENA]
¡û
>FG090100212
CR380958
Ascomycota
Candida glabrata CBS 138 CBS138
719667
719592
-
Ile
AAT
[ENA]
¡û
>FG090100225
CR380959
Ascomycota
Candida glabrata CBS 138 CBS138
689458
689383
-
Ile
AAT
[ENA]
¡û
>SC0100004
NC_001134
Ascomycota
Saccharomyces cerevisiae S288c
197497
197570
+
Ile
AAT
[ENA]
¡û
>SC0100040
NC_001136
Ascomycota
Saccharomyces cerevisiae S288c
668078
668003
-
Ile
AAT
[ENA]
¡û
>SC0100054
NC_001137
Ascomycota
Saccharomyces cerevisiae S288c
551353
551280
-
Ile
AAT
[ENA]
¡û
>SC0100057
NC_001137
Ascomycota
Saccharomyces cerevisiae S288c
443272
443197
-
Ile
AAT
[ENA]
¡û
>SC0100078
NC_001139
Ascomycota
Saccharomyces cerevisiae S288c
739127
739200
+
Ile
AAT
[ENA]
¡û
>SC0100106
NC_001141
Ascomycota
Saccharomyces cerevisiae S288c
210661
210736
+
Ile
AAT
[ENA]
¡û
>SC0100112
NC_001141
Ascomycota
Saccharomyces cerevisiae S288c
183510
183436
-
Ile
AAT
[ENA]
¡û
>SC0100148
NC_001144
Ascomycota
Saccharomyces cerevisiae S288c
734803
734878
+
Ile
AAT
[ENA]
¡û
>SC0100152
NC_001144
Ascomycota
Saccharomyces cerevisiae S288c
1052143
1052068
-
Ile
AAT
[ENA]
¡û
>SC0100177
NC_001146
Ascomycota
Saccharomyces cerevisiae S288c
602312
602387
+
Ile
AAT
[ENA]
¡û
>SC0100181
NC_001146
Ascomycota
Saccharomyces cerevisiae S288c
569942
569867
-
Ile
AAT
[ENA]
¡û
>SC0100203
NC_001148
Ascomycota
Saccharomyces cerevisiae S288c
819524
819599
+
Ile
AAT
[ENA]
¡û
>SC0100206
NC_001148
Ascomycota
Saccharomyces cerevisiae S288c
880366
880291
-
Ile
AAT
[ENA]
¡û
>W1610144571
FAGC01002463
Bacillota
Clostridioides difficile [FAGC]
170
96
-
Ile
AAT
[ENA]
¡û
>W1710146238
FAGC01002463
Bacillota
Clostridioides difficile [FAGC]
170
96
-
Ile
AAT
[ENA]
¡û
Identical group No.280944 (1 seq.)
>FG090100364
AL590444
Microsporidia
Encephalitozoon_cuniculi_GB-M1
25454
25528
+
Ile
AAT
[ENA]
¡û
Identical group No.306492 (16 seq.)
