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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Anticodon = ACG
HIT:
8 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.490187 (12 seq.)
>WENV182629523
OJKS01027300
[OJKS] metagenome; surface
133
61
-
Arg
ACG
[ENA]
¢þ
>FG090100081
CR380948
Ascomycota
Candida glabrata CBS 138 CBS138
153812
153740
-
Arg
ACG
[ENA]
¡û
>FG090100158
CR380955
Ascomycota
Candida glabrata CBS 138 CBS138
843891
843819
-
Arg
ACG
[ENA]
¡û
>FG090100198
CR380958
Ascomycota
Candida glabrata CBS 138 CBS138
840211
840283
+
Arg
ACG
[ENA]
¡û
>FG090100221
CR380959
Ascomycota
Candida glabrata CBS 138 CBS138
1098006
1097934
-
Arg
ACG
[ENA]
¡û
>FU090900006
AE016816
Ascomycota
Ashbya gossypii ATCC 10895
363107
363196
+
Arg
ACG
[ENA]
¡û
>FU090900017
AE016820
Ascomycota
Ashbya gossypii ATCC 10895
363619
363530
-
Arg
ACG
[ENA]
¡û
>FU090900147
CR382124
Ascomycota
Kluyveromyces lactis NRRL Y-1140
106366
106277
-
Arg
ACG
[ENA]
¡û
>FU090900153
CR382126
Ascomycota
Kluyveromyces lactis NRRL Y-1140
1297753
1297842
+
Arg
ACG
[ENA]
¡û
>FU090900161
CR382126
Ascomycota
Kluyveromyces lactis NRRL Y-1140
1064322
1064233
-
Arg
ACG
[ENA]
¡û
>FG091900164
AE016815
Ascomycota
Ashbya gossypii ATCC 10895
633618
633707
+
Arg
ACG
[ENA]
¡û
>FG091900165
AE016815
Ascomycota
Ashbya gossypii ATCC 10895
633727
633816
+
Arg
ACG
[ENA]
¡û
Identical group No.490189 (7 seq.)
>FU090900090
CR382133
Ascomycota
Debaryomyces hansenii CBS767
78272
78176
-
Arg
ACG
[ENA]
¡û
>FU090900101
CR382135
Ascomycota
Debaryomyces hansenii CBS767
221470
221374
-
Arg
ACG
[ENA]
¡û
>FU090900126
CR382139
Ascomycota
Debaryomyces hansenii CBS767
1864447
1864543
+
Arg
ACG
[ENA]
¡û
>FU090900172
CP000497
Ascomycota
Pichia stipitis CBS 6054
425567
425662
+
Arg
ACG
[ENA]
¡û
>FU090900174
CP000498
Ascomycota
Pichia stipitis CBS 6054
299863
299958
+
Arg
ACG
[ENA]
¡û
>FG091900217
CP000496
Ascomycota
Pichia stipitis CBS 6054
1323377
1323472
+
Arg
ACG
[ENA]
¡û
>FG091900318
CR382135
Ascomycota
Debaryomyces hansenii CBS767
603878
603974
+
Arg
ACG
[ENA]
¡û
Identical group No.528429 (8 seq.)
>FG090100614
CU329671
Ascomycota
Schizosaccharomyces_pombe_972h-
1602188
1602260
+
Arg
ACG
[ENA]
¡û
>FG090100635
CU329671
Ascomycota
Schizosaccharomyces_pombe_972h-
1647356
1647282
-
Arg
ACG
[ENA]
¡û
>FG090100655
CU329672
Ascomycota
Schizosaccharomyces_pombe_972h-
925852
925924
+
Arg
ACG
[ENA]
¡û
>FG090100662
CU329672
Ascomycota
Schizosaccharomyces_pombe_972h-
1106327
1106399
+
Arg
ACG
[ENA]
¡û
>FG090100678
CU329672
Ascomycota
Schizosaccharomyces_pombe_972h-
1092667
1092595
-
Arg
ACG
[ENA]
¡û
>FG090100679
CU329672
Ascomycota
Schizosaccharomyces_pombe_972h-
1068254
1068182
-
Arg
ACG
[ENA]
¡û
>FG092110014
CU329670
Ascomycota
Schizosaccharomyces_pombe_972h-
3736520
3736592
+
Arg
ACG
[ENA]
¡û
>FG092110022
CU329670
Ascomycota
Schizosaccharomyces_pombe_972h-
5045204
5045132
-
Arg
ACG
[ENA]
¡û
Identical group No.536288 (12 seq.)
>WENV170659290
JXWR01002956
[JXWR] soil metagenome; rice field; ambient CO2
4077
4149
+
Arg
ACG
[ENA]
¢þ
>WENV170659547
JXWR01009618
[JXWR] soil metagenome; rice field; ambient CO2
6858
6930
+
Arg
ACG
[ENA]
¢þ
>WENV170659586
JXWR01011046
[JXWR] soil metagenome; rice field; ambient CO2
360
432
+
Arg
ACG
[ENA]
¢þ
>WENV170659612
JXWR01014325
[JXWR] soil metagenome; rice field; ambient CO2
773
845
+
Arg
ACG
[ENA]
¢þ
>WENV170668489
LAFL01003525
[LAFL] hot springs metagenome; hot springs water enriched for viruses sample NL10_1002_vDNA_WGA
1
73
+
Arg
ACG
[ENA]
¢þ
>SC0100042
NC_001136
Ascomycota
Saccharomyces cerevisiae S288c
620038
619966
-
Arg
ACG
[ENA]
¡û
>SC0100055
NC_001137
Ascomycota
Saccharomyces cerevisiae S288c
492419
492347
-
Arg
ACG
[ENA]
¡û
>SC0100138
NC_001143
Ascomycota
Saccharomyces cerevisiae S288c
490611
490683
+
Arg
ACG
[ENA]
¡û
>SC0100146
NC_001144
Ascomycota
Saccharomyces cerevisiae S288c
374356
374428
+
Arg
ACG
[ENA]
¡û
>SC0100195
NC_001147
Ascomycota
Saccharomyces cerevisiae S288c
340372
340300
-
Arg
ACG
[ENA]
¡û
>W1610158750
FAMN01001435
Bacillota
Clostridioides difficile [FAMN]
121
193
+
Arg
ACG
[ENA]
¡û
>W1710160417
FAMN01001435
Bacillota
Clostridioides difficile [FAMN]
121
193
+
Arg
ACG
[ENA]
¡û
Identical group No.541140 (1 seq.)
>FG090100371
AL590446
Microsporidia
Encephalitozoon_cuniculi_GB-M1
165236
165308
+
Arg
ACG
[ENA]
¡û
Identical group No.560558 (2 seq.)
>WENV170659352
JXWR01003896
[JXWR] soil metagenome; rice field; ambient CO2
9385
9313
-
Arg
ACG
[ENA]
¢þ
>SC0100114
NC_001142
Ascomycota
Saccharomyces cerevisiae S288c
233935
234007
+
Arg
ACG
[ENA]
¡û
Identical group No.728027 (1 seq.)
>FG090100740
CR382130
Ascomycota
Yarrowia lipolytica CLIB122
53373
53444
+
Arg
ACG
[ENA]
¡û
Identical group No.735083 (3 seq.)
>FG090800045
AE017350
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
499931
499829
-
Arg
ACG
[ENA]
¡û
>FU090900066
AE017347
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
52439
52529
+
Arg
ACG
[ENA]
¡û
>FU090900079
AE017350
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
639486
639601
+
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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