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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Anticodon = TGA
HIT:
11 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.164834 (1 seq.)
>FG090800167
CR382131
Ascomycota
Yarrowia lipolytica CLIB122
1432846
1432751
-
Ser
TGA
[ENA]
¡û
Identical group No.178478 (1 seq.)
>FG090100360
AL590443
Microsporidia
Encephalitozoon_cuniculi_GB-M1
41045
41127
+
Ser
TGA
[ENA]
¡û
Identical group No.183188 (16 seq.)
>WENV180229022
OBCG01013141
[OBCG] human gut metagenome; human gut
90
7
-
Ser
TGA
[ENA]
¢þ
>WENV180409864
OBUW01000035
[OBUW] human gut metagenome; faeces
156
239
+
Ser
TGA
[ENA]
¢þ
>WENV180409943
OBUW01000175
[OBUW] human gut metagenome; faeces
32975
32894
-
Ser
TGA
[ENA]
¢þ
>WENV180410033
OBUW01000434
[OBUW] human gut metagenome; faeces
14675
14592
-
Ser
TGA
[ENA]
¢þ
>WENV180566382
OCLI01001828
[OCLI] human gut metagenome; human gut
926
1007
+
Ser
TGA
[ENA]
¢þ
>WENV180566503
OCLJ01007311
[OCLJ] human gut metagenome; human gut
295
214
-
Ser
TGA
[ENA]
¢þ
>WENV180569026
OCLP01003387
[OCLP] human gut metagenome; human gut
193
274
+
Ser
TGA
[ENA]
¢þ
>WENV180987826
ODVK01171127
[ODVK] human metagenome; G_DNA_Supragingival plaque
108
189
+
Ser
TGA
[ENA]
¢þ
>WENV181675765
OGOP01012093
[OGOP] human gut metagenome; faeces
1812
1731
-
Ser
TGA
[ENA]
¢þ
>WENV182827310
OKCY01000026
[OKCY] human gut metagenome; human gut
3757
3840
+
Ser
TGA
[ENA]
¢þ
>WENV182847595
OKKB01000057
[OKKB] human gut metagenome; human gut
73225
73144
-
Ser
TGA
[ENA]
¢þ
>WENV182849302
OKKP01000724
[OKKP] human gut metagenome; human gut
1129
1212
+
Ser
TGA
[ENA]
¢þ
>WENV183122280
OLNV01022605
[OLNV] human gut metagenome; faeces
1056
1137
+
Ser
TGA
[ENA]
¢þ
>WENV183790607
PPYF01412807
[PPYF] human gut metagenome; stool from patient with Crohn's disease
2876
2957
+
Ser
TGA
[ENA]
¢þ
>FG090100289
CR382137
Ascomycota
Debaryomyces hansenii CBS767
1785036
1785120
+
Ser
TGA
[ENA]
¡û
>FG090100294
CR382137
Ascomycota
Debaryomyces hansenii CBS767
1689419
1689335
-
Ser
TGA
[ENA]
¡û
Identical group No.187359 (1 seq.)
>FG090100032
AE016817
Ascomycota
Ashbya gossypii ATCC 10895
107771
107690
-
Ser
TGA
[ENA]
¡û
Identical group No.187368 (11 seq.)
>WENV170659168
JXWR01001072
[JXWR] soil metagenome; rice field; ambient CO2
5420
5337
-
Ser
TGA
[ENA]
¢þ
>WENV170659294
JXWR01003106
[JXWR] soil metagenome; rice field; ambient CO2
1973
1892
-
Ser
TGA
[ENA]
¢þ
>WENV170659298
JXWR01003169
[JXWR] soil metagenome; rice field; ambient CO2
4188
4107
-
Ser
TGA
[ENA]
¢þ
>FG090100183
CR380957
Ascomycota
Candida glabrata CBS 138 CBS138
769504
769587
+
Ser
TGA
[ENA]
¡û
>FG090100220
CR380959
Ascomycota
Candida glabrata CBS 138 CBS138
1246723
1246640
-
Ser
TGA
[ENA]
¡û
>FG090100427
CR382122
Ascomycota
Kluyveromyces lactis NRRL Y-1140
818983
818902
-
Ser
TGA
[ENA]
¡û
>SC0100061
NC_001137
Ascomycota
Saccharomyces cerevisiae S288c
288522
288441
-
Ser
TGA
[ENA]
¡û
>SC0100107
NC_001141
Ascomycota
Saccharomyces cerevisiae S288c
248847
248928
+
Ser
TGA
[ENA]
¡û
>SC0100200
NC_001148
Ascomycota
Saccharomyces cerevisiae S288c
689562
689643
+
Ser
TGA
[ENA]
¡û
>FG091100034
AE016817
Ascomycota
Ashbya gossypii ATCC 10895
565946
565863
-
Ser
TGA
[ENA]
¡û
>FG091100104
CR382123
Ascomycota
Kluyveromyces lactis NRRL Y-1140
709413
709496
+
Ser
TGA
[ENA]
¡û
Identical group No.199430 (1 seq.)
>FG092810004
CU329670
Ascomycota
Schizosaccharomyces_pombe_972h-
4265149
4265245
+
Ser
TGA
[ENA]
¡û
Identical group No.201385 (1 seq.)
>FG091800062
CR382132
Ascomycota
Yarrowia lipolytica CLIB122
3730131
3730228
+
Ser
TGA
[ENA]
¡û
Identical group No.203291 (2 seq.)
>FG090100507
CM000437
Ascomycota
Pichia stipitis CBS 6054
694990
695073
+
Ser
TGA
[ENA]
¡û
>FG090100574
CP000499
Ascomycota
Pichia stipitis CBS 6054
591431
591350
-
Ser
TGA
[ENA]
¡û
Identical group No.207293 (1 seq.)
>FG090800099
CU329672
Ascomycota
Schizosaccharomyces_pombe_972h-
1689713
1689809
+
Ser
TGA
[ENA]
¡û
Identical group No.207294 (1 seq.)
>FG091900199
AE017342
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
1294401
1294503
+
Pseudo
TGA
[ENA]
¡û
Identical group No.210468 (1 seq.)
>FG091100190
CR382136
Ascomycota
Debaryomyces hansenii CBS767
865673
865754
+
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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