>FG090100007
AE016814
Ascomycota
Ashbya gossypii ATCC 10895
408821
408896
+
Ile
AAT
[ENA]
¡û
>FG090100023
AE016816
Ascomycota
Ashbya gossypii ATCC 10895
293218
293293
+
Ile
AAT
[ENA]
¡û
>FG090100030
AE016817
Ascomycota
Ashbya gossypii ATCC 10895
412797
412722
-
Ile
AAT
[ENA]
¡û
>FG090100031
AE016817
Ascomycota
Ashbya gossypii ATCC 10895
321052
320977
-
Ile
AAT
[ENA]
¡û
>FG090100039
AE016818
Ascomycota
Ashbya gossypii ATCC 10895
148431
148506
+
Ile
AAT
[ENA]
¡û
>FG090100068
AE016820
Ascomycota
Ashbya gossypii ATCC 10895
242563
242638
+
Ile
AAT
[ENA]
¡û
>FG090100396
CR382121
Ascomycota
Kluyveromyces lactis NRRL Y-1140
337926
338001
+
Ile
AAT
[ENA]
¡û
>FG090100418
CR382122
Ascomycota
Kluyveromyces lactis NRRL Y-1140
611055
611130
+
Ile
AAT
[ENA]
¡û
>FG090100425
CR382122
Ascomycota
Kluyveromyces lactis NRRL Y-1140
943596
943521
-
Ile
AAT
[ENA]
¡û
>FG090100462
CR382125
Ascomycota
Kluyveromyces lactis NRRL Y-1140
759479
759554
+
Ile
AAT
[ENA]
¡û
>FG090100480
CR382126
Ascomycota
Kluyveromyces lactis NRRL Y-1140
565689
565764
+
Ile
AAT
[ENA]
¡û
>FG090100482
CR382126
Ascomycota
Kluyveromyces lactis NRRL Y-1140
1092865
1092940
+
Ile
AAT
[ENA]
¡û
>FG091100033
AE016817
Ascomycota
Ashbya gossypii ATCC 10895
645083
645008
-
Ile
AAT
[ENA]
¡û
>FG091100043
AE016819
Ascomycota
Ashbya gossypii ATCC 10895
1226417
1226492
+
Ile
AAT
[ENA]
¡û
>FG091100060
AE016820
Ascomycota
Ashbya gossypii ATCC 10895
922774
922849
+
Ile
AAT
[ENA]
¡û
>FG091100113
CR382123
Ascomycota
Kluyveromyces lactis NRRL Y-1140
1481746
1481671
-
Ile
AAT
[ENA]
¡û
Identical group No.309039 (25 seq.)
>WENV180280433
OBHY01018375
[OBHY] human gut metagenome; Tissue from the tricuspid valve
13
88
+
Ile
AAT
[ENA]
¢þ
>WENV181813302
OGTC01000069
[OGTC] human gut metagenome; fecal sample 2 from infant 9
55805
55730
-
Ile
AAT
[ENA]
¢þ
>WENV181813303
OGTC01000071
[OGTC] human gut metagenome; fecal sample 2 from infant 9
72898
72971
+
Ile
AAT
[ENA]
¢þ
>WENV181813373
OGTC01000336
[OGTC] human gut metagenome; fecal sample 2 from infant 9
4760
4834
+
Ile
AAT
[ENA]
¢þ
>WENV181813376
OGTC01000388
[OGTC] human gut metagenome; fecal sample 2 from infant 9
7834
7909
+
Ile
AAT
[ENA]
¢þ
>WENV181815173
OGTJ01000064
[OGTJ] human gut metagenome; fecal sample 1 from infant 9
3297
3224
-
Ile
AAT
[ENA]
¢þ
>WENV181815185
OGTJ01000084
[OGTJ] human gut metagenome; fecal sample 1 from infant 9
60420
60346
-
Ile
AAT
[ENA]
¢þ
>WENV181815215
OGTJ01000184
[OGTJ] human gut metagenome; fecal sample 1 from infant 9
13942
13867
-
Ile
AAT
[ENA]
¢þ
>WENV181815223
OGTJ01000259
[OGTJ] human gut metagenome; fecal sample 1 from infant 9
7824
7899
+
Ile
AAT
[ENA]
¢þ
>FG090100244
CR382134
Ascomycota
Debaryomyces hansenii CBS767
73590
73663
+
Ile
AAT
[ENA]
¡û
>FG090100247
CR382134
Ascomycota
Debaryomyces hansenii CBS767
434913
434986
+
Ile
AAT
[ENA]
¡û
>FG090100262
CR382136
Ascomycota
Debaryomyces hansenii CBS767
409268
409341
+
Ile
AAT
[ENA]
¡û
>FG090100291
CR382137
Ascomycota
Debaryomyces hansenii CBS767
1893333
1893260
-
Ile
AAT
[ENA]
¡û
>FG090100310
CR382138
Ascomycota
Debaryomyces hansenii CBS767
196481
196554
+
Ile
AAT
[ENA]
¡û
>FG090100329
CR382139
Ascomycota
Debaryomyces hansenii CBS767
241224
241299
+
Ile
AAT
[ENA]
¡û
>FG090100353
CR382139
Ascomycota
Debaryomyces hansenii CBS767
1087606
1087531
-
Ile
AAT
[ENA]
¡û
>FG090100506
CM000437
Ascomycota
Pichia stipitis CBS 6054
193756
193830
+
Ile
AAT
[ENA]
¡û
>FG090100521
CM000437
Ascomycota
Pichia stipitis CBS 6054
2850258
2850185
-
Ile
AAT
[ENA]
¡û
>FG090100556
CP000498
Ascomycota
Pichia stipitis CBS 6054
1135236
1135163
-
Ile
AAT
[ENA]
¡û
>FG090100569
CP000499
Ascomycota
Pichia stipitis CBS 6054
1093988
1094061
+
Ile
AAT
[ENA]
¡û
>FG091100094
CP000497
Ascomycota
Pichia stipitis CBS 6054
1629461
1629388
-
Ile
AAT
[ENA]
¡û
>FG091100097
CP000497
Ascomycota
Pichia stipitis CBS 6054
1351967
1351894
-
Ile
AAT
[ENA]
¡û
>FG091100099
CP000497
Ascomycota
Pichia stipitis CBS 6054
1334202
1334129
-
Ile
AAT
[ENA]
¡û
>FG091100175
CR382135
Ascomycota
Debaryomyces hansenii CBS767
903328
903401
+
Ile
AAT
[ENA]
¡û
>FG091100177
CR382135
Ascomycota
Debaryomyces hansenii CBS767
1372333
1372406
+
Ile
AAT
[ENA]
¡û
Identical group No.323957 (30 seq.)
>FG090500017
CR382129
Ascomycota
Yarrowia lipolytica CLIB122
2469914
2470004
+
Ile
AAT
[ENA]
¡û
>FG090800106
CR382127
Ascomycota
Yarrowia lipolytica CLIB122
337180
337089
-
Ile
AAT
[ENA]
¡û
>FG090800117
CR382128
Ascomycota
Yarrowia lipolytica CLIB122
2623252
2623160
-
Ile
AAT
[ENA]
¡û
>FG090800118
CR382128
Ascomycota
Yarrowia lipolytica CLIB122
2569380
2569288
-
Ile
AAT
[ENA]
¡û
>FG090800121
CR382128
Ascomycota
Yarrowia lipolytica CLIB122
525160
525069
-
Ile
AAT
[ENA]
¡û
>FG090800133
CR382129
Ascomycota
Yarrowia lipolytica CLIB122
2654295
2654388
+
Ile
AAT
[ENA]
¡û
>FG090800134
CR382129
Ascomycota
Yarrowia lipolytica CLIB122
2767276
2767184
-
Ile
AAT
[ENA]
¡û
>FG090800138
CR382129
Ascomycota
Yarrowia lipolytica CLIB122
1803723
1803634
-
Ile
AAT
[ENA]
¡û
>FG090800139
CR382129
Ascomycota
Yarrowia lipolytica CLIB122
1620634
1620543
-
Ile
AAT
[ENA]
¡û
>FG090800140
CR382129
Ascomycota
Yarrowia lipolytica CLIB122
643111
643019
-
Ile
AAT
[ENA]
¡û
>FG090800157
CR382131
Ascomycota
Yarrowia lipolytica CLIB122
800521
800613
+
Ile
AAT
[ENA]
¡û
>FG090800161
CR382131
Ascomycota
Yarrowia lipolytica CLIB122
3029597
3029689
+
Ile
AAT
[ENA]
¡û
>FG090800163
CR382131
Ascomycota
Yarrowia lipolytica CLIB122
3318795
3318704
-
Ile
AAT
[ENA]
¡û
>FU090900240
CR382129
Ascomycota
Yarrowia lipolytica CLIB122
2469914
2470004
+
Ile
AAT
[ENA]
¡û
>FG091500008
CR382127
Ascomycota
Yarrowia lipolytica CLIB122
1379010
1379100
+
Ile
AAT
[ENA]
¡û
>FG091500012
CR382127
Ascomycota
Yarrowia lipolytica CLIB122
2177545
2177635
+
Ile
AAT
[ENA]
¡û
>FG091500019
CR382132
Ascomycota
Yarrowia lipolytica CLIB122
3982125
3982035
-
Ile
AAT
[ENA]
¡û
>FG091800031
CR382127
Ascomycota
Yarrowia lipolytica CLIB122
563581
563672
+
Ile
AAT
[ENA]
¡û
>FG091800032
CR382127
Ascomycota
Yarrowia lipolytica CLIB122
581476
581568
+
Ile
AAT
[ENA]
¡û
>FG091800038
CR382127
Ascomycota
Yarrowia lipolytica CLIB122
909367
909459
+
Ile
AAT
[ENA]
¡û
>FG091800039
CR382127
Ascomycota
Yarrowia lipolytica CLIB122
1131383
1131476
+
Ile
AAT
[ENA]
¡û
>FG091800042
CR382127
Ascomycota
Yarrowia lipolytica CLIB122
1384822
1384914
+
Ile
AAT
[ENA]
¡û
>FG091800046
CR382127
Ascomycota
Yarrowia lipolytica CLIB122
1621733
1621642
-
Ile
AAT
[ENA]
¡û
>FG091800049
CR382127
Ascomycota
Yarrowia lipolytica CLIB122
1819384
1819292
-
Ile
AAT
[ENA]
¡û
>FG091800052
CR382132
Ascomycota
Yarrowia lipolytica CLIB122
1409506
1409414
-
Ile
AAT
[ENA]
¡û
>FG091800053
CR382132
Ascomycota
Yarrowia lipolytica CLIB122
2090649
2090557
-
Ile
AAT
[ENA]
¡û
>FG091800061
CR382132
Ascomycota
Yarrowia lipolytica CLIB122
3692493
3692585
+
Ile
AAT
[ENA]
¡û
>FG091900245
CR382127
Ascomycota
Yarrowia lipolytica CLIB122
1379010
1379100
+
Ile
AAT
[ENA]
¡û
>FG091900257
CR382127
Ascomycota
Yarrowia lipolytica CLIB122
2177545
2177635
+
Ile
AAT
[ENA]
¡û
>FG091900296
CR382132
Ascomycota
Yarrowia lipolytica CLIB122
3982125
3982035
-
Ile
AAT
[ENA]
¡û
Identical group No.340223 (6 seq.)
>FG090100613
CU329671
Ascomycota
Schizosaccharomyces_pombe_972h-
1600085
1600160
+
Ile
AAT
[ENA]
¡û
>FG090100615
CU329671
Ascomycota
Schizosaccharomyces_pombe_972h-
1618292
1618367
+
Ile
AAT
[ENA]
¡û
>FG090100616
CU329671
Ascomycota
Schizosaccharomyces_pombe_972h-
1645423
1645498
+
Ile
AAT
[ENA]
¡û
>FG090100638
CU329671
Ascomycota
Schizosaccharomyces_pombe_972h-
1630123
1630048
-
Ile
AAT
[ENA]
¡û
>FG092110015
CU329670
Ascomycota
Schizosaccharomyces_pombe_972h-
3768289
3768364
+
Ile
AAT
[ENA]
¡û
>FG092110024
CU329670
Ascomycota
Schizosaccharomyces_pombe_972h-
3773984
3773909
-
Ile
AAT
[ENA]
¡û
Identical group No.363854 (2 seq.)
>FG090100653
CU329672
Ascomycota
Schizosaccharomyces_pombe_972h-
817424
817499
+
Ile
AAT
[ENA]
¡û
>FG092110006
CU329670
Ascomycota
Schizosaccharomyces_pombe_972h-
1772295
1772370
+
Ile
AAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK